CX295594

Overview
NameCX295594
Unique NameCX295594
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295594 vs. ExPASy Swiss-Prot
Match: RAB13_RAT (Ras-related protein Rab-13 OS=Rattus norvegicus GN=Rab13 PE=2 SV=2)

HSP 1 Score: 128.642 bits (322), Expect = 3.139e-29
Identity = 62/158 (39.24%), Postives = 95/158 (60.13%), Query Frame = 2
Query:  116 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 589
            +KL+ +GD  VGKT +I RF  D F++TY +TIGIDF  +T+ +E + ++LQ+WDTAGQERF+++  +Y R              +SF N   W+  ++    + V  +L+GNK D+  KR+V  E+ E  +RE  + F ETSAK+  N+   F  +A
Sbjct:    9 FKLLLIGDSGVGKTCLIIRFAEDNFNSTYISTIGIDFKIRTVEIEGKRIKLQVWDTAGQERFKTITTAYYRGAMGIILVYDITDEKSFENIQNWMKSIKENASAGVERLLLGNKCDMEAKRKVQREQAERLAREHRIRFFETSAKSSVNVDEAFSSLA 166          
BLAST of CX295594 vs. ExPASy Swiss-Prot
Match: RAB10_CANFA (Ras-related protein Rab-10 OS=Canis familiaris GN=RAB10 PE=2 SV=1)

HSP 1 Score: 128.642 bits (322), Expect = 3.139e-29
Identity = 66/158 (41.77%), Postives = 94/158 (59.49%), Query Frame = 2
Query:  116 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 589
            +KL+ +GD  VGKT ++ RF  D F+ T+ +TIGIDF  KT+ L+ + ++LQ+WDTAGQERF ++  SY R              +SF N SKW+  +      DV  +L+GNK D+ +KR V   +GE  +RE  + F ETSAK   NI+  F  +A
Sbjct:   10 FKLLLIGDSGVGKTCVLFRFSDDAFNTTFISTIGIDFKIKTVELQGKKIKLQIWDTAGQERFHTITTSYYRGAMGIMLVYDITNGKSFENISKWLRNIDEHANEDVERMLLGNKCDMDDKRVVPKGKGEQIAREHGIRFFETSAKVNINIEKAFLTLA 167          
BLAST of CX295594 vs. ExPASy Swiss-Prot
Match: RHN1_NICPL (Ras-related protein RHN1 OS=Nicotiana plumbaginifolia GN=RHN1 PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 65/184 (35.33%), Postives = 100/184 (54.35%), Query Frame = 2
Query:  119 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEEMVDVNLRSTLA 670
            KLV LGD   GK+S++ RF+  +F    ++TIG  F S T+ + + TV+ ++WDTAGQER+ SL P Y R               SF    KW+ E++ +   ++++ L GNK DL ++R+V+ EE    + E  + F+ETSAK   N+  +F +IA  LP  +   +     +VD     T A
Sbjct:   12 KLVLLGDMGAGKSSLVIRFVKGQFLEFQESTIGAAFFSSTLAVNNATVKFEIWDTAGQERYHSLAPMYYRGAAAAIIVYDITSSDSFARAKKWVQELQKQGNPNMVMALAGNKADLEDRRKVTAEEARLYAEENGLFFMETSAKTAVNVNAIFYEIAKRLPRAQPAQNPAGMVLVDRAAEGTRA 195          
BLAST of CX295594 vs. ExPASy Swiss-Prot
Match: RAB8A_CHICK (Ras-related protein Rab-8A OS=Gallus gallus GN=RAB8A PE=2 SV=1)

HSP 1 Score: 128.257 bits (321), Expect = 4.099e-29
Identity = 64/158 (40.51%), Postives = 94/158 (59.49%), Query Frame = 2
Query:  116 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIA 589
            +KL+ +GD  VGKT  + RF  D F+ T+ +TIGIDF  +T+ L+ + ++LQ+WDTAGQERFR++  +Y R              +SF N   W+  +      DV  +++GNK D  +KRQVS E+GE  +    + F+ETSAKA  NI+  F  +A
Sbjct:    9 FKLLLIGDSGVGKTCALFRFSEDAFNATFISTIGIDFKIRTIELDGKRIKLQIWDTAGQERFRTITTAYYRGAMGIMLVYDITNEKSFENIRNWVRNIEEHASPDVEKMILGNKCDANDKRQVSREQGEKLAASFGIKFMETSAKANINIENAFFTLA 166          
BLAST of CX295594 vs. ExPASy Swiss-Prot
Match: RAB3D_RAT (GTP-binding protein Rab-3D OS=Rattus norvegicus GN=Rab3d PE=1 SV=2)

