CX295592

Overview
NameCX295592
Unique NameCX295592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_KINRD (10 kDa chaperonin OS=Kineococcus radiotolerans (strain ATCC BAA-149 / DSM 14245 / SRS30216) GN=groS PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.564e-13
Identity = 39/90 (43.33%), Postives = 56/90 (62.22%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVV 530
            SI PL DR++VK    E+ T  G+ +P  A+ KPQ GEV+AVG G+      ++ + V  G +VIYSKY GTE+++ G   LI+   DV+
Sbjct:    4 SITPLEDRIVVKPLDAEQTTASGLVIPDTAKEKPQEGEVLAVGPGRVDDNGNRVPVDVAVGDKVIYSKYGGTEVKYGGDELLILSARDVL 93          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_WOLTR (10 kDa chaperonin OS=Wolbachia sp. subsp. Brugia malayi (strain TRS) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 37/94 (39.36%), Postives = 61/94 (64.89%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEG-KTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            S+  L D VL  IK + E+  GGI LPS+A+ KP  GEV+A+GEG +     ++ ++VK G +V Y ++AGTE+E      ++++E D++ I++
Sbjct:    5 SLSVLDDSVL--IKPINEEKQGGIVLPSSAEKKPTKGEVIAIGEGSRNSSGERIALTVKAGDKVFYRQWAGTEIEHGSEKLIVMKESDILAIIK 96          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_RALME (10 kDa chaperonin OS=Ralstonia metallidurans (strain CH34 / ATCC 43123 / DSM 2839) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+A+G GK   K   + + VK G +V++ KYAG  ++ +G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDNETKTASGIVIPDNAAEKPDQGEVLAIGPGKKDDKGNNIALDVKVGDRVLFGKYAGQGVKVDGQELLVMREEDIMAVV 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_RALEJ (10 kDa chaperonin OS=Ralstonia eutropha (strain JMP134) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+A+G GK   K   + + VK G +V++ KYAG  ++ +G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDNETKTASGIVIPDNAAEKPDQGEVLAIGPGKKDDKGNNIALDVKVGDRVLFGKYAGQGVKVDGQELLVMREEDIMAVV 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_RALEH (10 kDa chaperonin OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 37/93 (39.78%), Postives = 58/93 (62.37%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+A+G GK   K   + + VK G +V++ KYAG  ++  G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDNETKTASGIVIPDNAAEKPDQGEVLAIGPGKKDDKGNNIALDVKVGDRVLFGKYAGQAVKVEGQELLVMREEDIMAVV 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_POLSJ (10 kDa chaperonin OS=Polaromonas sp. (strain JS666 / ATCC BAA-500) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 38/93 (40.86%), Postives = 60/93 (64.52%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++PL DRV+VK    E KT  GI +P +A  KP  GEV+AVG GK   K  L  ++VK G +V++ KY+G  ++ +G   L+++E+D+  ++E
Sbjct:    3 LRPLHDRVIVKRVENETKTASGIVIPDSAAEKPDQGEVLAVGPGKKNDKGDLSPMAVKIGDRVLFGKYSGQTVKVDGDELLVMKEEDLFAVVE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CUPTR (10 kDa chaperonin OS=Cupriavidus taiwanensis (strain R1 / LMG 19424) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 37/93 (39.78%), Postives = 59/93 (63.44%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +++PL DRV+VK    E KT  GI +P  A  KP  GEV+A+G GK   K   + + VK G +V++ KYAG  ++ +G   L++RE+D++ ++
Sbjct:    2 NLRPLHDRVIVKRLDNETKTASGIVIPDNAAEKPDQGEVLAIGPGKKDDKGNNIALDVKVGDRVLFGKYAGQGVKVDGQELLVMREEDIMAVV 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_ANASL (10 kDa chaperonin OS=Anabaena sp. (strain L31) GN=groS PE=3 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.573e-13
Identity = 36/94 (38.30%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +++KPLGDRV VK+ +  EK    ++ P  A+ KPQ GEVVA+G GK     ++ ++ VK G  ++YSKYAGT+++     ++++ E D++ ++
Sbjct:    9 STVKPLGDRVFVKV-SASEKRPRRLYFPDTAKEKPQVGEVVALGAGKRNDDGSRQELEVKVGDLLLYSKYAGTDVKLGTEEYVLLSEKDILAMV 101          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CHLFF (10 kDa chaperonin OS=Chlamydophila felis (strain Fe/C-56) GN=groS PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.910e-12
Identity = 40/92 (43.48%), Postives = 55/92 (59.78%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            IKPLGDR+LVK +  +  + GGI LP  A+ K    EV+A+G GK     + L   VK G  V+  KYAG EL   G  ++IV+E +V+ +L
Sbjct:   10 IKPLGDRILVKREEEDTTSHGGIILPDTAKKKQDRAEVLALGTGKRDKDGQILPFEVKVGDIVLIDKYAGQELTIEGEEYVIVQESEVMAVL 101          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_OLEAN (10 kDa chaperonin OS=Oleispira antarctica GN=groS PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.255e-12
Identity = 37/94 (39.36%), Postives = 57/94 (60.64%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAG-TELEFNGANHLIVREDDVVGILE 542
            I+PL DR++V+ K  E  T GGI LP AA  KP  G V++VG G+ +    +  ++V  G  V++ KY+G   ++ +G   LI+ E D+ G+LE
Sbjct:    3 IRPLHDRIVVRRKEEETATAGGIILPGAAAEKPNQGVVISVGTGRILDNGSVQALAVNEGDVVVFGKYSGQNTIDIDGEELLILNESDIYGVLE 96          
The following BLAST results are available for this feature:
BLAST of CX295592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_KINRD6.564e-1343.3310 kDa chaperonin OS=Kineococcus radiotolerans (st... [more]
CH10_WOLTR8.573e-1339.3610 kDa chaperonin OS=Wolbachia sp. subsp. Brugia m... [more]
CH10_RALME8.573e-1339.7810 kDa chaperonin OS=Ralstonia metallidurans (stra... [more]
CH10_RALEJ8.573e-1339.7810 kDa chaperonin OS=Ralstonia eutropha (strain JM... [more]
CH10_RALEH8.573e-1339.7810 kDa chaperonin OS=Ralstonia eutropha (strain AT... [more]
CH10_POLSJ8.573e-1340.8610 kDa chaperonin OS=Polaromonas sp. (strain JS666... [more]
CH10_CUPTR8.573e-1339.7810 kDa chaperonin OS=Cupriavidus taiwanensis (stra... [more]
CH10_ANASL8.573e-1338.3010 kDa chaperonin OS=Anabaena sp. (strain L31) GN=... [more]
CH10_CHLFF1.910e-1243.4810 kDa chaperonin OS=Chlamydophila felis (strain F... [more]
CH10_OLEAN4.255e-1239.3610 kDa chaperonin OS=Oleispira antarctica GN=groS ... [more]

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Properties
Property NameValue
Genbank descriptionC05073H01SK DroRLeaf1 Citrus clementina cDNA clone C05073H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295592 ID=CX295592; Name=CX295592; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAACCTTATCAACTACTCGCTCGCTTCTCGCTTATCATTTCCAAT
CAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAA
TCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCA
GCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAA
GACAGTTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGG
TCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAAT
CATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGA
AATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTG
AGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAG
GAGAAAACTTCCATTGGAAACGTCATTGCTGTTGG
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