CX295599

Overview
NameCX295599
Unique NameCX295599
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length736
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYA_CLOBH (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain Hall / ATCC 3502 / NCTC 13319 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.712e-49
Identity = 97/211 (45.97%), Postives = 137/211 (64.93%), Query Frame = 1
Query:   10 QTQAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 639
            +  A M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I  ++               Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  191 EIDAYMMVDMAHIAGLVATGLHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB6 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain 657 / Type Ba4) GN=glyA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.712e-49
Identity = 97/211 (45.97%), Postives = 137/211 (64.93%), Query Frame = 1
Query:   10 QTQAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 639
            +  A M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I  ++               Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  191 EIDAYMMVDMAHIAGLVATGLHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYA_CLOB1 (Serine hydroxymethyltransferase OS=Clostridium botulinum (strain ATCC 19397 / Type A) GN=glyA PE=3 SV=1)

HSP 1 Score: 196.052 bits (497), Expect = 1.712e-49
Identity = 97/211 (45.97%), Postives = 137/211 (64.93%), Query Frame = 1
Query:   10 QTQAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAYFFDAAVK 639
            +  A M+ DMAHI+GLVA G+ PSP  YAD VTTTTHK+LRGPRG  I  ++               Y + +++A+FPG+QGGP  HTI   AV   +A   +YK Y +QV+ N     + L   G+ L+SGGT+NHL+L++L NK I G   EK+L++V I  NKNT+P + +S  +  GIR+GTPA+T+RGF EE+  K+AYF + +++
Sbjct:  191 EIDAYMMVDMAHIAGLVATGLHPSPVPYADFVTTTTHKTLRGPRGGAILCKE--------------KYAKAVDKAIFPGIQGGPLMHTIAAKAVCFGEALREDYKEYMQQVVKNTKVLGEELKNYGFRLISGGTDNHLLLIDLTNKNITGKDAEKLLDSVGITVNKNTIPFETLSPFITSGIRIGTPAVTTRGFKEEEMKKIAYFMNYSIE 387          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYA_DESAA (Serine hydroxymethyltransferase OS=Desulfatibacillum alkenivorans (strain AK-01) GN=glyA PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.236e-49
Identity = 101/203 (49.75%), Postives = 133/203 (65.52%), Query Frame = 1
Query:   10 QTQAIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVSA-MVPGGIRMGTPALTSRGFVEEDFAKVA 615
            +T A ++ DMAHI+GLVAAG  PSP  YADVVTTTTHK+LRGPRG MI   KG              + +K++  +FPG+QGGP  H I   AVA K+A TPE+KAYQ+QV+ N +  A+ L++ G +LVSGGT+NH++L+NL N  I G   E ++E   I  NKNT+P D +   V  GIR+GTP +TSRG  E +   +A
Sbjct:  191 ETGAYLMVDMAHIAGLVAAGEHPSPLPYADVVTTTTHKTLRGPRGGMILSNKG--------------FGKKLSSQIFPGIQGGPLMHVIAAKAVAFKEALTPEFKAYQQQVVKNAACLAKRLMDNGVDLVSGGTDNHMMLLNLSNLDITGKEAEGLVEQAGITVNKNTIPFDKNGPAVTSGIRVGTPTITSRGMKEPEMELIA 379          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYA_CLOCE (Serine hydroxymethyltransferase OS=Clostridium cellulolyticum (strain ATCC 35319 / DSM 5812 / JCM 6584 / H10) GN=glyA PE=3 SV=1)

HSP 1 Score: 195.667 bits (496), Expect = 2.236e-49
Identity = 101/200 (50.50%), Postives = 131/200 (65.50%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDV-SAMVPGGIRMGTPALTSRGFVEEDFAKVA 615
            AI++ DMAHI+GLVAAGV PSP  YADVVTTTTHK+LRGPRG MI  ++              +Y +KI+ AVFPG QGGP  H I   AV+ K+A T ++K YQ+ ++ N    A  L+E G++LVS GT+NHL+L+NL N  I G   +  L+ V I  NKN +P D  S  +  GIR+GTPA+TSRG  EED  ++A
Sbjct:  195 AILMVDMAHIAGLVAAGVHPSPVPYADVVTTTTHKTLRGPRGGMILCKQ--------------EYAKKIDSAVFPGNQGGPLMHVIAAKAVSFKEALTDDFKIYQQNIVKNAKALASALMEKGFKLVSDGTDNHLMLINLTNMNITGKEAQHKLDEVCITCNKNGIPFDTQSPFITSGIRLGTPAVTSRGMNEEDMKEIA 380          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYA1_RALSO (Serine hydroxymethyltransferase 1 OS=Ralstonia solanacearum GN=glyA1 PE=3 SV=1)

