CX295592

Overview
NameCX295592
Unique NameCX295592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_STAAE (10 kDa chaperonin OS=Staphylococcus aureus (strain Newman) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 32/93 (34.41%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   +L++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_STAAC (10 kDa chaperonin OS=Staphylococcus aureus (strain COL) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 32/93 (34.41%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   +L++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_STAAB (10 kDa chaperonin OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 32/93 (34.41%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   +L++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_STAA9 (10 kDa chaperonin OS=Staphylococcus aureus (strain JH9) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 32/93 (34.41%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   +L++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_STAA8 (10 kDa chaperonin OS=Staphylococcus aureus (strain NCTC 8325) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 32/93 (34.41%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   +L++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_STAA3 (10 kDa chaperonin OS=Staphylococcus aureus (strain USA300) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 32/93 (34.41%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   +L++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_STAA2 (10 kDa chaperonin OS=Staphylococcus aureus (strain JH1) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 32/93 (34.41%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   +L++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_STAA1 (10 kDa chaperonin OS=Staphylococcus aureus (strain Mu3 / ATCC 700698) GN=groS PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 5.557e-12
Identity = 32/93 (34.41%), Postives = 61/93 (65.59%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGK-AKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +KP+G+RV+++ K  E+ T  GI L  +A+ K   G +VAVG G+ +    ++   VK G +V++ +YAGTE++ +   +L++ E+D++ ++E
Sbjct:    2 LKPIGNRVIIEKKEQEQTTKSGIVLTDSAKEKSNEGVIVAVGTGRLLNDGTRVTPEVKEGDRVVFQQYAGTEVKRDNETYLVLNEEDILAVIE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_VESOH (10 kDa chaperonin OS=Vesicomyosocius okutanii subsp. Calyptogena okutanii (strain HA) GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 35/94 (37.23%), Postives = 60/94 (63.83%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +I+PL DRV+V+    ++ T  G+ +P +A  KP  G VVAVG GK       + + V  G +V++++YAGTE++ +G   LI++E D+V +++
Sbjct:    2 NIRPLHDRVVVRRVEEKKTTSSGLIIPDSATEKPSEGVVVAVGNGKKNDNGDTIALDVTIGNKVLFAQYAGTEIKVDGKKLLIMKEGDIVAVIK 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_THEM4 (10 kDa chaperonin OS=Thermosipho melanesiensis (strain BI429 / DSM 12029) GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 35/92 (38.04%), Postives = 58/92 (63.04%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++PLG R+L+K    E++T+GGI LP  A+ KP   EVVAVG          D+ +  G +VI+SKY+GTE++    +++I+  +D++  +E
Sbjct:    3 VRPLGARLLIKPIQEEKRTEGGIVLPDTAKEKPMKAEVVAVG-----NLEDSDVDIVVGDKVIFSKYSGTEIKIEDDDYIIIDVEDILAKIE 89          
The following BLAST results are available for this feature:
BLAST of CX295592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_STAAE5.557e-1234.4110 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAC5.557e-1234.4110 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAAB5.557e-1234.4110 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAA95.557e-1234.4110 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAA85.557e-1234.4110 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAA35.557e-1234.4110 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAA25.557e-1234.4110 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_STAA15.557e-1234.4110 kDa chaperonin OS=Staphylococcus aureus (strain... [more]
CH10_VESOH7.257e-1237.2310 kDa chaperonin OS=Vesicomyosocius okutanii subs... [more]
CH10_THEM47.257e-1238.0410 kDa chaperonin OS=Thermosipho melanesiensis (st... [more]

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Properties
Property NameValue
Genbank descriptionC05073H01SK DroRLeaf1 Citrus clementina cDNA clone C05073H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295592 ID=CX295592; Name=CX295592; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAACCTTATCAACTACTCGCTCGCTTCTCGCTTATCATTTCCAAT
CAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAA
TCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCA
GCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAA
GACAGTTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGG
TCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAAT
CATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGA
AATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTG
AGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAG
GAGAAAACTTCCATTGGAAACGTCATTGCTGTTGG
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