CX295625

Overview
NameCX295625
Unique NameCX295625
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length691
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295625 vs. ExPASy Swiss-Prot
Match: PSBO_CHLRE (Oxygen-evolving enhancer protein 1, chloroplastic OS=Chlamydomonas reinhardtii GN=PSBO PE=2 SV=1)

HSP 1 Score: 151.754 bits (382), Expect = 3.292e-36
Identity = 76/141 (53.90%), Postives = 94/141 (66.67%), Query Frame = 3
Query:  243 ATSALVVSGASAEGVPKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDSFA-FKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLF 662
            A +A  ++ A   G    LT+DEIQ  TY++VKG+G AN CP ++ G  +    K G Y+ + FC+EPTSFTVK ES  K    +F  TKLMTRLTYTLD + G F+V  DG+ +  E DGIDYAA TVQLPGGERV FLF
Sbjct:   34 AAAAAALATAMVAGSANALTFDEIQGLTYLQVKGSGIANTCPVLESGTTNLKELKAGSYKLENFCIEPTSFTVKEESQFKGGETEFVKTKLMTRLTYTLDAMSGSFKVGSDGSAELKEDDGIDYAATTVQLPGGERVAFLF 174          
BLAST of CX295625 vs. ExPASy Swiss-Prot
Match: PSBO_EUGGR (Oxygen-evolving enhancer protein 1, chloroplastic OS=Euglena gracilis GN=PSBO PE=1 SV=2)

HSP 1 Score: 141.354 bits (355), Expect = 4.449e-33
Identity = 76/152 (50.00%), Postives = 92/152 (60.53%), Query Frame = 3
Query:  225 IAGFALATSALVVSGASAEGV-PKRLTYDEIQSKTYMEVKGTGTANQCPTIDGGVDS-FAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFPSNN 674
            +AG   A  A ++  A A       LTYDE+QS +Y+EVK +G A  CP +  GV S  + K GKY+   +CLEP+SF VK     K    +F+ TKLMTRLTYTLD I     V  DG+    EKDG+DYAA TVQL GGERVPFLF   N
Sbjct:   71 LAGAGRAMGAALIGAAVAGSANAASLTYDELQSLSYLEVKSSGIAGTCPVLADGVSSKLSLKAGKYEINNWCLEPSSFQVKLPPTEKQQVTEFERTKLMTRLTYTLDAISADLNVGGDGSWTIQEKDGLDYAATTVQLAGGERVPFLFTIKN 222          
BLAST of CX295625 vs. ExPASy Swiss-Prot
Match: PSBO_ANASP (Photosystem II manganese-stabilizing polypeptide OS=Anabaena sp. (strain PCC 7120) GN=psbO PE=3 SV=2)

HSP 1 Score: 115.161 bits (287), Expect = 3.414e-25
Identity = 58/121 (47.93%), Postives = 78/121 (64.46%), Query Frame = 3
Query:  324 TYMEVKGTGTANQCP----TIDGGVDSFAFKPGKYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFPSNN 674
            TY +++GTG AN+CP    T  G +   + K   Y  K+ CLEPT+F VK E  NK    +F   KL+TR T T+D++ G  + + D ++ FVEKDG+D+ A+TVQLPGGERVPFLF   N
Sbjct:   34 TYEQIRGTGLANKCPQLTETSRGSIPLDSSK--SYVLKELCLEPTNFFVKEEPANKRQTAEFVAGKLLTRYTSTIDQVSGDLKFNDDSSLTFVEKDGLDFQAITVQLPGGERVPFLFTIKN 152          
BLAST of CX295625 vs. ExPASy Swiss-Prot
Match: PSBO_THEEB (Photosystem II manganese-stabilizing polypeptide OS=Thermosynechococcus elongatus (strain BP-1) GN=psbO PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.213e-24
Identity = 56/122 (45.90%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  315 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFPSNN 674
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+ GGER+P LF   N
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKN 150          
BLAST of CX295625 vs. ExPASy Swiss-Prot
Match: PSBO_SYNEN (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus naegeli GN=psbO PE=1 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.213e-24
Identity = 56/122 (45.90%), Postives = 81/122 (66.39%), Query Frame = 3
Query:  315 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFPSNN 674
            Q+ TY ++ GTG AN+CPT+D     ++     + Y+  + CL+PT+F VK E  NK    +F  TKL+TR T +LD+I+G  +V+ DG++ FVE+DGID+  VTVQ+ GGER+P LF   N
Sbjct:   29 QTLTYDDIVGTGLANKCPTLDDTARGAYPIDSSQTYRIARLCLQPTTFLVKEEPKNKRQEAEFVPTKLVTRETTSLDQIQGELKVNSDGSLTFVEEDGIDFQPVTVQMAGGERIPLLFTVKN 150          
BLAST of CX295625 vs. ExPASy Swiss-Prot
Match: PSBO_CYAA5 (Photosystem II manganese-stabilizing polypeptide OS=Cyanothece sp. (strain ATCC 51142) GN=psbO PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.991e-21
Identity = 55/122 (45.08%), Postives = 70/122 (57.38%), Query Frame = 3
Query:  315 QSKTYMEVKGTGTANQCPTIDGGV-DSFAFKPGK-YQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFPSNN 674
            Q  TY E+  TG AN+CP I      S   +PG+ Y     CLEP  + VK E VNK    ++   KL+TR T +L++I G   V  DG + F E+ GID+  VTVQLPGGE+VPF F   N
Sbjct:   32 QDLTYDEILNTGLANKCPQISEFTRGSIPIEPGQTYFVDDLCLEPQEYFVKEEPVNKRQEAEYVPGKLLTRYTTSLEQISGKITVDEDGVVTFYEEGGIDFQPVTVQLPGGEQVPFFFTIKN 153          
BLAST of CX295625 vs. ExPASy Swiss-Prot
Match: PSBO_SYNY3 (Photosystem II manganese-stabilizing polypeptide OS=Synechocystis sp. (strain PCC 6803) GN=psbO PE=3 SV=1)