HSP 1 Score: 127.872 bits (320), Expect = 5.354e-29
Identity = 59/157 (37.58%), Postives = 95/157 (60.51%), Query Frame = 2
Query:  116 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 586
            +KL+ +G+ SVGKTS + R+  D F   + +T+GIDF  KT+Y  D+ ++LQ+WDTAGQER+R++  +Y R             ++SF     W  +++T    +  ++LVGNK DL ++R VS E+G+  + +L   F E SAK   N+K +F ++
Sbjct:   23 FKLLLIGNSSVGKTSFLFRYADDSFTPAFVSTVGIDFKVKTVYRHDKRIKLQIWDTAGQERYRTITTAYYRGAMGFLLMYDIANQESFTAVQDWATQIKTYSWDNAQVILVGNKCDLEDERVVSAEDGQRLAGDLGFEFFEASAKENINVKQVFERL 179          
BLAST of CX295594 vs. ExPASy Swiss-Prot
Match: RYL1_YARLI (Ras-like GTP-binding protein RYL1 OS=Yarrowia lipolytica GN=RYL1 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 65/173 (37.57%), Postives = 102/173 (58.96%), Query Frame = 2
Query:  119 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAALPGMETLSSTKQEE 637
            KL+ +GD  VGK+ ++ RF  D+F  ++  TIGIDF  +T+ + ++ V+LQ+WDTAGQERFR++  +Y R              +SF N   W   V++     V ++LVGNK DL EKR VS E+G+A + +  + F+E S+K   N++  F  +A  +   +T++ TK  E
Sbjct:   13 KLLLIGDSGVGKSCLLLRFCEDQFTPSFITTIGIDFKIRTIDIGNQRVKLQVWDTAGQERFRTITTAYYRGAMGILLVYDVTDEKSFNNIENWYQNVQSYANEGVELILVGNKCDLDEKRVVSTEQGQALADKFGIPFLEASSKTNINVEECFYSVATRI--RDTVAKTKGNE 183          
BLAST of CX295594 vs. ExPASy Swiss-Prot
Match: RB11A_TOBAC (Ras-related protein Rab11A OS=Nicotiana tabacum GN=RAB11A PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 59/157 (37.58%), Postives = 101/157 (64.33%), Query Frame = 2
Query:  116 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 586
            +K+V +GD  VGK++I++RF  ++F    ++TIG++F ++T+ +E +TV+ Q+WDTAGQER+R++  +Y R             RQ+F N  +W+ E+R  R S+++I+L GNK+DL   R VS ++ +A  ++  + F+ETSA    N+   F+ I
Sbjct:   13 FKMVLIGDSGVGKSNILSRFTRNEFCLESKSTIGVEFATRTLQVEGKTVKAQIWDTAGQERYRAITSAYYRGAVGALLFYDITKRQTFDNVQRWLRELRDHRDSNIVIILAGNKSDLKHLRAVSEQDDQALVKKEGLSFLETSALEALNVDKAFQTI 169          
BLAST of CX295594 vs. ExPASy Swiss-Prot
Match: RAB4_DICDI (Ras-related protein Rab-4 OS=Dictyostelium discoideum GN=rab4 PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 61/155 (39.35%), Postives = 99/155 (63.87%), Query Frame = 2
Query:  119 KLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRK 583
            K + +G QSVGK+ ++ RF+ +KF +    TIG+DF S+ + ++ + V+LQ+WDTAGQERFRS++ SY R             R+S+ + + W+ +V++    DV I+LVGNK DL E+R+V+  E    ++E  ++F+ETSA  G  ++ +F K
Sbjct:    9 KFIIIGSQSVGKSCLLFRFIDNKFKSQSTHTIGVDFSSRVVDIQGKNVKLQIWDTAGQERFRSVVISYYRGSAGVALVYDVTNRESYNHITNWLSDVKSLASPDVTIILVGNKADLTEQREVTFLEASRIAQENGLLFMETSALTGEGVEEMFLK 163          
BLAST of CX295594 vs. ExPASy Swiss-Prot
Match: RAB3_CAEEL (Ras-related protein Rab-3 OS=Caenorhabditis elegans GN=rab-3 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 60/157 (38.22%), Postives = 96/157 (61.15%), Query Frame = 2
Query:  116 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKI 586
            +KL+ +G+ SVGKTS + R+  D F + + +T+GIDF  KT++  D+ V+LQ+WDTAGQER+R++  +Y R              +SF +   W  +++T    +  +VLVGNK D+  +R VS++ G   + +L + F ETSAK   N+K +F K+