HSP 1 Score: 195.282 bits (495), Expect = 2.920e-49
Identity = 100/201 (49.75%), Postives = 131/201 (65.17%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEEDFAKVAY 618
            A  + DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +               ++E+ IN A+FPG+QGGP  H I G AVA K+A +P +KAYQEQV+ N    A+TL+  G  +VSG TE+H++LV+L+ K I G   EKVL   HI  NKN +P D     V  GIR+G+PA+T+RGF E +  KVA+
Sbjct:  196 AYFMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EHEKAINSAIFPGIQGGPLMHVIAGKAVAFKEAQSPTFKAYQEQVVKNARAMAETLMARGLRIVSGRTESHVMLVDLRAKSITGKEAEKVLGDAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEGEAVKVAH 382          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYA_DICT6 (Serine hydroxymethyltransferase OS=Dictyoglomus thermophilum (strain ATCC 35947 / DSM 3960 / H-6-12) GN=glyA PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.504e-49
Identity = 107/224 (47.77%), Postives = 140/224 (62.50%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGDVS-AMVPGGIRMGTPALTSRGFVEEDFAKVA--------YFFDAAVKLAVKIKSE 663
            A  + DMAHI+GLVAAG+ PSP  YA  VT+TTHK+LRGPRG  I  +K              ++ ++I++AVFPG+QGGP  H I   AVA K+A TPE+K YQ+Q++ N    A+ L+ +GY LVSGGT+NHL+LV+L++K I G   EK LE   I  NKN +P D     V  GIR+GTPALT+RG  E++   VA         F D+ VK  VK + E
Sbjct:  192 AYFMVDMAHIAGLVAAGLHPSPVPYAHFVTSTTHKTLRGPRGGFILCKK--------------EFAKEIDKAVFPGIQGGPLMHVIAAKAVAFKEAMTPEFKEYQKQIILNAKAMAEELMRLGYRLVSGGTDNHLMLVDLRDKGITGKEAEKALEEAGITVNKNAIPFDPQPPTVTSGIRIGTPALTTRGMKEDEMRYVARLIHEVLSNFKDSKVKEKVKKEVE 401          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYA1_RALEJ (Serine hydroxymethyltransferase 1 OS=Ralstonia eutropha (strain JMP134) GN=glyA1 PE=3 SV=1)

HSP 1 Score: 194.126 bits (492), Expect = 6.504e-49
Identity = 96/195 (49.23%), Postives = 130/195 (66.67%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 600
            A  + DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +               ++E+ IN ++FPG+QGGP  H I G AVA K+A TPE+KAYQEQV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K I G   E++L   H+  NKN +P D     V  GIR+G+PA+T+RGF EE+
Sbjct:  196 AYFMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EHEKAINSSIFPGIQGGPLMHVIAGKAVAFKEALTPEFKAYQEQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHLTVNKNAIPNDPEKPFVTSGIRVGSPAMTTRGFKEEE 376          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYA_RALEH (Serine hydroxymethyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=glyA PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.109e-48
Identity = 96/195 (49.23%), Postives = 129/195 (66.15%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 600
            A  + DMAH +GL+AAGV P+P  +AD VTTTTHKSLRGPRG +I  +               ++E+ IN A+FPG+QGGP  H I G AVA K+A TPE+K YQ+QV+ N +  A+TL+  G  +VSG TE+H++LV+L+ K I G   E++L   HI  NKN +P D     V  GIR+G+PA+T+RGF EE+
Sbjct:  196 AYFMVDMAHYAGLIAAGVYPNPVPHADFVTTTTHKSLRGPRGGVILMKA--------------EHEKAINSAIFPGIQGGPLMHVIAGKAVAFKEALTPEFKEYQQQVVKNAAVLAETLIARGLRIVSGRTESHVMLVDLRAKNITGKEAERILGEAHITVNKNAIPNDPEKPFVTSGIRLGSPAMTTRGFKEEE 376          
BLAST of CX295599 vs. ExPASy Swiss-Prot
Match: GLYA_ACIAC (Serine hydroxymethyltransferase OS=Acidovorax avenae subsp. citrulli (strain AAC00-1) GN=glyA PE=3 SV=1)

