CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_HAEI8 (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus influenzae (strain 86-028NP) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.737e-12
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  IN P  ++ L+K+ L QL  ELRA ++ SVS+T GHL++ LG VELT+ALH V+ TP D++
Sbjct:    9 PLLSLINSPEDLRLLNKDQLPQLCQELRAYLLESVSQTSGHLASGLGTVELTVALHYVYKTPFDQL 74          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_ALISL (1-deoxy-D-xylulose-5-phosphate synthase OS=Aliivibrio salmonicida (strain LFI1238) GN=dxs PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 2.737e-12
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P+L   N P  +++L KE L  L  ELRA ++ SVSK+ GHL++ LGVVELT+ALH V+NTP D++
Sbjct:    9 PILALANTPDELRSLPKESLPALCDELRAYLLKSVSKSSGHLASGLGVVELTVALHYVYNTPFDQL 74          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MYCSS (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain MCS) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L+ I  P  +++LS+  L +LA E+R  +++ V+ TGGHL  NLGVVELTLALHRVF++P D +
Sbjct:    1 MLEQIRGPADLQHLSQSALSELAGEIRQFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPL 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MYCSK (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain KMS) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L+ I  P  +++LS+  L +LA E+R  +++ V+ TGGHL  NLGVVELTLALHRVF++P D +
Sbjct:    1 MLEQIRGPADLQHLSQSALSELAGEIRQFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPL 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MYCSJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium sp. (strain JLS) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12
Identity = 33/65 (50.77%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L+ I  P  +++LS+  L +LA E+R  +++ V+ TGGHL  NLGVVELTLALHRVF++P D +
Sbjct:    1 MLEQIRGPADLQHLSQSALSELAGEIRQFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPL 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MYCS2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium smegmatis GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12
Identity = 33/65 (50.77%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L+ +  P  +++LS+  L  LA E+R  +++ V+ TGGHL  NLGVVELTLALHRVF++P D I
Sbjct:    1 MLEQVRGPADLQHLSQSQLRDLAQEIRQFLIHKVAATGGHLGPNLGVVELTLALHRVFDSPHDPI 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_LISMO (1-deoxy-D-xylulose-5-phosphate synthase OS=Listeria monocytogenes GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  309 INYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            I  P  MK L  ++LE LAA++RA ++ S SK+GGH+  NLGVVELT+ALH  FN+P DK
Sbjct:   11 IKDPSFMKRLDIQELEALAADIRAFLITSTSKSGGHIGPNLGVVELTIALHYSFNSPKDK 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_LISMF (1-deoxy-D-xylulose-5-phosphate synthase OS=Listeria monocytogenes serotype 4b (strain F2365) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  309 INYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            I  P  MK L  ++LE LAA++RA ++ S SK+GGH+  NLGVVELT+ALH  FN+P DK
Sbjct:   11 IKDPSFMKQLDIQELEALAADIRAFLITSTSKSGGHIGPNLGVVELTIALHYSFNSPKDK 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_LISMC (1-deoxy-D-xylulose-5-phosphate synthase OS=Listeria monocytogenes serotype 4b (strain Clip81459) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.575e-12
Identity = 34/60 (56.67%), Postives = 44/60 (73.33%), Query Frame = 3
Query:  309 INYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            I  P  MK L  ++LE LAA++RA ++ S SK+GGH+  NLGVVELT+ALH  FN+P DK
Sbjct:   11 IKDPSFMKQLDIQELEALAADIRAFLITSTSKSGGHIGPNLGVVELTIALHYSFNSPKDK 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_RHOSR (1-deoxy-D-xylulose-5-phosphate synthase OS=Rhodococcus sp. (strain RHA1) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.669e-12
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L  I  P  ++ L+  +++QLAAE+R  +V  V+ TGGHL  NLGVVELTLALHR+F++P D I
Sbjct:    3 VLARIQTPDDLRQLNSAEMKQLAAEIREFLVQKVAATGGHLGPNLGVVELTLALHRIFDSPADPI 67          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_HAEI82.737e-1253.031-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_ALISL2.737e-1253.031-deoxy-D-xylulose-5-phosphate synthase OS=Aliivib... [more]
DXS_MYCSS3.575e-1250.771-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCSK3.575e-1250.771-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCSJ3.575e-1250.771-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_MYCS23.575e-1250.771-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_LISMO3.575e-1256.671-deoxy-D-xylulose-5-phosphate synthase OS=Listeri... [more]
DXS_LISMF3.575e-1256.671-deoxy-D-xylulose-5-phosphate synthase OS=Listeri... [more]
DXS_LISMC3.575e-1256.671-deoxy-D-xylulose-5-phosphate synthase OS=Listeri... [more]
DXS_RHOSR4.669e-1252.311-deoxy-D-xylulose-5-phosphate synthase OS=Rhodoco... [more]

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Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
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