Sbjct:   23 FKLLIIGNSSVGKTSFLFRYCDDSFTSAFVSTVGIDFKVKTVFRGDKRVKLQIWDTAGQERYRTITTAYYRGAMGFILMYDITNEESFNSVQDWCTQIKTYSWENAQVVLVGNKCDMDSERVVSMDRGRQLADQLGLEFFETSAKENINVKAVFEKL 179          
BLAST of CX295594 vs. ExPASy Swiss-Prot
Match: ARA1_ARATH (Ras-related protein ARA-1 OS=Arabidopsis thaliana GN=ARA-1 PE=2 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 67/197 (34.01%), Postives = 115/197 (58.38%), Query Frame = 2
Query:  116 YKLVFLGDQSVGKTSIITRFMYDKFDNTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQERFRSLIPSYIRXXXXXXXXXXXXXRQSFLNTSKWIDEVRTERGSDVIIVLVGNKTDLVEKRQVSIEEGEAKSRELNVMFIETSAKAGFNIKPLFRKIAAAL---PGMETLSSTKQEEMVDVNLRSTLAMHHSPQSQS 697
            +K+V +GD +VGK+++++R+  ++F    +ATIG++F +++M +E + V+ Q+WDTAGQERFR++  +Y R             R +F +  +W+DE++    + V  +LVGNK DL   R VS+EEG+A + E  + F+ETSA    N+K  F  +   +      + L+S   ++ + VN  S +   +S   QS
Sbjct:   13 FKIVVIGDSAVGKSNLLSRYARNEFSANSKATIGVEFQTQSMEIEGKEVKAQIWDTAGQERFRAVTSAYYRGAVGALVVYDITRRTTFESVGRWLDELKIHSDTTVARMLVGNKCDLENIRAVSVEEGKALAEEEGLFFVETSALDSTNVKTAFEMVILDIYNNVSRKQLNSDTYKDELTVNRVSLVKDDNSASKQS 209          
The following BLAST results are available for this feature:
BLAST of CX295594 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
RAB13_RAT3.139e-2939.24Ras-related protein Rab-13 OS=Rattus norvegicus GN... [more]
RAB10_CANFA3.139e-2941.77Ras-related protein Rab-10 OS=Canis familiaris GN=... [more]
RHN1_NICPL4.099e-2935.33Ras-related protein RHN1 OS=Nicotiana plumbaginifo... [more]
RAB8A_CHICK4.099e-2940.51Ras-related protein Rab-8A OS=Gallus gallus GN=RAB... [more]
RAB3D_RAT5.354e-2937.58GTP-binding protein Rab-3D OS=Rattus norvegicus GN... [more]
RYL1_YARLI6.992e-2937.57Ras-like GTP-binding protein RYL1 OS=Yarrowia lipo... [more]
RB11A_TOBAC6.992e-2937.58Ras-related protein Rab11A OS=Nicotiana tabacum GN... [more]
RAB4_DICDI6.992e-2939.35Ras-related protein Rab-4 OS=Dictyostelium discoid... [more]
RAB3_CAEEL6.992e-2938.22Ras-related protein Rab-3 OS=Caenorhabditis elegan... [more]
ARA1_ARATH6.992e-2934.01Ras-related protein ARA-1 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC05073H03SK DroRLeaf1 Citrus clementina cDNA clone C05073H03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295594 ID=CX295594; Name=CX295594; organism=Citrus clementina; type=EST; length=707bp
AGTCTTGGCTTTCTAAAATTGCTTCATCTTATTAAACAAATCAACTCACC
GTCTCTTACTGATCTTTCCCAGTTTGTTGACTCTGAAAATGGCGCCGGTG
TCGGCTCTCGCAAAGTACAAGCTGGTGTTTTTAGGAGATCAATCTGTGGG
CAAAACAAGTATCATCACTCGCTTCATGTATGATAAATTCGATAACACCT
ATCAGGCTACAATTGGTATTGATTTCCTTTCAAAAACTATGTACCTTGAA
GATCGAACTGTTCGTCTGCAGCTGTGGGATACAGCTGGACAGGAAAGATT
TAGAAGTCTCATTCCAAGCTACATCAGGGATTCTTCTGTTGCTGTTGTTG
TATATGATGTTGCAAGCCGGCAATCTTTCTTGAACACTTCAAAATGGATT
GATGAGGTTCGAACCGAGAGGGGTAGTGATGTCATCATTGTCCTTGTTGG
GAACAAAACTGACCTTGTGGAAAAAAGGCAAGTCTCCATAGAGGAAGGAG
AAGCCAAATCTCGGGAACTCAACGTCATGTTCATTGAAACGAGTGCTAAA
GCTGGTTTTAATATAAAGCCTTTGTTTCGGAAAATTGCTGCAGCATTGCC
AGGGATGGAAACACTTTCTTCAACAAAGCAAGAAGAAATGGTTGACGTGA
ATCTGAGGTCTACACTGGCAATGCATCACAGTCCCCAGTCTCAGTCAGTG
GATGCTC
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