HSP 1 Score: 193.356 bits (490), Expect = 1.109e-48
Identity = 99/195 (50.77%), Postives = 128/195 (65.64%), Query Frame = 1
Query:   19 AIMLADMAHISGLVAAGVIPSPFEYADVVTTTTHKSLRGPRGAMIFFRKGVKEINKQGKEVFYDYEEKINQAVFPGLQGGPHNHTITGLAVALKQATTPEYKAYQEQVLSNCSKFAQTLLEMGYELVSGGTENHLVLVNLKNKRIDGSRVEKVLEAVHIAANKNTVPGD-VSAMVPGGIRMGTPALTSRGFVEED 600
            AI   D+AH +GLV AG  P+P  +ADVVT+TTHKSLRGPRG +I  +               ++E+ IN A+FPGLQGGP  H I   AVA K+A TPE+KAYQ+QV  N   FA+TL+E G  ++SG TE+H++LV+L+ K I G   E  L   HI  NKN++P D    MV  GIR+GTPA+T+RGF EE+
Sbjct:  195 AIFWVDIAHYAGLVVAGEYPNPVPFADVVTSTTHKSLRGPRGGIILMKA--------------EHEKAINSAIFPGLQGGPLEHVIAAKAVAFKEALTPEFKAYQQQVAKNAKVFAETLIERGLRIISGRTESHVMLVDLRAKGITGKAAEAALGQAHITINKNSIPNDPEKPMVTSGIRVGTPAITTRGFKEEE 375          
The following BLAST results are available for this feature:
BLAST of CX295599 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
GLYA_CLOBH1.712e-4945.97Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB61.712e-4945.97Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_CLOB11.712e-4945.97Serine hydroxymethyltransferase OS=Clostridium bot... [more]
GLYA_DESAA2.236e-4949.75Serine hydroxymethyltransferase OS=Desulfatibacill... [more]
GLYA_CLOCE2.236e-4950.50Serine hydroxymethyltransferase OS=Clostridium cel... [more]
GLYA1_RALSO2.920e-4949.75Serine hydroxymethyltransferase 1 OS=Ralstonia sol... [more]
GLYA_DICT66.504e-4947.77Serine hydroxymethyltransferase OS=Dictyoglomus th... [more]
GLYA1_RALEJ6.504e-4949.23Serine hydroxymethyltransferase 1 OS=Ralstonia eut... [more]
GLYA_RALEH1.109e-4849.23Serine hydroxymethyltransferase OS=Ralstonia eutro... [more]
GLYA_ACIAC1.109e-4850.77Serine hydroxymethyltransferase OS=Acidovorax aven... [more]

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Properties
Property NameValue
Genbank descriptionC05073H08SK DroRLeaf1 Citrus clementina cDNA clone C05073H08, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295599 ID=CX295599; Name=CX295599; organism=Citrus clementina; type=EST; length=736bp
AGGTTTGCACAAACACAAGCTATAATGTTGGCAGATATGGCACACATTAG
TGGTTTGGTTGCTGCTGGTGTCATCCCTTCACCTTTTGAGTATGCAGATG
TTGTGACCACCACAACTCACAAATCACTTCGTGGGCCACGTGGAGCCATG
ATTTTCTTTAGGAAGGGAGTGAAAGAGATTAACAAACAAGGGAAGGAGGT
GTTTTATGATTATGAAGAAAAAATAAATCAAGCTGTCTTTCCTGGACTCC
AAGGTGGCCCACACAACCACACAATTACTGGTTTAGCAGTTGCCTTGAAA
CAGGCCACTACTCCAGAGTATAAAGCCTATCAAGAGCAAGTTCTGAGCAA
TTGCTCGAAATTTGCACAGACTCTGCTCGAGATGGGCTATGAACTTGTTT
CTGGTGGAACTGAGAACCATCTAGTGTTGGTGAATTTGAAAAACAAGAGA
ATTGATGGTTCCAGAGTTGAAAAAGTGTTGGAAGCTGTTCATATTGCAGC
CAACAAAAACACTGTTCCTGGGGATGTGTCAGCCATGGTTCCAGGTGGCA
TCAGGATGGGAACTCCGGCTCTTACTTCTAGGGGATTTGTTGAGGAGGAT
TTTGCCAAGGTAGCATATTTCTTTGATGCTGCTGTGAAGTTGGCTGTGAA
GATCAAGTCTGAAACTCAAGGAAACAAGTTGAAAGATTTCGTGGCCACCA
CACAGTCCGCTAACTTCCAATCCCGAGATGCGAAAC
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