CX295592

Overview
NameCX295592
Unique NameCX295592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_PSEMY (10 kDa chaperonin OS=Pseudomonas mendocina (strain ymp) GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 35/94 (37.23%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 542
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG GK +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEETKTAGGIVLPGSAAEKPNQGEVVAVGTGKVLENGEVRPLAVKVGDKVVFGPYSGSNTVKVDGEDLLVMGENEILAVIE 96          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CHLTB (10 kDa chaperonin OS=Chlamydia trachomatis (strain L2b/UCH-1/proctitis) GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            IKPLGDR+LVK +       GGI LP  A+ K    EVVA+G GK   K  +L   V+ G  V+  KY+G EL   G  ++IV+  +V+ +L+
Sbjct:   10 IKPLGDRILVKREEEASTARGGIILPDTAKKKQDRAEVVALGTGKKDDKGQQLPFEVQVGDIVLIDKYSGQELTVEGEEYVIVQMSEVIAVLQ 102          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CHLT2 (10 kDa chaperonin OS=Chlamydia trachomatis (strain L2/434/Bu / ATCC VR-902B) GN=groS PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.257e-12
Identity = 39/93 (41.94%), Postives = 54/93 (58.06%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            IKPLGDR+LVK +       GGI LP  A+ K    EVVA+G GK   K  +L   V+ G  V+  KY+G EL   G  ++IV+  +V+ +L+
Sbjct:   10 IKPLGDRILVKREEEASTARGGIILPDTAKKKQDRAEVVALGTGKKDDKGQQLPFEVQVGDIVLIDKYSGQELTVEGEEYVIVQMSEVIAVLQ 102          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_TREPS (10 kDa chaperonin OS=Treponema pallidum subsp. pallidum (strain SS14) GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            I PL DRVLVK    E KT  GI +P  AQ K Q+G V+AVG        K+ +SV  G +V++ KYAG  ++ +G  HL+++  D++ ++E
Sbjct:    3 IIPLADRVLVKTDKSETKTASGIIIPDTAQEKMQSGTVIAVGS----DSEKIKVSV--GQRVMHDKYAGNPVKIDGEEHLLLKGADILAVIE 88          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_TREPA (10 kDa chaperonin OS=Treponema pallidum GN=groS PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.479e-12
Identity = 38/92 (41.30%), Postives = 56/92 (60.87%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            I PL DRVLVK    E KT  GI +P  AQ K Q+G V+AVG        K+ +SV  G +V++ KYAG  ++ +G  HL+++  D++ ++E
Sbjct:    3 IIPLADRVLVKTDKSETKTASGIIIPDTAQEKMQSGTVIAVGS----DSEKIKVSV--GQRVMHDKYAGNPVKIDGEEHLLLKGADILAVIE 88          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_VEREI (10 kDa chaperonin OS=Verminephrobacter eiseniae (strain EF01-2) GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 37/94 (39.36%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +++PL DRV+VK    E  T  GI +P  A  KP  GEV+AVG GK   K +L  ++VK G +V++ KY+G  ++ +    L+++EDD+  ++E
Sbjct:    2 NLRPLHDRVIVKRIESETTTASGIVIPDNAAEKPDQGEVLAVGPGKKNDKGELIALNVKVGDRVLFGKYSGQTVKVHRDELLVMKEDDLFAVVE 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_PSEPK (10 kDa chaperonin OS=Pseudomonas putida (strain KT2440) GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 34/94 (36.17%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 542
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEESKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMAENEILAVVE 96          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_PSEP1 (10 kDa chaperonin OS=Pseudomonas putida (strain F1 / ATCC 700007) GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 34/94 (36.17%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 542
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEESKTAGGIVLPGSAAEKPNRGEVVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMAENEILAVVE 96          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_PSEF5 (10 kDa chaperonin OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 33/94 (35.11%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 542
            ++PL DRV+++    E KT GGI LP +A  KP  GE+VAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEESKTAGGIVLPGSAAEKPNRGEIVAVGTGRVLDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMAENEILAVIE 96          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_PSEE4 (10 kDa chaperonin OS=Pseudomonas entomophila (strain L48) GN=groS PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.238e-11
Identity = 34/94 (36.17%), Postives = 63/94 (67.02%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKL-DISVKPGTQVIYSKYAGTE-LEFNGANHLIVREDDVVGILE 542
            ++PL DRV+++    E KT GGI LP +A  KP  GEVVAVG G+ +   ++  ++VK G +V++  Y+G+  ++ +G + L++ E++++ ++E
Sbjct:    3 LRPLHDRVVIRRSEEESKTAGGIVLPGSAAEKPNRGEVVAVGTGRILDNGEVRALAVKVGDKVVFGPYSGSNTVKVDGEDLLVMAENEILAVIE 96          
The following BLAST results are available for this feature:
BLAST of CX295592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_PSEMY7.257e-1237.2310 kDa chaperonin OS=Pseudomonas mendocina (strain... [more]
CH10_CHLTB7.257e-1241.9410 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH10_CHLT27.257e-1241.9410 kDa chaperonin OS=Chlamydia trachomatis (strain... [more]
CH10_TREPS9.479e-1241.3010 kDa chaperonin OS=Treponema pallidum subsp. pal... [more]
CH10_TREPA9.479e-1241.3010 kDa chaperonin OS=Treponema pallidum GN=groS PE... [more]
CH10_VEREI1.238e-1139.3610 kDa chaperonin OS=Verminephrobacter eiseniae (s... [more]
CH10_PSEPK1.238e-1136.1710 kDa chaperonin OS=Pseudomonas putida (strain KT... [more]
CH10_PSEP11.238e-1136.1710 kDa chaperonin OS=Pseudomonas putida (strain F1... [more]
CH10_PSEF51.238e-1135.1110 kDa chaperonin OS=Pseudomonas fluorescens (stra... [more]
CH10_PSEE41.238e-1136.1710 kDa chaperonin OS=Pseudomonas entomophila (stra... [more]

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Properties
Property NameValue
Genbank descriptionC05073H01SK DroRLeaf1 Citrus clementina cDNA clone C05073H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295592 ID=CX295592; Name=CX295592; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAACCTTATCAACTACTCGCTCGCTTCTCGCTTATCATTTCCAAT
CAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAA
TCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCA
GCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAA
GACAGTTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGG
TCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAAT
CATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGA
AATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTG
AGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAG
GAGAAAACTTCCATTGGAAACGTCATTGCTGTTGG
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