CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_ACTP7 (1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus pleuropneumoniae serotype 7 (strain AP76) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.203e-13
Identity = 36/66 (54.55%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  IN P  ++ L+KE L+ +A ELRA ++ SVS+T GHL++ LGVVELT+ALH V+ TP D++
Sbjct:    6 PLLSQINSPEDLRLLAKEQLQSVADELRAYLLESVSQTSGHLASGLGVVELTVALHYVYQTPFDQL 71          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_ACTP2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Actinobacillus pleuropneumoniae serotype 5b (strain L20) GN=dxs PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 7.203e-13
Identity = 36/66 (54.55%), Postives = 50/66 (75.76%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  IN P  ++ L+KE L+ +A ELRA ++ SVS+T GHL++ LGVVELT+ALH V+ TP D++
Sbjct:    6 PLLSQINSPEDLRLLAKEQLQSVADELRAYLLESVSQTSGHLASGLGVVELTVALHYVYQTPFDQL 71          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_STRC1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Streptomyces sp. (strain CL190) GN=dxs PE=1 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.407e-13
Identity = 34/65 (52.31%), Postives = 49/65 (75.38%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L+ I  P  +K L +E L +L+ E+R  +V++V++TGGHL  NLGVVELT+ALHRVF +P D+I
Sbjct:    3 ILENIRQPRDLKALPEEQLHELSEEIRQFLVHAVTRTGGHLGPNLGVVELTIALHRVFESPVDRI 67          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PSYA2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Psychrobacter arcticus (strain DSM 17307 / 273-4) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.407e-13
Identity = 35/71 (49.30%), Postives = 48/71 (67.61%), Query Frame = 3
Query:  279 EKPPTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            E+P TPLLD ++ P  +K  S  DL  LA ELR  ++ S  ++GGH  ANLGV+ELT+ALH + + P D+I
Sbjct:   37 ERPYTPLLDRVDSPADLKAFSTADLIALADELRLFVLYSAGQSGGHFGANLGVIELTIALHYLLDAPQDQI 107          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MYCTU (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium tuberculosis GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.407e-13
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L  I  P  +++LS+  L +LAAE+R  +++ V+ TGGHL  NLGVVELTLALHRVF++P D I
Sbjct:    1 MLQQIRGPADLQHLSQAQLRELAAEIREFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPI 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MYCTA (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.407e-13
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L  I  P  +++LS+  L +LAAE+R  +++ V+ TGGHL  NLGVVELTLALHRVF++P D I
Sbjct:    1 MLQQIRGPADLQHLSQAQLRELAAEIREFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPI 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MYCBT (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium bovis (strain BCG / Tokyo 172 / ATCC 35737 / TMC 1019) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.407e-13
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L  I  P  +++LS+  L +LAAE+R  +++ V+ TGGHL  NLGVVELTLALHRVF++P D I
Sbjct:    1 MLQQIRGPADLQHLSQAQLRELAAEIREFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPI 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MYCBP (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.407e-13
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L  I  P  +++LS+  L +LAAE+R  +++ V+ TGGHL  NLGVVELTLALHRVF++P D I
Sbjct:    1 MLQQIRGPADLQHLSQAQLRELAAEIREFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPI 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MYCBO (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium bovis GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.407e-13
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L  I  P  +++LS+  L +LAAE+R  +++ V+ TGGHL  NLGVVELTLALHRVF++P D I
Sbjct:    1 MLQQIRGPADLQHLSQAQLRELAAEIREFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPI 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_IDILO (1-deoxy-D-xylulose-5-phosphate synthase OS=Idiomarina loihiensis GN=dxs PE=3 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 9.407e-13
Identity = 33/66 (50.00%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLLD IN P  ++ L +  L +L AE+R  ++ SVS++ GHL++ LG VELT+ALH V++TP+DK+
Sbjct:    6 PLLDKINSPADLRRLPRTQLPELCAEIRQFLLTSVSQSSGHLASGLGTVELTVALHYVYHTPEDKL 71          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_ACTP77.203e-1354.551-deoxy-D-xylulose-5-phosphate synthase OS=Actinob... [more]
DXS_ACTP27.203e-1354.551-deoxy-D-xylulose-5-phosphate synthase OS=Actinob... [more]
DXS_STRC19.407e-1352.311-deoxy-D-xylulose-5-phosphate synthase OS=Strepto... [more]
DXS_PSYA29.407e-1349.301-deoxy-D-xylulose-5-phosphate synthase OS=Psychro... [more]
DXS_MYCTU9.407e-1353.851-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCTA9.407e-1353.851-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCBT9.407e-1353.851-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCBP9.407e-1353.851-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCBO9.407e-1353.851-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_IDILO9.407e-1350.001-deoxy-D-xylulose-5-phosphate synthase OS=Idiomar... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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