CX295599

Overview
NameCX295599
Unique NameCX295599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYM_ASHGO (Serine hydroxymethyltransferase, mitochondrial OS=Ashbya gossypii GN=SHM1 PE=3 SV=1)

HSP 1 Score: 282.722 bits (722), Expect = 1.391e-75
Identity = 138/235 (58.72%), Postives = 185/235 (78.72%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNKLKDFVATTQSANFQS 723
            A +L+DMAH+SGLVAAGV PSPFEY+D+VTTTTHKSLRGPRGAMIF+RKG++++ K+G E+ YD +++IN +VFP  QGGPHNHTI+ LAVALKQA TPE+K YQ  V+ N   F + L + G+ LVSGGT+ HL+L++L    IDGSR+E +LE ++IAANKNT+PGD SA+ P G+R+GTPA+T+RGF   +F +VA + + AVKLA+ +KS+ +    KD  A T+ A+F+S
Sbjct:  238 AYLLSDMAHVSGLVAAGVHPSPFEYSDIVTTTTHKSLRGPRGAMIFYRKGIRKVTKKGTEIMYDLDKRINFSVFPAHQGGPHNHTISALAVALKQAATPEFKNYQTAVVENAKVFGEELSKRGFSLVSGGTDTHLLLIDLSPMGIDGSRLETILERLNIAANKNTIPGDKSALYPSGLRVGTPAMTTRGFGPAEFGRVAAYINEAVKLAIGLKSQ-EPVDAKD--AKTRLAHFKS 469          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYC_PONAB (Serine hydroxymethyltransferase, cytosolic OS=Pongo abelii GN=SHMT1 PE=2 SV=1)

HSP 1 Score: 282.337 bits (721), Expect = 1.816e-75
Identity = 135/217 (62.21%), Postives = 174/217 (80.18%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSET 666
            A ++ADMAHISGLVAAGV+PSPFE+  VVTTTTHK+LRG R  MIF+RKGV+ ++ K GKE+ Y+ E  IN AVFPGLQGGPHNH I G+AVALKQA T E+K YQ QV++NC   ++ L E+GY++V+GG++NHL+LV+L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +E+DF KVA+F    ++L ++I+S+T
Sbjct:  223 AYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVQSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTLEFKVYQHQVVANCRALSEALTELGYKIVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDRSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIELTLQIQSDT 439          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYD_SCHPO (Probable serine hydroxymethyltransferase, cytosolic OS=Schizosaccharomyces pombe GN=SPAC24C9.12c PE=2 SV=1)

HSP 1 Score: 281.567 bits (719), Expect = 3.098e-75
Identity = 136/228 (59.65%), Postives = 174/228 (76.32%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSE--TQGNKLKDFVA 696
            A ++ DMAHISGLV+AGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFR+G+++ +K+G  ++YD E+KIN +VFPG QGGPHNHTIT LAVALKQ   P YK YQ QV+ N     +   + GY+L + GT++H+VLV++K+K +DG+R E+VLE ++I  NKNTVP D SA  P GIR+GTPA+T+RGF E+DF +V  + D A+  A  ++ E     NKLKDF A
Sbjct:  209 AYLVVDMAHISGLVSAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRRGLRKHDKKGNPIYYDLEDKINFSVFPGHQGGPHNHTITALAVALKQCQEPAYKEYQAQVVKNAKVCEEEFKKRGYKLAADGTDSHMVLVDVKSKGVDGARAERVLELINIVTNKNTVPSDKSAFSPSGIRVGTPAMTTRGFKEQDFVRVVDYIDRALTFAANLQKELPKDANKLKDFKA 436          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYM_BOVIN (Serine hydroxymethyltransferase, mitochondrial OS=Bos taurus GN=SHMT2 PE=2 SV=1)

HSP 1 Score: 281.182 bits (718), Expect = 4.046e-75
Identity = 139/228 (60.96%), Postives = 177/228 (77.63%), Query Frame = 1
Query:   10 QTQAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNKLKDF 690
            + +A +LADMAHISGLVAA VIPSPF++AD+VTTTTHK+LRG R  +IF+RKGV+ ++ K G+E+ Y +E++IN AVFP LQGGPHNH I  +AVALKQA TP ++ Y  Q+L N    A  LLE GY LVSGGT+NHLVLV+L+ K +DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSRGF+E+DF KV  F D  V + +++KS+T   KL+DF
Sbjct:  243 EVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVQAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQILKNAQAMANALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRGFLEDDFRKVVGFIDEGVNIGLEVKSKT--TKLQDF 468          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYC_SHEEP (Serine hydroxymethyltransferase, cytosolic OS=Ovis aries GN=SHMT1 PE=1 SV=3)