HSP 1 Score: 100.523 bits (249), Expect = 8.703e-21
Identity = 52/120 (43.33%), Postives = 69/120 (57.50%), Query Frame = 3
Query:  324 TYMEVKGTGTANQCPTIDGGV-DSFAFKPG-KYQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLFPSNNW 677
            TY ++  TG AN CP I      +   +P  KY    FC+EP  + VK E VNK    ++   K++TR T +L++I G   V  DGT+ F EKDGID+  +TV LPGGE VPF F   N+
Sbjct:   35 TYDDIVNTGLANVCPEISSFTRGTIEVEPNTKYFVSDFCMEPQEYFVKEEPVNKRQKAEYVKGKVLTRQTTSLEQIRGSIAVGADGTLTFKEKDGIDFQPITVLLPGGEEVPFFFTVKNF 154          
BLAST of CX295625 vs. ExPASy Swiss-Prot
Match: PSBO_SYNE7 (Photosystem II manganese-stabilizing polypeptide OS=Synechococcus elongatus (strain PCC 7942) GN=psbO PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.532e-20
Identity = 52/123 (42.28%), Postives = 73/123 (59.35%), Query Frame = 3
Query:  300 TYDEIQSKTYMEVKGTGTANQCPTI-DGGVDSFAFKPGK-YQAKKFCLEPTSFTVKAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLF 662
            T  ++ + TY ++K TG AN+C ++ +    +   + GK Y     CLEP  F VK E  NK    +F   K++TR T +LD++ G   +  DGT+ F EK GID+ A+TV LPGGE VPFLF
Sbjct:   26 TAADLGTLTYDQIKDTGLANKCLSLKESARGTIPLEAGKKYALTDLCLEPQEFFVKEEPGNKRQKAEFVPGKVLTRYTSSLDQVYGDLALKADGTVSFTEKGGIDFQAITVLLPGGEEVPFLF 148          
BLAST of CX295625 vs. ExPASy Swiss-Prot
Match: PSBO_POPEU (Oxygen-evolving enhancer protein 1, chloroplastic (Fragments) OS=Populus euphratica GN=PSBO PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.329e-12
Identity = 39/68 (57.35%), Postives = 41/68 (60.29%), Query Frame = 3
Query:  459 KAESVNKNAPPDFQNTKLMTRLTYTLDEIEGPFEVSPDGTIKFVEKDGIDYAAVTVQLPGGERVPFLF 662
            KAE +NKN+PPDFQ TKLMTR                         DGIDYAAVTVQLPGGERVPFLF
Sbjct:   10 KAEGINKNSPPDFQKTKLMTR-------------------------DGIDYAAVTVQLPGGERVPFLF 52          
The following BLAST results are available for this feature:
BLAST of CX295625 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 19
Match NameE-valueIdentityDescription
PSBO_CHLRE3.292e-3653.90Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_EUGGR4.449e-3350.00Oxygen-evolving enhancer protein 1, chloroplastic ... [more]
PSBO_ANASP3.414e-2547.93Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_THEEB2.213e-2445.90Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNEN2.213e-2445.90Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_CYAA52.991e-2145.08Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNY38.703e-2143.33Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_SYNE72.532e-2042.28Photosystem II manganese-stabilizing polypeptide O... [more]
PSBO_POPEU4.329e-1257.35Oxygen-evolving enhancer protein 1, chloroplastic ... [more]

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Properties
Property NameValue
Genbank descriptionC05074B10SK DroRLeaf1 Citrus clementina cDNA clone C05074B10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295625 ID=CX295625; Name=CX295625; organism=Citrus clementina; type=EST; length=691bp
CACGAGTGGTAGGGAGCAAGATGGCAGCCTCGTTACAAGCCGCAGCTACA
CTGATGCAACCCACCAAGGTGGGTGTGGTACCCGCTCGCAGCAGCAGCCT
GCAGCTGAGGTCTTCACAGAGCGTTTCGAAGGCTTTTGGTGTCGACTCAG
CTGGTGCTAGGATCTCTTGCACTTTGAATAATGACTTGAAGGATTTGGCT
CAGAAATGTGTTGATGCTACCAAGATCGCTGGCTTTGCCCTCGCCACTTC
TGCTCTCGTCGTTTCGGGAGCAAGTGCTGAAGGTGTTCCAAAGAGGCTAA
CCTATGATGAAATCCAGAGCAAGACATACATGGAAGTAAAGGGAACCGGA
ACTGCTAACCAGTGCCCAACCATTGATGGCGGAGTTGACTCTTTTGCCTT
CAAACCTGGCAAATACCAGGCTAAGAAGTTCTGCCTAGAACCAACTTCCT
TCACTGTCAAGGCTGAGAGTGTCAACAAGAATGCCCCACCAGATTTCCAG
AACACCAAGCTCATGACCCGCCTTACCTACACCCTTGACGAGATTGAGGG
ACCTTTTGAAGTGTCCCCCGATGGCACCATTAAGTTTGTGGAGAAGGATG
GAATTGACTATGCTGCTGTGACAGTTCAGCTGCCTGGAGGCGAGCGTGTG
CCCTTCCTTTTCCCATCAAACAATTGGTAGCATCAGGCAGC
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