CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MYCVP (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium vanbaalenii (strain DSM 7251 / PYR-1) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 35/65 (53.85%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L+ I  P  +++LS+  LE LA E+R  +++ V+ TGGHL  NLGVVELTLALHRVF++P D I
Sbjct:    1 MLEQIRGPADLQHLSQAQLEDLAHEIRDFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPI 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MYCGI (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium gilvum (strain PYR-GCK) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L+ I  P  +++LS+  +E LA E+R  +++ V+ TGGHL  NLGVVELTLALHRVF++P D I
Sbjct:    1 MLEQIRGPADLQHLSRAQMEDLAREIRDFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPI 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_KOCRD (1-deoxy-D-xylulose-5-phosphate synthase OS=Kocuria rhizophila (strain ATCC 9341 / DSM 348 / NBRC 103217 / DC2201) GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL++I  P  +K L    +EQLA E+R  +++ VS TGGHL  NLGVVELTLA+HRVF++P D +
Sbjct:    3 LLESIEGPEDLKGLDAAAMEQLAGEIRDFLISHVSATGGHLGPNLGVVELTLAVHRVFSSPRDSV 67          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_HAEDU (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus ducreyi GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 36/66 (54.55%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  I+ P  ++ L KEDL  LA ELR  +++SVS+T GHL++ LGVVELT+ALH V+ TP D++
Sbjct:    6 PLLSQIDSPEDLRLLGKEDLSALANELRTYLLDSVSQTSGHLASGLGVVELTVALHYVYQTPFDQL 71          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BACHD (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus halodurans GN=dxs PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 33/64 (51.56%), Postives = 50/64 (78.12%), Query Frame = 3
Query:  300 LDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            L+ ++ P  +K+++K++LEQLA E+R  ++  +S TGGHL  NLGVVELTLALH +F++P DK+
Sbjct:    3 LEKLHDPSLIKSMTKQELEQLAEEIRQFLIEKLSITGGHLGPNLGVVELTLALHSLFDSPKDKL 66          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS2_GEOSL (1-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geobacter sulfurreducens GN=dxs2 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.605e-12
Identity = 34/65 (52.31%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +LD ++ P  +K L+  +L  LA E+R +I+   S+ GGHL+ +LGVVELTLALHRVF +P+DKI
Sbjct:    4 ILDRVDSPSDLKGLTTAELGILAEEIRQEIITVCSRNGGHLAPSLGVVELTLALHRVFTSPEDKI 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_LYSSC (1-deoxy-D-xylulose-5-phosphate synthase OS=Lysinibacillus sphaericus (strain C3-41) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12
Identity = 32/63 (50.79%), Postives = 47/63 (74.60%), Query Frame = 3
Query:  300 LDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            L+ I  P  +KNL+K++LEQ+A E+R  ++   S TGGH+  NLGVVELT+ LH++F++P DK
Sbjct:    3 LNKITSPSFLKNLNKKELEQVAQEIRTFLIEKCSVTGGHIGPNLGVVELTMMLHKMFDSPKDK 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_GEOKA (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus kaustophilus GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12
Identity = 32/61 (52.46%), Postives = 49/61 (80.33%), Query Frame = 3
Query:  309 INYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            I++P  +KN+S  +L++L+AE+R  ++  +SKTGGH+  NLGVVELT+ALHR F++P DK+
Sbjct:    4 IDHPRVVKNMSIPELKRLSAEIRRFLIEKLSKTGGHIGPNLGVVELTIALHREFDSPKDKL 64          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_COLP3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Colwellia psychrerythraea (strain 34H / ATCC BAA-681) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12
Identity = 32/66 (48.48%), Postives = 49/66 (74.24%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  IN P  ++N+ +E L +++ ELR+ ++NSVSK+ GH ++ LG +ELT+ALH V+NTP D +
Sbjct:    9 PLLSQINIPEDLRNMPQEQLTRISNELRSFLLNSVSKSSGHFASGLGTIELTVALHYVYNTPFDHL 74          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_ARTAT (1-deoxy-D-xylulose-5-phosphate synthase OS=Arthrobacter aurescens (strain TC1) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.096e-12
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL+T+  P  +  LS  +LEQLA E+R  ++ +V+ TGGHL  NLGVVELTLA+HR F++P D I
Sbjct:    3 LLETVKDPRDLAKLSGTELEQLAGEIREFLITNVAATGGHLGPNLGVVELTLAVHRNFDSPRDSI 67          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_MYCVP1.605e-1253.851-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCGI1.605e-1252.311-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_KOCRD1.605e-1253.851-deoxy-D-xylulose-5-phosphate synthase OS=Kocuria... [more]
DXS_HAEDU1.605e-1254.551-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_BACHD1.605e-1251.561-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS2_GEOSL1.605e-1252.311-deoxy-D-xylulose-5-phosphate synthase 2 OS=Geoba... [more]
DXS_LYSSC2.096e-1250.791-deoxy-D-xylulose-5-phosphate synthase OS=Lysinib... [more]
DXS_GEOKA2.096e-1252.461-deoxy-D-xylulose-5-phosphate synthase OS=Geobaci... [more]
DXS_COLP32.096e-1248.481-deoxy-D-xylulose-5-phosphate synthase OS=Colwell... [more]
DXS_ARTAT2.096e-1253.851-deoxy-D-xylulose-5-phosphate synthase OS=Arthrob... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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