HSP 1 Score: 280.796 bits (717), Expect = 5.284e-75
Identity = 141/239 (59.00%), Postives = 181/239 (75.73%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNK--LKDFVATTQSANFQSR 726
            A ++ADMAHISGLVAAGV+PSPFE+  VV+TTTHK+LRG R  MIF+RKGV+ ++ K GKE  Y+ E  IN AVFPGLQGGPHNH I G+AVALKQA TPE++AYQ QV++NC   A+ L+ +GY +V+GG++NHL+LV+L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA+F    ++L ++I+ +  G K  LK+F+     A    R
Sbjct:  223 AYLMADMAHISGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFRKVAHFIHRGIELTLQIQ-DAVGVKATLKEFMEKLAGAEEHQR 460          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYC_MOUSE (Serine hydroxymethyltransferase, cytosolic OS=Mus musculus GN=Shmt1 PE=1 SV=2)

HSP 1 Score: 280.796 bits (717), Expect = 5.284e-75
Identity = 135/215 (62.79%), Postives = 171/215 (79.53%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKS 660
            A ++ADMAHISGLVAAGV+PSPFE+  VVTTTTHK+LRG R  MIF+RKGV+ ++ K GKE +Y+ E  IN AVFPGLQGGPHNH I G+AVALKQA T E+K YQ QVL+NC   +  L E+GY++V+GG++NHL+L++L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA+F    ++L ++I+S
Sbjct:  217 AYLMADMAHISGLVAAGVVPSPFEHCHVVTTTTHKTLRGCRAGMIFYRKGVRSVDPKTGKETYYELESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTTEFKIYQLQVLANCRALSDALTELGYKIVTGGSDNHLILMDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQS 431          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYC_BOVIN (Serine hydroxymethyltransferase, cytosolic OS=Bos taurus GN=SHMT1 PE=2 SV=3)

HSP 1 Score: 278.87 bits (712), Expect = 2.008e-74
Identity = 139/239 (58.16%), Postives = 181/239 (75.73%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNK--LKDFVATTQSANFQSR 726
            A ++ADMAH+SGLVAAGV+PSPFE+  VV+TTTHK+LRG R  MIF+RKGV+ ++ K G+E  Y+ E  IN AVFPGLQGGPHNH I G+AVALKQA TPE++AYQ QV++NC   A+ L+ +GY +V+GG++NHL+LV+L++K  DG R EKVLEA  IA NKNT PGD SA+ P G+R+GTPALTSRG +EEDF KVA+F    ++L ++I+ +  G K  LK+F+     A    R
Sbjct:  223 AYLMADMAHVSGLVAAGVVPSPFEHCHVVSTTTHKTLRGCRAGMIFYRKGVRSVDPKTGRETRYNLESLINSAVFPGLQGGPHNHAIAGVAVALKQAMTPEFRAYQRQVVANCRALAEALMGLGYRVVTGGSDNHLILVDLRSKGTDGGRAEKVLEACSIACNKNTCPGDKSALRPSGLRLGTPALTSRGLLEEDFQKVAHFIHRGIELTLQIQ-DAVGVKATLKEFMEKLAGAEEHHR 460          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYM_HUMAN (Serine hydroxymethyltransferase, mitochondrial OS=Homo sapiens GN=SHMT2 PE=1 SV=3)

HSP 1 Score: 276.559 bits (706), Expect = 9.965e-74
Identity = 139/228 (60.96%), Postives = 175/228 (76.75%), Query Frame = 1
Query:   10 QTQAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNKLKDF 690
            + +A +LADMAHISGLVAA VIPSPF++AD+VTTTTHK+LRG R  +IF+RKGVK ++ K G+E+ Y +E++IN AVFP LQGGPHNH I  +AVALKQA TP ++ Y  QVL N    A  LLE GY LVSGGT+NHLVLV+L+ K +DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V  F D  V + +++KS+T   KL+DF
Sbjct:  243 EVKAHLLADMAHISGLVAAKVIPSPFKHADIVTTTTHKTLRGARSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKSKTA--KLQDF 468          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYM_RABIT (Serine hydroxymethyltransferase, mitochondrial OS=Oryctolagus cuniculus GN=SHMT2 PE=1 SV=2)

