CX295592

Overview
NameCX295592
Unique NameCX295592
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length685
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_DESPS (10 kDa chaperonin OS=Desulfotalea psychrophila GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 46/93 (49.46%), Postives = 66/93 (70.97%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            I+PL DR+LVK    EEKT GGI +P +A+ KP  G+VVAVG GK      ++ + VK G  V++SKY GT+++ +G + LI+REDD++GI+E
Sbjct:    3 IRPLNDRLLVKRLAEEEKTAGGIIIPDSAKEKPAEGQVVAVGPGKVSDSGERVALQVKEGDLVLFSKYGGTDVKLDGEDFLIMREDDILGIME 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CYAP8 (10 kDa chaperonin OS=Cyanothece sp. (strain PCC 8801) GN=groS PE=3 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 43/95 (45.26%), Postives = 67/95 (70.53%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGK-TVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            +++KPLGDRV VK+   EEKT GGI LP  A+ KPQ GE+V VG GK     ++ +  VK G +V+YSKYAGT+++  G +++++ E D++ +++
Sbjct:    9 STVKPLGDRVFVKVSASEEKTAGGILLPDTAKEKPQIGEIVTVGPGKRNDDGSRSEPEVKVGDKVLYSKYAGTDIKLGGEDYVLLSEKDILAVVD 103          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLONN (10 kDa chaperonin OS=Clostridium novyi (strain NT) GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 44/92 (47.83%), Postives = 66/92 (71.74%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            IKPLGDRV++K    EEKT  GI LP +A+ KPQ  E+VAVG G  V   ++ + VK G +V++SKY+GTE++ +G  + I+R++D++ I+E
Sbjct:    3 IKPLGDRVVIKRLEAEEKTKSGIVLPGSAKEKPQEAEIVAVGPGGLVDGKEVRMEVKVGDKVLFSKYSGTEVKLDGEEYTILRQNDILAIVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_CLOBO (10 kDa chaperonin OS=Clostridium botulinum GN=groS PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.366e-18
Identity = 43/92 (46.74%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            IKPLGDRV++K    EEKT  GI LP +A+ KPQ  E+VAVG G  V   ++++ VK G +V++S+YAG E++ +G  ++I+R++D++ I+E
Sbjct:    3 IKPLGDRVVIKRLEAEEKTKSGIVLPGSAKEKPQEAEIVAVGPGGLVDGKEVNMEVKVGDRVLFSQYAGNEVKIDGEEYIILRQNDILAIVE 94          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_THEVL (10 kDa chaperonin OS=Thermosynechococcus vulcanus GN=groS PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ GEV AVG GK     K   + VK G +V+YSKYAGTE++  G +++++ E D++ I+
Sbjct:    9 STVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_THEEB (10 kDa chaperonin OS=Thermosynechococcus elongatus (strain BP-1) GN=groS PE=3 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 3
Query:  261 TSIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAKLD-ISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +++KPLGDR+ VK+   EE+T GGI LP  A+ KPQ GEV AVG GK     K   + VK G +V+YSKYAGTE++  G +++++ E D++ I+
Sbjct:    9 STVKPLGDRIFVKVAESEERTAGGILLPDNAREKPQVGEVTAVGPGKLTEDGKRQPMDVKVGDKVLYSKYAGTEVKLAGEDYVLLSEKDILAIV 102          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_PROA2 (10 kDa chaperonin OS=Prosthecochloris aestuarii (strain DSM 271 / SK 413) GN=groS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 44/94 (46.81%), Postives = 64/94 (68.09%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGILE 542
            ++KPL DRV+VK    EEKT GG+++P   + KPQ GE+VAVG GK     + L++ V  G +V+Y KY+GTE+   G ++LI+RE D+  IL+
