CX295614

Overview
NameCX295614
Unique NameCX295614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10418 contig Ccv1_Contig10418:3..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS23_RAT (40S ribosomal protein S23 OS=Rattus norvegicus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 2.663e-61
Identity = 114/143 (79.72%), Postives = 126/143 (88.11%), Query Frame = 2 
Query:   71 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 496
            MGK RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS23_MOUSE (40S ribosomal protein S23 OS=Mus musculus GN=Rps23 PE=2 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 2.663e-61
Identity = 114/143 (79.72%), Postives = 126/143 (88.11%), Query Frame = 2 
Query:   71 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 496
            MGK RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS23_HUMAN (40S ribosomal protein S23 OS=Homo sapiens GN=RPS23 PE=1 SV=3)

HSP 1 Score: 235.343 bits (599), Expect = 2.663e-61
Identity = 114/143 (79.72%), Postives = 126/143 (88.11%), Query Frame = 2 
Query:   71 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 496
            MGK RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS23_CHILA (40S ribosomal protein S23 OS=Chinchilla lanigera GN=RPS23 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.663e-61
Identity = 114/143 (79.72%), Postives = 126/143 (88.11%), Query Frame = 2 
Query:   71 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 496
            MGK RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS23_BOVIN (40S ribosomal protein S23 OS=Bos taurus GN=RPS23 PE=2 SV=1)

HSP 1 Score: 235.343 bits (599), Expect = 2.663e-61
Identity = 114/143 (79.72%), Postives = 126/143 (88.11%), Query Frame = 2 
Query:   71 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 496
            MGK RG+   RKL+SHRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRSHRRDQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS23_ICTPU (40S ribosomal protein S23 OS=Ictalurus punctatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 234.572 bits (597), Expect = 4.542e-61
Identity = 113/143 (79.02%), Postives = 125/143 (87.41%), Query Frame = 2 
Query:   71 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 496
            MGK RG+   RKL+ HRR Q+W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRDHRREQKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS23_CAEEL (40S ribosomal protein S23 OS=Caenorhabditis elegans GN=rps-23 PE=2 SV=1)

HSP 1 Score: 233.802 bits (595), Expect = 7.747e-61
Identity = 109/143 (76.22%), Postives = 125/143 (87.41%), Query Frame = 2 
Query:   71 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 496
            MGK +G+   RKLK+HR+ QRW DK YKK+H+G  WK  PF G+SHAKGIVLEKIG+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN++EENDEVL++GFGR GHAVGDIPGVRFK+VKV+  SL+ALFK KKE+PRS
Sbjct:    1 MGKPKGLCTARKLKTHRQEQRWNDKRYKKAHIGTRWKSNPFGGASHAKGIVLEKIGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFVEENDEVLVSGFGRSGHAVGDIPGVRFKIVKVANTSLIALFKGKKERPRS 143
[Close]
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS23_PIG (40S ribosomal protein S23 OS=Sus scrofa GN=RPS23 PE=2 SV=3)

HSP 1 Score: 233.417 bits (594), Expect = 1.012e-60
Identity = 113/143 (79.02%), Postives = 125/143 (87.41%), Query Frame = 2 
Query:   71 MGKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 496
            MGK RG+   RKL+SHRR  +W DK YKK+HLG   K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKKI AFVPNDGCLN+IEENDEVL+AGFGRKGHAVGDIPGVRFKVVKV+ VSLLAL+K KKE+PRS
Sbjct:    1 MGKCRGLRTARKLRSHRRDHKWHDKQYKKAHLGTALKANPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKITAFVPNDGCLNFIEENDEVLVAGFGRKGHAVGDIPGVRFKVVKVANVSLLALYKGKKERPRS 143
[Close]
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS23_ASPFU (40S ribosomal protein S23 OS=Aspergillus fumigatus GN=rps23 PE=2 SV=1)

HSP 1 Score: 227.254 bits (578), Expect = 7.251e-59
Identity = 111/142 (78.17%), Postives = 123/142 (86.62%), Query Frame = 2 
Query:   74 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 496
            GK RG+ A RKL +HRR QRWAD  YKK  LG  +K  PF G+SHAKGIVLEK+G+EAKQPNSAIRKC +VQLIKNGKK+ AFVPNDGCLN+I+ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNAARKLSNHRREQRWADLHYKKRLLGTAFKSSPFGGASHAKGIVLEKVGVEAKQPNSAIRKCVKVQLIKNGKKVTAFVPNDGCLNFIDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145
[Close]
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS23_NEUCR (40S ribosomal protein S23 OS=Neurospora crassa GN=rps-23 PE=3 SV=1)

