CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_NEIMB (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup B GN=dxs PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.695e-15
Identity = 36/68 (52.94%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  288 PTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P+PLLD I+ P  ++ L K+ L +LA ELR  ++ SV +TGGH ++NLG VELT+ALH V++TP+DK+
Sbjct:    3 PSPLLDLIDSPQDLRRLDKKQLPRLAGELRTFLLESVGQTGGHFASNLGAVELTIALHYVYDTPEDKL 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_NEIM0 (1-deoxy-D-xylulose-5-phosphate synthase OS=Neisseria meningitidis serogroup C (strain 053442) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.695e-15
Identity = 36/68 (52.94%), Postives = 52/68 (76.47%), Query Frame = 3
Query:  288 PTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P+PLLD I+ P  ++ L K+ L +LA ELR  ++ SV +TGGH ++NLG VELT+ALH V++TP+DK+
Sbjct:    3 PSPLLDLIDSPQDLRRLDKKQLPRLAGELRTFLLESVGQTGGHFASNLGAVELTIALHYVYDTPEDKL 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_DESPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Desulfotalea psychrophila GN=dxs PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.695e-15
Identity = 39/65 (60.00%), Postives = 52/65 (80.00%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LLD ++ P  ++ L+ +DL  LAAE+R  I+++VSKTGGHL+ +LGVVELTLALH VFNTP DK+
Sbjct:   13 LLDRVDSPKDIRQLTHDDLIILAAEIREKIIDTVSKTGGHLAPSLGVVELTLALHYVFNTPTDKL 77          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS2_STRAW (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Streptomyces avermitilis GN=dxs2 PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 7.695e-15
Identity = 39/66 (59.09%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  I  P  +  LS E L+QLA E+R  +V++VSKTGGHL  NLGVVELT+ALHRVF++P D++
Sbjct:    2 PLLTRIRGPRDLDRLSLEQLDQLAEEIRTFLVDAVSKTGGHLGPNLGVVELTIALHRVFDSPKDRV 67          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_THETN (1-deoxy-D-xylulose-5-phosphate synthase OS=Thermoanaerobacter tengcongensis GN=dxs PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14
Identity = 39/65 (60.00%), Postives = 50/65 (76.92%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L+ IN P  +K L  +DL +L+ E+R  IV  VSKTGGHL++NLG+VELTLALH VFN+P DKI
Sbjct:    1 MLEQINSPYDLKKLDIKDLPRLSEEIRQFIVEKVSKTGGHLASNLGIVELTLALHYVFNSPVDKI 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_RHOFD (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoferax ferrireducens (strain DSM 15236 / ATCC BAA-621 / T118) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL TIN P  ++ + +  L  LA ELRA +++SV+KTGGHLS+NLG VELT+ALH VFNTP D++
Sbjct:    7 PLLHTINDPADLRLVPRAQLGALADELRAYLLHSVAKTGGHLSSNLGTVELTVALHYVFNTPHDRV 72          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSEU5 (1-deoxy-D-xylulose-5-phosphate synthase OS=Pseudomonas stutzeri (strain A1501) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14
Identity = 35/70 (50.00%), Postives = 52/70 (74.29%), Query Frame = 3
Query:  282 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +P TP+LD    P  ++ L + +LE+LA ELR +++ SV +TGGH  A LGV+ELT+ALH V++TPDD++
Sbjct:   12 RPATPVLDRAATPEQLRRLGEAELEELANELRQELLYSVGRTGGHFGAGLGVIELTIALHYVYDTPDDRL 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_HAHCH (1-deoxy-D-xylulose-5-phosphate synthase OS=Hahella chejuensis (strain KCTC 2396) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14
Identity = 38/70 (54.29%), Postives = 53/70 (75.71%), Query Frame = 3
Query:  282 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +P TPLLD I+ P  ++ L++ +L QLA ELRA ++ SV ++GGH  A LGVVELT+ALH  FNTP+D++
Sbjct:   14 RPNTPLLDKIDSPAQLRLLNEAELLQLAHELRAFLLYSVGQSGGHFGAGLGVVELTVALHYAFNTPEDRL 83          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BART1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Bartonella tribocorum (strain CIP 105476 / IBS 506) GN=dxs PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.005e-14
Identity = 38/67 (56.72%), Postives = 51/67 (76.12%), Query Frame = 3
Query:  291 TPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            TPLLD + +P  ++ L +  L QLA ELR + +++VS TGGHL A LGVVELT+ALH +FNTP+D+I
Sbjct:    6 TPLLDRVCFPQDLRALPESYLVQLANELRTETIDAVSVTGGHLGAGLGVVELTVALHYIFNTPEDRI 72          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MARMS (1-deoxy-D-xylulose-5-phosphate synthase OS=Marinomonas sp. (strain MWYL1) GN=dxs PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 1.313e-14
Identity = 37/70 (52.86%), Postives = 49/70 (70.00%), Query Frame = 3
Query:  282 KPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +P TPLLD +N P  ++   KE L  L  ELR  ++ SV +TGGH  A LGVVELT+ALH ++NTP+D+I
Sbjct:    9 RPDTPLLDEVNSPADLRAFKKEQLPALVRELREFMLYSVGQTGGHFGAGLGVVELTVALHYLYNTPEDRI 78          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_NEIMB7.695e-1552.941-deoxy-D-xylulose-5-phosphate synthase OS=Neisser... [more]
DXS_NEIM07.695e-1552.941-deoxy-D-xylulose-5-phosphate synthase OS=Neisser... [more]
DXS_DESPS7.695e-1560.001-deoxy-D-xylulose-5-phosphate synthase OS=Desulfo... [more]
DXS2_STRAW7.695e-1559.091-deoxy-D-xylulose-5-phosphate synthase 2 OS=Strep... [more]
DXS_THETN1.005e-1460.001-deoxy-D-xylulose-5-phosphate synthase OS=Thermoa... [more]
DXS_RHOFD1.005e-1459.091-deoxy-D-xylulose-5-phosphate synthase OS=Rhodofe... [more]
DXS_PSEU51.005e-1450.001-deoxy-D-xylulose-5-phosphate synthase OS=Pseudom... [more]
DXS_HAHCH1.005e-1454.291-deoxy-D-xylulose-5-phosphate synthase OS=Hahella... [more]
DXS_BART11.005e-1456.721-deoxy-D-xylulose-5-phosphate synthase OS=Bartone... [more]
DXS_MARMS1.313e-1452.861-deoxy-D-xylulose-5-phosphate synthase OS=Marinom... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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