CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PROVI (1-deoxy-D-xylulose-5-phosphate synthase OS=Prosthecochloris vibrioformis (strain DSM 265) (strain DSM 265) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.669e-12
Identity = 34/65 (52.31%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LLDTIN P  +K LS   LE LA E R +++N +S  GGH +++LGV EL++ALH V+NT  D+I
Sbjct:    7 LLDTINSPRDLKKLSIRQLETLANECRHELINLISLNGGHFASSLGVTELSVALHHVYNTEKDRI 71          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MYCA9 (1-deoxy-D-xylulose-5-phosphate synthase OS=Mycobacterium abscessus (strain ATCC 19977 / DSM 44196) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.669e-12
Identity = 35/65 (53.85%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +LD I  P  ++ LSK +L+ LA E+R  +++ V+ TGGHL  NLGVVEL+LALHRVF +P D I
Sbjct:    1 MLDDIRGPGDLQGLSKRELDLLADEIREFLIHKVAATGGHLGPNLGVVELSLALHRVFESPYDPI 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_HAES2 (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus somnus (strain 2336) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.669e-12
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  IN P  ++ LSK+ L QL  ELR+ ++ SVS++ GHL++ LG VELT+ALH VF TP D++
Sbjct:    5 PLLSLINSPDDLRLLSKDKLPQLCQELRSYLLESVSQSSGHLASGLGTVELTVALHYVFKTPFDQL 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_HAES1 (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus somnus (strain 129Pt) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.669e-12
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  IN P  ++ LSK+ L QL  ELR+ ++ SVS++ GHL++ LG VELT+ALH VF TP D++
Sbjct:    5 PLLSLINSPDDLRLLSKDKLPQLCQELRSYLLESVSQSSGHLASGLGTVELTVALHYVFKTPFDQL 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_GEOSW (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus sp. (strain WCH70) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 4.669e-12
Identity = 31/61 (50.82%), Postives = 47/61 (77.05%), Query Frame = 3
Query:  309 INYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            I  P  +KN+S + L +L+A++R  ++  +SKTGGH+  NLGVVELT+ALH+VF++P DK+
Sbjct:    6 IKNPRFLKNMSTKQLIELSADIRKFLIEKLSKTGGHIGPNLGVVELTIALHKVFDSPKDKL 66          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_HAEPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Haemophilus parasuis serovar 5 (strain SH0165) GN=dxs PE=3 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 6.097e-12
Identity = 35/66 (53.03%), Postives = 48/66 (72.73%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  IN P  ++ L K+ L+ L  ELRA ++ SVS+T GHL++ LGVVELT+ALH V+ TP D++
Sbjct:    6 PLLSQINSPDDLRLLPKDKLQPLCDELRAYLLESVSQTSGHLASGLGVVELTVALHYVYQTPFDQL 71          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_CHLTE (1-deoxy-D-xylulose-5-phosphate synthase OS=Chlorobium tepidum GN=dxs PE=3 SV=2)

HSP 1 Score: 70.0922 bits (170), Expect = 6.097e-12
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL +I+ P  +K LS  +LE +AAE R  ++  VS+ GGH  ++LGVVELT+ALH V+ +P D+I
Sbjct:    7 PLLSSIHSPADLKKLSLHELELVAAECRKKVIELVSQNGGHFGSSLGVVELTVALHYVYQSPTDRI 72          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_SYNAS (1-deoxy-D-xylulose-5-phosphate synthase OS=Syntrophus aciditrophicus (strain SB) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.964e-12
Identity = 31/65 (47.69%), Postives = 50/65 (76.92%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L  I +P  ++ L   DL  LA+++R+ I+ +VS+TGGHL+++LG VELTLA+H+VF+TP D++
Sbjct:   17 ILSRIQFPEDIRMLDIGDLTLLASDIRSAIIETVSRTGGHLASSLGTVELTLAVHKVFDTPKDRV 81          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_PELLD (1-deoxy-D-xylulose-5-phosphate synthase OS=Pelodictyon luteolum (strain DSM 273) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 7.964e-12
Identity = 32/66 (48.48%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLLD I  P  +K LS + L+QLA E R +++  ++  GGH +++LGV ELT+ALH V+NT +D+I
Sbjct:    6 PLLDRILSPRDLKKLSTKQLQQLADECRKELIELIAMNGGHFASSLGVTELTVALHHVYNTEEDRI 71          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_TREPS (1-deoxy-D-xylulose-5-phosphate synthase OS=Treponema pallidum subsp. pallidum (strain SS14) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.040e-11
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL ++  P  +K+LS E +  LA E+R +I+  VS  GGHL++NLGVVELT+ALHRVF+ P D +
Sbjct:    5 LLRSLTGPHDLKSLSPEQVRALAQEVRQEILRVVSANGGHLASNLGVVELTIALHRVFSCPHDVV 69          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_PROVI4.669e-1252.311-deoxy-D-xylulose-5-phosphate synthase OS=Prosthe... [more]
DXS_MYCA94.669e-1253.851-deoxy-D-xylulose-5-phosphate synthase OS=Mycobac... [more]
DXS_HAES24.669e-1253.031-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_HAES14.669e-1253.031-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_GEOSW4.669e-1250.821-deoxy-D-xylulose-5-phosphate synthase OS=Geobaci... [more]
DXS_HAEPS6.097e-1253.031-deoxy-D-xylulose-5-phosphate synthase OS=Haemoph... [more]
DXS_CHLTE6.097e-1250.001-deoxy-D-xylulose-5-phosphate synthase OS=Chlorob... [more]
DXS_SYNAS7.964e-1247.691-deoxy-D-xylulose-5-phosphate synthase OS=Syntrop... [more]
DXS_PELLD7.964e-1248.481-deoxy-D-xylulose-5-phosphate synthase OS=Pelodic... [more]
DXS_TREPS1.040e-1152.311-deoxy-D-xylulose-5-phosphate synthase OS=Trepone... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
back to top