CX295610

Overview
NameCX295610
Unique NameCX295610
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length493
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_TREPA (1-deoxy-D-xylulose-5-phosphate synthase OS=Treponema pallidum GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.040e-11
Identity = 34/65 (52.31%), Postives = 47/65 (72.31%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL ++  P  +K+LS E +  LA E+R +I+  VS  GGHL++NLGVVELT+ALHRVF+ P D +
Sbjct:    5 LLRSLTGPHDLKSLSPEQVRALAQEVRQEILRVVSANGGHLASNLGVVELTIALHRVFSCPHDVV 69          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_METI4 (1-deoxy-D-xylulose-5-phosphate synthase OS=Methylacidiphilum infernorum (isolate V4) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.040e-11
Identity = 34/63 (53.97%), Postives = 44/63 (69.84%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDD 485
            LLD I+ P  +K L   +L +LA E+R +++  +SK GGHL  NLGVVELTLALH VF+ P D
Sbjct:    4 LLDRIDSPADLKKLQVSELTKLAEEIRQEMITVLSKCGGHLGPNLGVVELTLALHYVFDVPRD 66          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MACCJ (1-deoxy-D-xylulose-5-phosphate synthase OS=Macrococcus caseolyticus (strain JCSC5402) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.040e-11
Identity = 31/61 (50.82%), Postives = 46/61 (75.41%), Query Frame = 3
Query:  309 INYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            I  P  +K+LS E+L+ L+ ++R  ++   + TGGH+ ANLGVVELT+ALH+VFN+P DK+
Sbjct:    6 IKDPSFLKDLSYEELDGLSQDIRTFLIEKCAVTGGHIGANLGVVELTIALHKVFNSPKDKL 66          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_GEOTN (1-deoxy-D-xylulose-5-phosphate synthase OS=Geobacillus thermodenitrificans (strain NG80-2) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.040e-11
Identity = 32/64 (50.00%), Postives = 47/64 (73.44%), Query Frame = 3
Query:  300 LDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            L  I +P  +K +S   L+QL+A++R  ++  +SKTGGH+  NLGVVELT+ALHR F++P DK+
Sbjct:    3 LTKIEHPRVVKTMSIPQLKQLSADIRRFLIEKLSKTGGHIGPNLGVVELTIALHREFDSPKDKL 66          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_CYTH3 (1-deoxy-D-xylulose-5-phosphate synthase OS=Cytophaga hutchinsonii (strain ATCC 33406 / NCIMB 9469) GN=dxs PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.040e-11
Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 3
Query:  288 PTPLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            P  LL TI+ P  ++ L +  L Q++ ELR  IV++VS  GGH +A+LGVVELT+ALH VFNTP D++
Sbjct:    4 PGELLRTIHSPEELRKLDETQLIQVSEELRQFIVDNVSVYGGHFAASLGVVELTVALHYVFNTPVDQL 71          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS1_STRAW (1-deoxy-D-xylulose-5-phosphate synthase 1 OS=Streptomyces avermitilis GN=dxs1 PE=3 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.040e-11
Identity = 33/65 (50.77%), Postives = 49/65 (75.38%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            +L+ I  P  +K LS+ +L +LA E+R  +V++V++TGGHL  NLGVVEL++ALHR F +P D+I
Sbjct:    3 MLENIRGPRDLKALSEAELGELAEEIREFLVHAVARTGGHLGPNLGVVELSVALHRAFESPVDRI 67          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_MANSM (1-deoxy-D-xylulose-5-phosphate synthase OS=Mannheimia succiniciproducens (strain MBEL55E) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.358e-11
Identity = 33/66 (50.00%), Postives = 47/66 (71.21%), Query Frame = 3
