CX295614

Overview
NameCX295614
Unique NameCX295614
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length756
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10418 contig Ccv1_Contig10418:3..758. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS12_PYRFU (30S ribosomal protein S12P OS=Pyrococcus furiosus GN=rps12p PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.471e-35
Identity = 79/138 (57.25%), Postives = 99/138 (71.74%), Query Frame = 2
Query:   86 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 493
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK + AF P DG + +I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS12_PYRAB (30S ribosomal protein S12P OS=Pyrococcus abyssi GN=rps12p PE=3 SV=1)

HSP 1 Score: 149.828 bits (377), Expect = 1.471e-35
Identity = 79/138 (57.25%), Postives = 99/138 (71.74%), Query Frame = 2
Query:   86 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 493
            G  AGRKLK  R++ RW+D  YK+  L   E   P  G+  A+GIVLEKI +EAKQPNS +RK  RVQLIKNGK + AF P DG + +I+E+DEV+I G  G KG ++GDIPG+R+KVVKV+ VSL  L K +KEKPR
Sbjct:    9 GEFAGRKLKLKRKKFRWSDIRYKRRVLRLKEKSDPLEGAPQARGIVLEKIAVEAKQPNSGMRKAVRVQLIKNGKVVTAFCPGDGAIKFIDEHDEVIIEGIGGPKGGSMGDIPGIRYKVVKVNRVSLKELVKGRKEKPR 146          
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS12_IGNH4 (30S ribosomal protein S12P OS=Ignicoccus hospitalis (strain KIN4/I / DSM 18386 / JCM 14125) GN=rps12p PE=3 SV=1)

HSP 1 Score: 149.058 bits (375), Expect = 2.509e-35
Identity = 76/137 (55.47%), Postives = 102/137 (74.45%), Query Frame = 2
Query:   86 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 490
            G+ A RKL+  R + RW+ + +K+  L  + K  P  G+  A+GIVLEK+G+EA++PNSA+RKC RVQL+KNGK + AFVP DG LN I E+DEV+I G  G +G ++GDIPGVR+KVV V+GVSL A+ K KK+KP
Sbjct:    9 GLFAARKLERKRLKFRWSQREFKRRMLKLKEKYDPLEGAPMARGIVLEKVGVEARKPNSAVRKCVRVQLVKNGKVVTAFVPGDGGLNVISEHDEVVIVGIGGPRGRSMGDIPGVRYKVVLVNGVSLDAILKGKKQKP 145          
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS12_SULAC (30S ribosomal protein S12P OS=Sulfolobus acidocaldarius GN=rps12p PE=3 SV=3)

HSP 1 Score: 148.673 bits (374), Expect = 3.277e-35
Identity = 75/138 (54.35%), Postives = 105/138 (76.09%), Query Frame = 2
Query:   83 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 490
            +G+ A RKL+  R +  W+ +S+K+  L  + K  P  G+  A+GIVLEK+GIE++QPNSA+RK  RVQL+KNG+ + AFVP DG +N+I+E+DEV+IAG  G  G ++GD+PGVR+KVV V+GVSL AL+K KK+KP
Sbjct:    8 KGLFAARKLRLKRLKFSWSQRSFKRRMLALKEKFDPLEGAPMARGIVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVVMVNGVSLDALYKGKKQKP 145          
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS12_SULTO (30S ribosomal protein S12P OS=Sulfolobus tokodaii GN=rps12p PE=3 SV=1)

HSP 1 Score: 147.902 bits (372), Expect = 5.591e-35
Identity = 74/138 (53.62%), Postives = 104/138 (75.36%), Query Frame = 2
Query:   83 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 490
            +GM A RKL+  R + RW  + +K+  L  + K  P  G+  A+G+VLEK+GIE++QPNSA+RK  RVQL+KNG+ + AFVP DG +N+I+E+DEV+IAG  G  G ++GD+PGVR+KV+ V+GVSL AL+K KK+KP
Sbjct:    8 KGMFAARKLRLKRLKFRWHQRKFKRRMLKLKEKFDPLEGAPMARGVVLEKVGIESRQPNSAVRKAVRVQLVKNGRIVTAFVPGDGGVNFIDEHDEVVIAGIGGTLGRSMGDLPGVRYKVIMVNGVSLDALYKGKKQKP 145          
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS12_ARCFU (30S ribosomal protein S12P OS=Archaeoglobus fulgidus GN=rps12p PE=3 SV=2)

