CX295595

Overview
NameCX295595
Unique NameCX295595
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length672
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295595_ssr124 microsatellite CX295595_ssr124:124..135. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig6450 contig Ccv1_Contig6450:4..675. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295595 vs. ExPASy Swiss-Prot
Match: ILVE1_BACSU (Branched-chain-amino-acid transaminase 1 OS=Bacillus subtilis GN=ilvE PE=1 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 6.524e-26
Identity = 59/142 (41.55%), Postives = 85/142 (59.86%), Query Frame = 3
Query:  240 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFL 665
            D  +LGF     DYM+ M   +   +   +++ YA + L PS++V +YGQ V+EG KAYRT+DGR+LLFRPD N  R+    ERM MP    +  ++A+ Q+    K WVP     +LYIRP +I + P LG+  +  YTF+
Sbjct:   18 DPSSLGFGQYFTDYMFVMDYEEGIGWHHPRIAPYAPLTLDPSSSVFHYGQAVFEGLKAYRTDDGRVLLFRPDQNIKRLNRSCERMSMPPLDEELVLEALTQLVELEKDWVPKEKGTSLYIRPFVIATEPSLGVKASRSYTFM 159          
BLAST of CX295595 vs. ExPASy Swiss-Prot
Match: ILVE_STRCO (Probable branched-chain-amino-acid aminotransferase OS=Streptomyces coelicolor GN=ilvE PE=3 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.042e-23
Identity = 61/158 (38.61%), Postives = 91/158 (57.59%), Query Frame = 3
Query:  201 KPSV--FSDDEYADLDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPP-PGKGTLYIRPLLIGSGPVLGLGPAPEYTFL 665
            KPS    SD E A +   N GF     D+M T+K ++   +  GQL  YA + L P+  VL+Y Q ++EG KAYR  DG +  FRP+ N +R +  + R+ MP   VD F++A   +   +++WVP   G+ +LY+RP +I +   LG+ PA EY F+
Sbjct:    9 KPSAHPLSDSERAAI-LANPGFGRHFTDHMVTIKWTEGRGWHDGQLVPYAPLSLDPATMVLHYAQEIFEGLKAYRRPDGSVATFRPEKNGARFQASSRRLGMPELPVDTFIEACDALVAQDEKWVPAHGGEESLYLRPFMIATEVGLGVRPANEYLFI 165          
BLAST of CX295595 vs. ExPASy Swiss-Prot
Match: ILVE_MYCTU (Probable branched-chain-amino-acid aminotransferase OS=Mycobacterium tuberculosis GN=ilvE PE=1 SV=1)

HSP 1 Score: 103.219 bits (256), Expect = 1.273e-21
Identity = 52/138 (37.68%), Postives = 82/138 (59.42%), Query Frame = 3
Query:  255 GFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVP-PPGKGTLYIRPLLIGSGPVLGLGPAPEYTFL 665
            GF     D+M ++  ++   +   ++  Y  IEL PSA VL+Y Q V+EG KAYR  DG I+ FR D NA+R++  A R+ +P      F+++++Q+   +K WVP   G+  LY+RP +  + P LG+ PA +Y +L
Sbjct:   30 GFGKYHTDHMVSIDYAEGRGWHNARVIPYGPIELDPSAIVLHYAQEVFEGLKAYRWADGSIVSFRADANAARLRSSARRLAIPELPDAVFIESLRQLIAVDKAWVPGAGGEEALYLRPFIFATEPGLGVRPATQYRYL 167          
BLAST of CX295595 vs. ExPASy Swiss-Prot
Match: ILVE_MYCLE (Probable branched-chain-amino-acid aminotransferase OS=Mycobacterium leprae GN=ilvE PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.705e-21
Identity = 52/138 (37.68%), Postives = 80/138 (57.97%), Query Frame = 3
Query:  255 GFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVP-PPGKGTLYIRPLLIGSGPVLGLGPAPEYTFL 665
            GF     D+M ++       +   ++  Y  I+L PSA VL+Y Q V+EG KAYR  DG I+ FRPD NA+R++  A R+ +P    + F+D++ Q+   +  WVP   G+  LY+RP +  + P LG+ PA +Y +L
Sbjct:   30 GFGKYHTDHMVSIDYIDGRGWHDARVIPYGPIQLDPSAIVLHYAQEVFEGLKAYRWADGSIVSFRPDANAARLRSSARRIAIPELPDELFIDSLCQLIAVDNAWVPRVGGEEALYLRPFIFATEPGLGVRPAKQYRYL 167          
BLAST of CX295595 vs. ExPASy Swiss-Prot
Match: ILVE2_BACSU (Branched-chain-amino-acid aminotransferase 2 OS=Bacillus subtilis GN=ilvK PE=1 SV=5)