HSP 1 Score: 273.478 bits (698), Expect = 8.436e-73
Identity = 138/228 (60.53%), Postives = 174/228 (76.32%), Query Frame = 1
Query:   10 QTQAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEIN-KQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNKLKDF 690
            + +A +LADMAHISGLVAA VIPSPF++ADVVTTTTHK+LRG R  +IF+RKGV+ ++ K G+E+ Y +E++IN AVFP LQGGPHNH I  +AVALKQA TP ++ Y  QVL N    A  LLE GY LVSGGT+NHLVLV+L+ K +DG+R E+VLE V I ANKNT PGD SA+ PGG+R+G PALTSR F E+DF +V  F D  V + +++K +T   KL+DF
Sbjct:  243 EVKAHLLADMAHISGLVAAKVIPSPFKHADVVTTTTHKTLRGARSGLIFYRKGVRTVDPKTGQEIPYTFEDRINFAVFPSLQGGPHNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYSLVSGGTDNHLVLVDLRPKGLDGARAERVLELVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVNIGLEVKRKTA--KLQDF 468          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYC1_DICDI (Serine hydroxymethyltransferase 1 OS=Dictyostelium discoideum GN=shmt1 PE=1 SV=1)

HSP 1 Score: 232.261 bits (591), Expect = 2.155e-60
Identity = 118/226 (52.21%), Postives = 158/226 (69.91%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVF-YDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVKLAVKIKSETQGNKLKDFV 693
            A ++ DMAH SGLVAA ++ SPF+Y DVVT+TTHK+LRGPR  +IFFR+G K ++  GKE+  YD E KIN AVFP LQGGPH + I G+AVALK+A + E+K Y  QV  N +     L+  GY+LV+ GT+NHL+L +L+ K + G++ EK  +  +I  NKN V GD +A+ PGGIR+G+ ALTSRG  E DF K+A F D  V ++++I+    G KL DFV
Sbjct:  206 AYLMCDMAHYSGLVAAQLLDSPFDYCDVVTSTTHKTLRGPRSGIIFFRRG-KRVDGNGKEIEEYDIESKINFAVFPSLQGGPHENVIAGVAVALKEADSQEFKEYALQVKKNAAAIGNALMNKGYKLVTNGTDNHLILWDLRPKELTGNKFEKAADIANITVNKNAVHGDTNAISPGGIRIGSSALTSRGLKEADFEKIADFLDRIVSISLEIQGRV-GKKLVDFV 429          
The following BLAST results are available for this feature:
BLAST of CX295599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYM_ASHGO1.391e-7558.72Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_PONAB1.816e-7562.21Serine hydroxymethyltransferase, cytosolic OS=Pong... [more]
GLYD_SCHPO3.098e-7559.65Probable serine hydroxymethyltransferase, cytosoli... [more]
GLYM_BOVIN4.046e-7560.96Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC_SHEEP5.284e-7559.00Serine hydroxymethyltransferase, cytosolic OS=Ovis... [more]
GLYC_MOUSE5.284e-7562.79Serine hydroxymethyltransferase, cytosolic OS=Mus ... [more]
GLYC_BOVIN2.008e-7458.16Serine hydroxymethyltransferase, cytosolic OS=Bos ... [more]
GLYM_HUMAN9.965e-7460.96Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYM_RABIT8.436e-7360.53Serine hydroxymethyltransferase, mitochondrial OS=... [more]
GLYC1_DICDI2.155e-6052.21Serine hydroxymethyltransferase 1 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC05073H08SK DroRLeaf1 Citrus clementina cDNA clone C05073H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295599 ID=CX295599; Name=CX295599; organism=Citrus clementina; type=EST; length=736bp
AGGTTTGCACAAACACAAGCTATAATGTTGGCAGATATGGCACACATTAG
TGGTTTGGTTGCTGCTGGTGTCATCCCTTCACCTTTTGAGTATGCAGATG
TTGTGACCACCACAACTCACAAATCACTTCGTGGGCCACGTGGAGCCATG
ATTTTCTTTAGGAAGGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGT
GTTTTATGATTATGAAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCC
AAGGTGGCCCACACAACCACACAATTACTGGTTTAGCAGTTGCCTTGAAA
CAGGCCACTACTCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAA
TTGCTCGAAATTTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTT
CTGGTGGAACTGAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGA
ATTGATGGTTCCAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGC
CAACAAAAACACTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCA
TCAGGATGGGAACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGAT
TTTGCCAAGGTAGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAA
GATCAAGTCTGAAACTCAAGGAAACAAGTTGAAAGATTTCGTGGCCACCA
CACAGTCCGCTAACTTCCAATCCCGAGATGCGAAAC
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