Query:  294 PLLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            PLL  IN P  ++ L+K+ L Q+  ELR  ++ SVS+T GHL++ LG VELT+ALH +F TP D++
Sbjct:    5 PLLSLINSPEDLRLLNKDQLPQVCNELREYLLESVSRTSGHLASGLGTVELTVALHYIFKTPFDQL 70          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_BACSU (1-deoxy-D-xylulose-5-phosphate synthase OS=Bacillus subtilis GN=dxs PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.358e-11
Identity = 31/61 (50.82%), Postives = 47/61 (77.05%), Query Frame = 3
Query:  306 TINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDK 488
            +I  P  +KN+S ++LE+L+ E+R  ++ S+S +GGH+  NLGVVELT+ALH+ FN+P DK
Sbjct:    5 SIQDPSFLKNMSIDELEKLSDEIRQFLITSLSASGGHIGPNLGVVELTVALHKEFNSPKDK 65          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_ANADF (1-deoxy-D-xylulose-5-phosphate synthase OS=Anaeromyxobacter sp. (strain Fw109-5) GN=dxs PE=3 SV=1)

HSP 1 Score: 68.9366 bits (167), Expect = 1.358e-11
Identity = 30/65 (46.15%), Postives = 48/65 (73.85%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LLD+I+ P+ +K L  +DL +L  E+R +I+ + +K GGHL ++LG VEL +ALH V+++P DK+
Sbjct:    4 LLDSIDSPLDLKRLPVDDLPRLCEEIREEIIQTCAKNGGHLGSSLGAVELNVALHYVYSSPTDKL 68          
BLAST of CX295610 vs. ExPASy Swiss-Prot
Match: DXS_TREDE (1-deoxy-D-xylulose-5-phosphate synthase OS=Treponema denticola GN=dxs PE=3 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 1.774e-11
Identity = 33/65 (50.77%), Postives = 46/65 (70.77%), Query Frame = 3
Query:  297 LLDTINYPIHMKNLSKEDLEQLAAELRADIVNSVSKTGGHLSANLGVVELTLALHRVFNTPDDKI 491
            LL  I  P  +K LS  +L+ LA E+R +I+  V   GGHL++NLGV+ELTLA+HRVF++P D +
Sbjct:    6 LLSKIKGPEDIKLLSYNELKDLAVEIRKEILTVVGHNGGHLASNLGVIELTLAIHRVFSSPHDAV 70          
The following BLAST results are available for this feature:
BLAST of CX295610 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 303
Match NameE-valueIdentityDescription
DXS_TREPA1.040e-1152.311-deoxy-D-xylulose-5-phosphate synthase OS=Trepone... [more]
DXS_METI41.040e-1153.971-deoxy-D-xylulose-5-phosphate synthase OS=Methyla... [more]
DXS_MACCJ1.040e-1150.821-deoxy-D-xylulose-5-phosphate synthase OS=Macroco... [more]
DXS_GEOTN1.040e-1150.001-deoxy-D-xylulose-5-phosphate synthase OS=Geobaci... [more]
DXS_CYTH31.040e-1152.941-deoxy-D-xylulose-5-phosphate synthase OS=Cytopha... [more]
DXS1_STRAW1.040e-1150.771-deoxy-D-xylulose-5-phosphate synthase 1 OS=Strep... [more]
DXS_MANSM1.358e-1150.001-deoxy-D-xylulose-5-phosphate synthase OS=Mannhei... [more]
DXS_BACSU1.358e-1150.821-deoxy-D-xylulose-5-phosphate synthase OS=Bacillu... [more]
DXS_ANADF1.358e-1146.151-deoxy-D-xylulose-5-phosphate synthase OS=Anaerom... [more]
DXS_TREDE1.774e-1150.771-deoxy-D-xylulose-5-phosphate synthase OS=Trepone... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05074A07SK DroRLeaf1 Citrus clementina cDNA clone C05074A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295610 ID=CX295610; Name=CX295610; organism=Citrus clementina; type=EST; length=493bp
CTTCCCTCTCTGTCTCTTTCACTTCCTCCTTCGTTATTCATCTCGCGCTC
ACTACTGAATATTGGATCGCACCAACTATGGCTCTCTCTTCCGGGATTGC
TATTGGAGCTAAACAATCTATTTCTCCATTTTTCACTGTTTCACAACCAA
GCCTTAGTTACAGAAAACAGAATTTCTGTTTGAGAGCGTCCGCTGAGAAG
AATAGCTCAGATGGCGAGGAAGCGACGAAGATGGTGATGAGGAAACAAAA
AGGCGGCTGGAAAATTGATTTTTCTGAAGAGAAGCCACCAACACCATTGT
TGGACACGATTAATTACCCAATTCATATGAAGAATCTCTCTAAAGAGGAT
CTTGAACAACTGGCAGCAGAGCTTAGAGCAGATATTGTTAACAGTGTATC
GAAGACAGGTGGGCATCTTAGTGCAAACTTAGGAGTGGTGGAGCTAACAC
TTGCTTTGCATCGTGTTTTCAACACACCTGACGATAAAATTAT
back to top