HSP 1 Score: 100.138 bits (248), Expect = 1.078e-20
Identity = 48/142 (33.80%), Postives = 80/142 (56.34%), Query Frame = 3
Query:  240 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFL 665
            D + L F     D+M+ M  +  + +   ++  Y  + + P+A V +YGQ V+EG KAY +ED  +LLFRP+ N  R+    +R+C+P    +Q ++ +KQ+   +K W+P     +LYIRP +I + P LG+  +  Y  L
Sbjct:   19 DPNQLSFGRVFTDHMFVMDYAADKGWYDPRIIPYQPLSMDPAAMVYHYGQTVFEGLKAYVSEDDHVLLFRPEKNMERLNQSNDRLCIPQIDEEQVLEGLKQLVAIDKDWIPNAEGTSLYIRPFIIATEPFLGVAASHTYKLL 160          
BLAST of CX295595 vs. ExPASy Swiss-Prot
Match: BCAT_NEMVE (Branched-chain-amino-acid aminotransferase OS=Nematostella vectensis GN=v1g246094 PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20
Identity = 48/136 (35.29%), Postives = 78/136 (57.35%), Query Frame = 3
Query:  240 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPA 647
            D + L F  +  D+   +K S  + +   Q+  Y N+ L P+A+ L+YG   +EG KAYR +DG+I +FRP +N  RM   A R C+P+ +  + V+ ++++    + WVP     +LYIRP +IG+   LG+  A
Sbjct:   61 DPNTLVFGKEFTDHALILKWSDEDGWDNPQIIPYGNLSLPPAASALHYGLECFEGMKAYRGDDGKIRMFRPLMNMKRMNNSAARACLPTFNSGEMVECIRKLIHLEREWVPHSNTCSLYIRPTMIGTQASLGVNKA 196          
BLAST of CX295595 vs. ExPASy Swiss-Prot
Match: BCAT_DICDI (Branched-chain-amino-acid aminotransferase OS=Dictyostelium discoideum GN=bcaA PE=3 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 6.987e-20
Identity = 50/135 (37.04%), Postives = 85/135 (62.96%), Query Frame = 3
Query:  240 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKG-TLYIRPLLIGSGPVLGLG 641
            D   L F  + +D+M  ++ +K E +   ++S Y N+ + PSA+VL+Y    +EG KAY+  +G+I LFRPD N +R    A+R+C+P  + +  ++ +K++ + +K W+ P GKG +LY+RP LI +   LG+G
Sbjct:   35 DKTKLVFGKQFSDHMIEVQWTKEEGWGVPKISGYHNLSIPPSASVLHYALECFEGMKAYKDSNGKIRLFRPDQNMNRFLNSAKRICLPEFNKEAVIELIKKLCVLDKDWI-PEGKGYSLYLRPTLIATQNSLGVG 168          
BLAST of CX295595 vs. ExPASy Swiss-Prot
Match: ILVE_STAAR (Probable branched-chain-amino-acid aminotransferase OS=Staphylococcus aureus (strain MRSA252) GN=ilvE PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19
Identity = 50/142 (35.21%), Postives = 78/142 (54.93%), Query Frame = 3
Query:  240 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPEYTFL 665
            D   LGF     DYM +      + +   ++  Y  IE+SP+A  ++YGQ V+EG KAY+ +DG + LFRPD N  R+     R+ MP  +  + ++ +KQ+    + WVP     +LYIRP +  +  VLG+G + +Y  L
Sbjct:   18 DTSQLGFGKYFTDYMLSYDYDADKGWHDLKIVPYGPIEISPAAQGVHYGQSVFEGLKAYK-KDGEVALFRPDENFKRLNNSLARLEMPQVNEGELLEGLKQLVDLEREWVPEGEGQSLYIRPFVFATEGVLGVGASHQYKLL 158          
BLAST of CX295595 vs. ExPASy Swiss-Prot
Match: BCAT_CAEEL (Branched-chain-amino-acid aminotransferase, cytosolic OS=Caenorhabditis elegans GN=bcat-1 PE=2 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 7.725e-19
Identity = 48/139 (34.53%), Postives = 76/139 (54.68%), Query Frame = 3
Query:  237 LDWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGLGPAPE 653
            LD   L F    ADYM T        +   ++     +++ P A VL+Y   ++EG KAYR  D +I +FRP++N +RMK  A R  +P    ++ ++ + ++   ++ WVP     +LY+RP LIG+ P LG+G A E
Sbjct:   65 LDPTKLKFGHTYADYMMTCDWDAERGWHHPKIEPIGELKIHPGAKVLHYASELFEGMKAYRGIDNKIRMFRPEMNMARMKRTALRAALPDFDSEEMINVLTELLRLDQEWVPNSDVCSLYLRPTLIGTDPTLGVGCATE 203          
BLAST of CX295595 vs. ExPASy Swiss-Prot
Match: BCAT1_MOUSE (Branched-chain-amino-acid aminotransferase, cytosolic OS=Mus musculus GN=Bcat1 PE=2 SV=2)