HSP 1 Score: 147.517 bits (371), Expect = 7.301e-35
Identity = 76/137 (55.47%), Postives = 101/137 (73.72%), Query Frame = 2
Query:   83 RGMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEK 487
            RG+ A RKL  +R++ RW+D+ + +  LG   K  P  G+  A+GIVLEKIGIEA+QPNSAIRK  RVQLIKNG++I AF P DG +N+I+E+DEV++    GR G ++GDIPGVR+KVVKV+  SL  L + +KEK
Sbjct:    3 RGLFAARKLMENRKKFRWSDRRFVRRTLGLAAKADPLEGAPMARGIVLEKIGIEARQPNSAIRKAVRVQLIKNGRQITAFCPGDGAINFIDEHDEVIVEKIGGRMGRSMGDIPGVRYKVVKVNNTSLRELVRGRKEK 139          
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS12_HYPBU (30S ribosomal protein S12P OS=Hyperthermus butylicus (strain DSM 5456 / JCM 9403) GN=rps12p PE=3 SV=1)

HSP 1 Score: 147.132 bits (370), Expect = 9.536e-35
Identity = 74/138 (53.62%), Postives = 104/138 (75.36%), Query Frame = 2
Query:   86 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWK-KPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKPR 493
            G+ A RKL+  R + RW+++ +K   LG + K  P  G+  A+GIVLEK+G+EA+QPNSA+RKC RVQLIKNG+ + AFVP DG L  ++E+DEVLI G  G +G ++GDIPGVR++VV V+GVSL A+ + +K+KP+
Sbjct:    9 GLFAARKLRRKRLKFRWSEREFKIRMLGLKKKYDPLEGAPMARGIVLEKVGVEARQPNSAVRKCVRVQLIKNGRIVTAFVPGDGGLLVVDEHDEVLIEGIGGPRGRSMGDIPGVRYRVVTVNGVSLRAILEGRKQKPQ 146          
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS12_METTP (30S ribosomal protein S12P OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=rps12p PE=3 SV=2)

