CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEFS (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain SBW25) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.454e-15
Identity = 36/75 (48.00%), Postives = 54/75 (72.00%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   ++P TPLLD    P+ ++ L + +LE LA ELR +++ +V +TGGH  A LGV+ELT+ALH VF+TPDD++
Sbjct:    7 EIPRKRPSTPLLDRAVTPVGLRRLGEAELETLADELRLELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRL 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_LEPCP (1-deoxy-D-xylulose-5-phosphate synthase OS=Leptothrix cholodnii (strain ATCC 51168 / LMG 8142 / SP-6) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.454e-15
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  I  P  ++ LS+ +L+QLA ELR  ++ SVS+TGGHLS+NLG VELT+ALH VF+TP+D++
Sbjct:    5 PLLPRIQSPADVRRLSRAELKQLADELREFVLQSVSRTGGHLSSNLGTVELTVALHHVFDTPEDRL 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_CAUSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Caulobacter sp. (strain K31) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.454e-15
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 3
Query:  291 TPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDD 485
            TPLLDTI+ P   +  S  +L+QLA+E+RA+ +++VS TGGHL A LGVVELT+ALH VF TP D
Sbjct:    5 TPLLDTISSPADTRGFSVAELKQLASEVRAETIDAVSVTGGHLGAGLGVVELTVALHHVFETPKD 69          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BORA1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bordetella avium (strain 197N) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.454e-15
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  291 TPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            T  LD I+ P  ++ L + DL+ +A ELRA ++ SVSKTGGHLS+NLG VELTLALH VF+TP D+I
Sbjct:    3 TEHLDRIHSPADLRKLDRRDLKPIADELRAFVLESVSKTGGHLSSNLGTVELTLALHYVFDTPHDRI 69          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_ACISJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Acidovorax sp. (strain JS42) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.454e-15
Identity = 38/66 (57.58%), Postives = 52/66 (78.79%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL+ +N P  ++ L + +L+ LA ELRA ++ SVSKTGGHLS+NLG VELT+ALH VF+TP D++
Sbjct:    7 PLLERVNDPADLRRLPRAELKTLAHELRAFVLESVSKTGGHLSSNLGTVELTVALHAVFDTPRDRL 72          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS2_STRCO (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Streptomyces coelicolor GN=dxs2 PE=3 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 3.454e-15
Identity = 41/66 (62.12%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  I  P  +  LS E+L QLA E+R  +V++VSKTGGHL  NLGVVELTLALHRVF +P DK+
Sbjct:    2 PLLTRITGPRDLDRLSLEELTQLAEEIRTFLVDAVSKTGGHLGPNLGVVELTLALHRVFESPKDKV 67          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_RALPJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia pickettii (strain 12J) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.512e-15
Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL+TI+ P  ++ L +  L  LA ELRA +++SVS+TGGHLS+NLG VELT+ALH VFNTP+D+I
Sbjct:    5 LLNTIDDPADLRRLDRRQLGPLANELRAFVLDSVSQTGGHLSSNLGTVELTIALHYVFNTPEDRI 69          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_RALEH (1-deoxy-D-xylulose-5-phosphate synthase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=dxs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.512e-15
Identity = 38/65 (58.46%), Postives = 51/65 (78.46%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL+ I+ P  ++ L + +L  LA ELRA ++ SVS+TGGHLS+NLG VELT+ALH VFNTPDD++
Sbjct:    5 LLNKIDAPADLRKLDRRELRTLADELRAYVLESVSQTGGHLSSNLGTVELTIALHYVFNTPDDRL 69          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BARQU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella quintana GN=dxs PE=3 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 4.512e-15
Identity = 40/67 (59.70%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  291 TPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            TPLLD I  P  ++ L + DL +LA ELR + +++VS TGGHL A LGVVELT+ALH VFNTP+D+I
Sbjct:    6 TPLLDRICLPQDLRALPESDLVRLADELRTETIDAVSVTGGHLGAGLGVVELTVALHYVFNTPEDRI 72          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEF5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.695e-15
Identity = 36/75 (48.00%), Postives = 53/75 (70.67%), Query Frame = 3
Query:  267 DFSEEKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +   ++P TPLLD    P  ++ L + +LE LA ELR +++ +V +TGGH  A LGV+ELT+ALH VF+TPDD++
Sbjct:    7 EIPRKRPTTPLLDRAQTPDGLRRLGEAELETLADELRLELLYTVGQTGGHFGAGLGVIELTIALHYVFDTPDDRL 81          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_PSEFS3.454e-1548.001-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_LEPCP3.454e-1557.581-deoxy-D-xylulose-5-phosphate synthase OS=Leptoth... [more]
DXS_CAUSK3.454e-1560.001-deoxy-D-xylulose-5-phosphate synthase OS=Cauloba... [more]
DXS_BORA13.454e-1559.701-deoxy-D-xylulose-5-phosphate synthase OS=Bordete... [more]
DXS_ACISJ3.454e-1557.581-deoxy-D-xylulose-5-phosphate synthase OS=Acidovo... [more]
DXS2_STRCO3.454e-1562.121-deoxy-D-xylulose-5-phosphate synthase 2 OS=Strep... [more]
DXS_RALPJ4.512e-1560.001-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_RALEH4.512e-1558.461-deoxy-D-xylulose-5-phosphate synthase OS=Ralston... [more]
DXS_BARQU4.512e-1559.701-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_PSEF57.695e-1548.001-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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