HSP 1 Score: 226.483 bits (576), Expect = 1.237e-58
Identity = 110/142 (77.46%), Postives = 124/142 (87.32%), Query Frame = 2 
Query:   74 GKTRGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGFGRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPRS 496
            GK RG+ A RKL+++RR QRW+D  YKK  LG  +K  PF GSSHAKGIVLEK+G+EAKQPNSAIRKC RVQLIKNGKK+ AFVPNDGCLN+++ENDEVL+AGFGRKG A GDIPGVRFKVVKVSGV LLAL+KEKKEKPRS
Sbjct:    4 GKPRGLNAARKLRNNRREQRWSDLHYKKRALGTAFKSSPFGGSSHAKGIVLEKVGVEAKQPNSAIRKCVRVQLIKNGKKVTAFVPNDGCLNFVDENDEVLLAGFGRKGKAKGDIPGVRFKVVKVSGVGLLALWKEKKEKPRS 145
The following BLAST results are available for this feature:
BLAST of CX295614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS23_RAT2.663e-6179.7240S ribosomal protein S23 OS=Rattus norvegicus GN=... [more]
RS23_MOUSE2.663e-6179.7240S ribosomal protein S23 OS=Mus musculus GN=Rps23... [more]
RS23_HUMAN2.663e-6179.7240S ribosomal protein S23 OS=Homo sapiens GN=RPS23... [more]
RS23_CHILA2.663e-6179.7240S ribosomal protein S23 OS=Chinchilla lanigera G... [more]
RS23_BOVIN2.663e-6179.7240S ribosomal protein S23 OS=Bos taurus GN=RPS23 P... [more]
RS23_ICTPU4.542e-6179.0240S ribosomal protein S23 OS=Ictalurus punctatus G... [more]
RS23_CAEEL7.747e-6176.2240S ribosomal protein S23 OS=Caenorhabditis elegan... [more]
RS23_PIG1.012e-6079.0240S ribosomal protein S23 OS=Sus scrofa GN=RPS23 P... [more]
RS23_ASPFU7.251e-5978.1740S ribosomal protein S23 OS=Aspergillus fumigatus... [more]
RS23_NEUCR1.237e-5877.4640S ribosomal protein S23 OS=Neurospora crassa GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05074A11SK DroRLeaf1 Citrus clementina cDNA clone C05074A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295614 ID=CX295614; Name=CX295614; organism=Citrus clementina; type=EST; length=756bp
GGCGTCCTCTTGCAACTCTCAAGCTCCAAAGTCGTTCGTTACAGTCAAAA
ATCCTCTTCGTACCGCCAACATGGGGAAGACACGTGGAATGGGAGCTGGT
CGCAAGCTGAAGAGCCACCGCAGAAGACAAAGGTGGGCTGATAAGTCATA
CAAGAAATCCCACCTTGGCAATGAATGGAAGAAGCCATTTGCTGGCTCTT
CCCATGCAAAAGGCATTGTTCTTGAGAAAATCGGTATCGAGGCAAAGCAG
CCCAACTCTGCTATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAATGG
AAAGAAGATTGCAGCTTTCGTACCAAACGATGGTTGTTTGAACTACATTG
AAGAAAATGACGAGGTACTTATTGCAGGATTTGGTCGAAAGGGGCATGCT
GTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCAAGGTTTCAGGCGT
GTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAACCAAGATCCTAAA
CTCCTGATTCAAGATACTTCATCATGTTTTCTTTTTTTAGCACTTTATTT
TCATTAATCCCTGTTGATTACTTTTTTCCTTTATCATGTATTGCTGTTGA
GAGAACTTTTTGGTTTTTTTCCCTCTGTTGAGACTATTAGTAAATTAGTA
TCTGTCTCTTCTACTTGAGTGGTTTGTTGACTGCCGTTGTTCTGTTAGAA
AATACCATTACTGTATAGATCTATCTCCTATGAAAGACTATACTAGAAAA
TCATGG
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