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPQYGEIVAVGTGKVAENGQVLEMQVNIGQKVLYGKYSGTEVTVEGEDYLIMRESDIFAILD 95          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_BACSU (10 kDa chaperonin OS=Bacillus subtilis GN=groS PE=1 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 41/92 (44.57%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + VK G ++I+SKYAGTE+++ G  +LI+RE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_BACA2 (10 kDa chaperonin OS=Bacillus amyloliquefaciens (strain FZB42) GN=groS PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.783e-18
Identity = 41/92 (44.57%), Postives = 67/92 (72.83%), Query Frame = 3
Query:  267 IKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKA-KLDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            +KPLGDRV++++   EEKT  GI LP +A+ KPQ G++VA G G+ +    ++ + VK G ++I+SKYAGTE+++ G  +LI+RE D++ ++
Sbjct:    2 LKPLGDRVVIELVESEEKTASGIVLPDSAKEKPQEGKIVAAGSGRVLESGERVALEVKEGDRIIFSKYAGTEVKYEGTEYLILRESDILAVI 93          
BLAST of CX295592 vs. ExPASy Swiss-Prot
Match: CH10_PROVI (10 kDa chaperonin OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=groS PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.329e-18
Identity = 45/93 (48.39%), Postives = 63/93 (67.74%), Query Frame = 3
Query:  264 SIKPLGDRVLVKIKTVEEKTDGGIFLPSAAQTKPQAGEVVAVGEGKTVGKAK-LDISVKPGTQVIYSKYAGTELEFNGANHLIVREDDVVGIL 539
            ++KPL DRV+VK    EEKT GG+++P   + KP  GEVVAVG GK     + L++ VK G +V+Y KY+GTE+   G ++LI+RE D+  IL
Sbjct:    2 NLKPLADRVIVKPAPAEEKTKGGLYIPDTGKEKPMYGEVVAVGAGKMSDSGQLLEMPVKAGDKVLYGKYSGTEVSVEGEDYLIMRESDIFAIL 94          
The following BLAST results are available for this feature:
BLAST of CX295592 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 489
Match NameE-valueIdentityDescription
CH10_DESPS1.366e-1849.4610 kDa chaperonin OS=Desulfotalea psychrophila GN=... [more]
CH10_CYAP81.366e-1845.2610 kDa chaperonin OS=Cyanothece sp. (strain PCC 88... [more]
CH10_CLONN1.366e-1847.8310 kDa chaperonin OS=Clostridium novyi (strain NT)... [more]
CH10_CLOBO1.366e-1846.7410 kDa chaperonin OS=Clostridium botulinum GN=groS... [more]
CH10_THEVL1.783e-1847.8710 kDa chaperonin OS=Thermosynechococcus vulcanus ... [more]
CH10_THEEB1.783e-1847.8710 kDa chaperonin OS=Thermosynechococcus elongatus... [more]
CH10_PROA21.783e-1846.8110 kDa chaperonin OS=Prosthecochloris aestuarii (s... [more]
CH10_BACSU1.783e-1844.5710 kDa chaperonin OS=Bacillus subtilis GN=groS PE=... [more]
CH10_BACA21.783e-1844.5710 kDa chaperonin OS=Bacillus amyloliquefaciens (s... [more]
CH10_PROVI2.329e-1848.3910 kDa chaperonin OS=Prosthecochloris vibrioformis... [more]

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Properties
Property NameValue
Genbank descriptionC05073H01SK DroRLeaf1 Citrus clementina cDNA clone C05073H01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295592 ID=CX295592; Name=CX295592; organism=Citrus clementina; type=EST; length=685bp
GAGGAGAACCTTATCAACTACTCGCTCGCTTCTCGCTTATCATTTCCAAT
CAGAATCTCTCTCGCTCTCTCTGCATCTGCAAGCAGATGGCGACAGCTCA
GCTAACAGCGTCATCAATTAAGGTTCCAGCAAGGAGCTTGACTTCATTCG
ATGGTCTCAGACCGTCTTCCGTCAAGTTCGCTTCCGTCGGAGGTGCTGCC
AGCCAACGCTCTTTCCGTCGCTTGGTCGTTAAAGCCGCTGCAGTCGTGGC
TCCCAAGTACACTTCAATTAAACCTTTGGGTGATAGAGTGCTGGTGAAAA
TCAAGACTGTAGAGGAGAAAACTGATGGTGGTATTTTTCTGCCATCTGCA
GCTCAAACAAAGCCTCAAGCAGGTGAGGTGGTAGCTGTTGGCGAGGGGAA
GACAGTTGGGAAGGCTAAACTGGACATATCTGTGAAGCCTGGGACCCAGG
TCATCTATTCGAAGTATGCAGGGACTGAGTTGGAGTTCAACGGCGCAAAT
CATCTCATAGTGAGGGAGGATGACGTAGTTGGCATTCTTGAAACAGATGA
AATCAAGGATCTTAAGCCCCTTAATGACAGAGTTTTCATCAAGGTTGCTG
AGGCTGAGGAGACAACTGCTGGAGGTTTGTTGTTGACGGAGGCAAGCAAG
GAGAAAACTTCCATTGGAAACGTCATTGCTGTTGG
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