HSP 1 Score: 92.8189 bits (229), Expect = 1.721e-18
Identity = 47/133 (35.34%), Postives = 76/133 (57.14%), Query Frame = 3
Query:  240 DWDNLGFSIKPADYMYTMKCSKHENFKQGQLSRYANIELSPSAAVLNYGQGVYEGTKAYRTEDGRILLFRPDLNASRMKIGAERMCMPSPSVDQFVDAVKQIALANKRWVPPPGKGTLYIRPLLIGSGPVLGL 638
            D D+L F     D+M T++ S    +++  +  + N+ + P+A+VL+Y   ++EG KA+R  D +I LFRPDLN  RM   A R  +P    ++ +  + Q+   ++ WVP     +LYIRP  IG+ P LG+
Sbjct:   43 DPDSLVFGATFTDHMLTVEWSSASGWEKPHIKPFGNLPIHPAASVLHYAVELFEGLKAFRGVDNKIRLFRPDLNMDRMCRSAVRTTLPMFDKEELLKCILQLLQIDQEWVPYSTSASLYIRPTFIGTEPSLGV 175          
The following BLAST results are available for this feature:
BLAST of CX295595 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 40
Match NameE-valueIdentityDescription
ILVE1_BACSU6.524e-2641.55Branched-chain-amino-acid transaminase 1 OS=Bacill... [more]
ILVE_STRCO1.042e-2338.61Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_MYCTU1.273e-2137.68Probable branched-chain-amino-acid aminotransferas... [more]
ILVE_MYCLE3.705e-2137.68Probable branched-chain-amino-acid aminotransferas... [more]
ILVE2_BACSU1.078e-2033.80Branched-chain-amino-acid aminotransferase 2 OS=Ba... [more]
BCAT_NEMVE6.987e-2035.29Branched-chain-amino-acid aminotransferase OS=Nema... [more]
BCAT_DICDI6.987e-2037.04Branched-chain-amino-acid aminotransferase OS=Dict... [more]
ILVE_STAAR7.725e-1935.21Probable branched-chain-amino-acid aminotransferas... [more]
BCAT_CAEEL7.725e-1934.53Branched-chain-amino-acid aminotransferase, cytoso... [more]
BCAT1_MOUSE1.721e-1835.34Branched-chain-amino-acid aminotransferase, cytoso... [more]

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Properties
Property NameValue
Genbank descriptionC05073H04SK DroRLeaf1 Citrus clementina cDNA clone C05073H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295595 ID=CX295595; Name=CX295595; organism=Citrus clementina; type=EST; length=672bp
AGGCTTCTCGGTTATTAACTCTGCCAAAAGTCGTGAACACTGTTGCAAAT
AACAACACAAGAATCATGATTCTAAAGGATGGTGCTGCATGCCTCCGCAA
TTTGATCCACTTATTTCGACCTCCTTCTTCTTCTTTGACGTCCAAGCTTG
GAGCTTGCTATTTCTGTACATCTCATGTTGCCTCTCTGCAACAACCGGGC
AAACCCTCTGTTTTCAGTGATGATGAGTACGCTGATTTGGACTGGGATAA
TCTTGGATTTAGTATCAAGCCAGCTGATTATATGTACACCATGAAATGTT
CTAAACACGAAAATTTCAAACAAGGACAGCTTAGTCGGTACGCAAACATT
GAGCTAAGCCCTTCAGCAGCAGTCTTAAATTATGGACAGGGAGTGTACGA
AGGAACAAAAGCATACAGGACAGAAGATGGGCGTATTCTTCTCTTCCGGC
CAGATCTAAATGCTTCCCGTATGAAGATAGGTGCCGAGAGGATGTGCATG
CCGTCACCCTCCGTTGATCAGTTTGTCGACGCTGTGAAACAAATAGCTCT
TGCTAACAAGCGTTGGGTTCCTCCTCCAGGAAAAGGCACACTGTACATCA
GGCCATTGCTCATAGGAAGCGGCCCTGTGTTGGGTTTGGGTCCAGCACCT
GAATACACTTTCCTCGCATATG
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