CX295615

Overview
NameCX295615
Unique NameCX295615
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length673
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig12207 contig Ccv1_Contig12207:84..756. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_CHICK (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Gallus gallus GN=UQCRFS1 PE=1 SV=1)

HSP 1 Score: 135.961 bits (341), Expect = 1.789e-31
Identity = 72/178 (40.45%), Postives = 102/178 (57.30%), Query Frame = 1
Query:  166 SAEALSLGRDL--GLISDLPATVAAVKNPTSKIVYDEHNHERYPPGDAS-------KRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            S    S  RDL  G+  + PA+V  V N  +   +  +  E       S       ++ F+Y +        A   + ++ +F+ S+SAS DVLAL+ +E+ LS I  G  V  KWRGKP+F+R RT+ +I     VDV+ LRDPQ D  RVK PEW+++VGVCTHLGC+P+ N+GDF
Sbjct:   52 SMSGRSARRDLVAGISLNAPASVRYVHNDVTVPDFSAYRREDVMDATTSSQTSSEDRKGFSYLVTATACVATAYAAKNVVTQFISSLSASADVLALSKIEIKLSDIPEGKNVAFKWRGKPLFVRHRTQAEINQEAEVDVSKLRDPQHDLDRVKKPEWVILVGVCTHLGCVPIANSGDF 229          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_PONPY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pongo pygmaeus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 134.035 bits (336), Expect = 6.797e-31
Identity = 60/123 (48.78%), Postives = 88/123 (71.54%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +        A   + ++ +FV SMSAS DVLALA +E+ LS I  G  +T KWRGKP+F+R RT+++I+   +V+++ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNVVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMTFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_HYLSY (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Hylobates syndactylus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.583e-30
Identity = 59/123 (47.97%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +        A   +  + +FV SMSAS DVLALA +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKGFSYLVTAVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKRPEWVILIGVCTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_COLPO (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Colobus polykomos GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.583e-30
Identity = 59/123 (47.97%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            ++++F+Y +        A   +  + +FV SMSAS DVLA+A +EV LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKSFSYMVTAVTTVGVAYAAKNAVTQFVSSMSASADVLAMAKIEVKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_CERAE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Cercopithecus aethiops GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 132.109 bits (331), Expect = 2.583e-30
Identity = 57/123 (46.34%), Postives = 88/123 (71.54%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +        A   + ++ +F+ SMSAS DVLA+A +E++LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKGFSYLVTAVTTVGVAYAAKNVVTQFISSMSASADVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEEEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_LAGLA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Lagothrix lagotricha GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.373e-30
Identity = 56/123 (45.53%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +            + ++ +FV SMSAS DVLA++ +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKGFSYLVTAATAVGVTYAAKSIVTQFVSSMSASADVLAMSKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWMILIGVCTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_THEGE (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Theropithecus gelada GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 56/123 (45.53%), Postives = 87/123 (70.73%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +        A   +  + +F+ SMSAS DVLA+A +E++LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRDPQ D  RVK PEW++++G+CTHLGC+P+ NAGDF
Sbjct:  109 ARKGFSYLVTAVTTVGVAYAAKNAVTQFISSMSASADVLAMAKIEINLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGICTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_PANTR (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan troglodytes GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 59/123 (47.97%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +        A   +  + +FV SMSAS DVLALA +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_PANPA (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Pan paniscus GN=UQCRFS1 PE=3 SV=1)

HSP 1 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 59/123 (47.97%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +        A   +  + +FV SMSAS DVLALA +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDF 231          
BLAST of CX295615 vs. ExPASy Swiss-Prot
Match: UCRI_HUMAN (Cytochrome b-c1 complex subunit Rieske, mitochondrial OS=Homo sapiens GN=UQCRFS1 PE=1 SV=2)

HSP 1 Score: 131.339 bits (329), Expect = 4.406e-30
Identity = 59/123 (47.97%), Postives = 86/123 (69.92%), Query Frame = 1
Query:  304 SKRAFAYFILTGGRFVYASLIRLLILKFVLSMSASKDVLALASLEVDLSSIEPGTTVTVKWRGKPVFIRRRTEEDIQLANSVDVASLRDPQEDSVRVKNPEWLVVVGVCTHLGCIPLPNAGDF 672
            +++ F+Y +        A   +  + +FV SMSAS DVLALA +E+ LS I  G  +  KWRGKP+F+R RT+++I+   +V+++ LRDPQ D  RVK PEW++++GVCTHLGC+P+ NAGDF
Sbjct:  109 ARKGFSYLVTGVTTVGVAYAAKNAVTQFVSSMSASADVLALAKIEIKLSDIPEGKNMAFKWRGKPLFVRHRTQKEIEQEAAVELSQLRDPQHDLDRVKKPEWVILIGVCTHLGCVPIANAGDF 231          
The following BLAST results are available for this feature:
BLAST of CX295615 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 39
Match NameE-valueIdentityDescription
UCRI_CHICK1.789e-3140.45Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PONPY6.797e-3148.78Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_HYLSY2.583e-3047.97Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_COLPO2.583e-3047.97Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_CERAE2.583e-3046.34Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_LAGLA3.373e-3045.53Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_THEGE4.406e-3045.53Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANTR4.406e-3047.97Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_PANPA4.406e-3047.97Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]
UCRI_HUMAN4.406e-3047.97Cytochrome b-c1 complex subunit Rieske, mitochondr... [more]

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Properties
Property NameValue
Genbank descriptionC05074A12SK DroRLeaf1 Citrus clementina cDNA clone C05074A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295615 ID=CX295615; Name=CX295615; organism=Citrus clementina; type=EST; length=673bp
TTACGCTGGAACTTGCAGCAGACAACCTCCGCCTTCCTATCTGGGAACTA
TCTTAATGACGGCGGCTGCGACGCTGCCGCTGCCGCTCAATCTCTCTCCA
GATCCGTCAATTCCCCGCTTCCTTTCTCTTTCACTTCCCACATTCCGCAT
CTCATCAGAGGTTTGTCTGCTGAAGCCCTCAGTCTAGGACGTGATTTGGG
TCTGATCTCAGACCTTCCAGCTACTGTGGCAGCTGTGAAGAACCCAACTT
CAAAAATTGTCTATGATGAGCACAATCATGAGCGTTATCCACCTGGTGAC
GCCAGCAAGCGTGCATTTGCTTATTTTATCTTGACAGGTGGCAGGTTTGT
GTATGCCTCCTTAATTCGTCTTTTGATCCTCAAGTTTGTTCTTAGCATGT
CTGCGAGCAAAGATGTCCTTGCCCTTGCCTCCCTTGAGGTTGACCTATCC
AGCATTGAACCCGGGACTACTGTTACAGTCAAGTGGCGTGGGAAGCCAGT
TTTCATCAGGCGTCGGACTGAAGAGGATATTCAGTTGGCTAACAGTGTTG
ATGTAGCGTCACTCCGGGACCCACAGGAAGATTCTGTCAGGGTTAAGAAT
CCAGAATGGCTTGTCGTTGTTGGTGTGTGCACACATTTGGGGTGCATTCC
TTTACCAAATGCTGGTGACTTTG
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