HSP 1 Score: 146.362 bits (368), Expect = 1.627e-34
Identity = 72/137 (52.55%), Postives = 99/137 (72.26%), Query Frame = 2
Query:   86 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 490
            G+ A RK++   ++ RW+D  Y +  LG + K  P  G+  A+GIVLEK+G+EAKQPNSAIRKC R+QLIKNG+++ AF P DG + +I+E+DEV++    GR G ++GDIPGVRFKVV V+ VSL  +   +KEKP
Sbjct:    4 GINAARKMEDDWKKLRWSDPHYCRRALGLKVKADPLGGAPRARGIVLEKVGVEAKQPNSAIRKCVRIQLIKNGRQVTAFCPGDGAIGFIDEHDEVVVERIGGRMGRSMGDIPGVRFKVVAVNNVSLEEMVSGRKEKP 140          
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS12_UNCMA (30S ribosomal protein S12P OS=Uncultured methanogenic archaeon RC-I GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.775e-34
Identity = 76/137 (55.47%), Postives = 97/137 (70.80%), Query Frame = 2
Query:   86 GMGAGRKLKSHRRRQRWADKSYKKSHLG-NEWKKPFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 490
            G  A RKL   R+  RW+D+ Y +  L  +E   P  G+  AKGIVLEK+G+EAKQPNSAIRKC R+QLIKNG++I AF P DG +N+I+E+DEV I G  GR G + GDIPGVRF+V KV+ VSL  +   K++KP
Sbjct:    4 GKFACRKLVHDRKLYRWSDRDYARRVLRLDEKADPLEGAPQAKGIVLEKVGVEAKQPNSAIRKCIRIQLIKNGRQITAFCPGDGAINFIDEHDEVTIEGIGGRMGGSYGDIPGVRFRVFKVNDVSLEEMVAGKRDKP 140          
BLAST of CX295614 vs. ExPASy Swiss-Prot
Match: RS12_METS3 (30S ribosomal protein S12P OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=rps12p PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 2.775e-34
Identity = 74/137 (54.01%), Postives = 98/137 (71.53%), Query Frame = 2
Query:   86 GMGAGRKLKSHRRRQRWADKSYKKSHLGNEWKK-PFAGSSHAKGIVLEKIGIEAKQPNSAIRKCARVQLIKNGKKIAAFVPNDGCLNYIEENDEVLIAGF-GRKGHAVGDIPGVRFKVVKVSGVSLLALFKEKKEKP 490
            G+ A +KLK +R+  +W D  YK+  L  + K  P  G+  A+GIV+EK+GIEAKQPNSAIRKC RVQLIKNGK++ AF P DG + +I+E+DEV+I G  G  G ++GDIPGVR+KV KV+ V+L  +   K EKP
Sbjct:    3 GLFAAKKLKKNRQNFKWKDVDYKRKALRLDVKADPLEGAPQARGIVIEKVGIEAKQPNSAIRKCVRVQLIKNGKQLTAFAPGDGAIGFIDEHDEVMIEGIGGPSGRSMGDIPGVRWKVSKVNNVALSEMVSGKIEKP 139          
The following BLAST results are available for this feature:
BLAST of CX295614 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 78
Match NameE-valueIdentityDescription
RS12_PYRFU1.471e-3557.2530S ribosomal protein S12P OS=Pyrococcus furiosus ... [more]
RS12_PYRAB1.471e-3557.2530S ribosomal protein S12P OS=Pyrococcus abyssi GN... [more]
RS12_IGNH42.509e-3555.4730S ribosomal protein S12P OS=Ignicoccus hospitali... [more]
RS12_SULAC3.277e-3554.3530S ribosomal protein S12P OS=Sulfolobus acidocald... [more]
RS12_SULTO5.591e-3553.6230S ribosomal protein S12P OS=Sulfolobus tokodaii ... [more]
RS12_ARCFU7.301e-3555.4730S ribosomal protein S12P OS=Archaeoglobus fulgid... [more]
RS12_HYPBU9.536e-3553.6230S ribosomal protein S12P OS=Hyperthermus butylic... [more]
RS12_METTP1.627e-3452.5530S ribosomal protein S12P OS=Methanosaeta thermop... [more]
RS12_UNCMA2.775e-3455.4730S ribosomal protein S12P OS=Uncultured methanoge... [more]
RS12_METS32.775e-3454.0130S ribosomal protein S12P OS=Methanobrevibacter s... [more]

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Properties
Property NameValue
Genbank descriptionC05074A11SK DroRLeaf1 Citrus clementina cDNA clone C05074A11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295614 ID=CX295614; Name=CX295614; organism=Citrus clementina; type=EST; length=756bp
GGCGTCCTCTTGCAACTCTCAAGCTCCAAAGTCGTTCGTTACAGTCAAAA
ATCCTCTTCGTACCGCCAACATGGGGAAGACACGTGGAATGGGAGCTGGT
CGCAAGCTGAAGAGCCACCGCAGAAGACAAAGGTGGGCTGATAAGTCATA
CAAGAAATCCCACCTTGGCAATGAATGGAAGAAGCCATTTGCTGGCTCTT
CCCATGCAAAAGGCATTGTTCTTGAGAAAATCGGTATCGAGGCAAAGCAG
CCCAACTCTGCTATCAGAAAATGTGCTCGAGTTCAGCTGATCAAGAATGG
AAAGAAGATTGCAGCTTTCGTACCAAACGATGGTTGTTTGAACTACATTG
AAGAAAATGACGAGGTACTTATTGCAGGATTTGGTCGAAAGGGGCATGCT
GTGGGAGATATTCCTGGTGTTAGATTTAAGGTTGTCAAGGTTTCAGGCGT
GTCTCTTCTGGCCCTCTTCAAGGAGAAGAAGGAGAAACCAAGATCCTAAA
CTCCTGATTCAAGATACTTCATCATGTTTTCTTTTTTTAGCACTTTATTT
TCATTAATCCCTGTTGATTACTTTTTTCCTTTATCATGTATTGCTGTTGA
GAGAACTTTTTGGTTTTTTTCCCTCTGTTGAGACTATTAGTAAATTAGTA
TCTGTCTCTTCTACTTGAGTGGTTTGTTGACTGCCGTTGTTCTGTTAGAA
AATACCATTACTGTATAGATCTATCTCCTATGAAAGACTATACTAGAAAA
TCATGG
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