CX295629

Overview
NameCX295629
Unique NameCX295629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length752
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NFYB_MAIZE (Nuclear transcription factor Y subunit B OS=Zea mays GN=NFY2 PE=2 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 4.572e-13
Identity = 36/104 (34.62%), Postives = 69/104 (66.35%), Query Frame = 3
Query:  255 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKGGKWSNG 566
            ++D  LP A +++I+K+ +PA+ ++A+DA++ + EC  EFI+ ++SE+++ C RE ++TI  + +L A+  LGF +YIE +    ++++    DS    K S+G
Sbjct:   31 EQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKSSDG 134          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NFYB3_ORYSJ (Nuclear transcription factor Y subunit B-3 OS=Oryza sativa subsp. japonica GN=NFYB3 PE=1 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 36/107 (33.64%), Postives = 69/107 (64.49%), Query Frame = 3
Query:  246 GKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKGGKWSNG 566
            G  ++D  LP A +++I+K+ +PA+ ++A+DA++ + EC  EFI+ ++SE+++ C RE ++TI  + +L A+  LGF +YIE +    ++++    DS    K  +G
Sbjct:   35 GVREQDRFLPIANISRIMKKAIPANGKIAKDAKETVQECVSEFISFITSEASDKCQREKRKTINGDDLLWAMATLGFEDYIEPLKVYLQKYREMEGDSKLTAKAGDG 141          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NFYB2_ORYSJ (Nuclear transcription factor Y subunit B-2 OS=Oryza sativa subsp. japonica GN=NFYB2 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 5.971e-13
Identity = 37/107 (34.58%), Postives = 68/107 (63.55%), Query Frame = 3
Query:  246 GKSKEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKGGKWSNG 566
            G  ++D  LP A +++I+K+ +PA+ ++A+DA++ L EC  EFI+ V+SE+++ C +E ++TI  E +L A+  LGF EY++ +     +++    DS    K  +G
Sbjct:   31 GVREQDRFLPIANISRIMKKAVPANGKIAKDAKETLQECVSEFISFVTSEASDKCQKEKRKTINGEDLLFAMGTLGFEEYVDPLKIYLHKYREVIGDSKLSSKAGDG 137          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NFYBA_ARATH (Nuclear transcription factor Y subunit B-10 OS=Arabidopsis thaliana GN=NFYB10 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 1.330e-12
Identity = 40/105 (38.10%), Postives = 70/105 (66.67%), Query Frame = 3
Query:  255 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE--EVY-AAYEQHKLETMDSLKGGKWS 560
            ++D  LP A +++I+K  LP + ++A+DA++ + EC  EFI+ V+SE+++ C RE ++TI  + +L A+  LGF +YI+  +VY   Y + + +T  S KGG+ S
Sbjct:   29 EQDRFLPIANISRIMKRGLPLNGKIAKDAKETMQECVSEFISFVTSEASDKCQREKRKTINGDDLLWAMATLGFEDYIDPLKVYLMRYREMEGDTKGSGKGGESS 133          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NFYB_PETMA (Nuclear transcription factor Y subunit beta OS=Petromyzon marinus GN=NFYB PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.737e-12
Identity = 36/103 (34.95%), Postives = 66/103 (64.08%), Query Frame = 3
Query:  255 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKGGKWSN 563
            ++D  LP A + +I+K  +P+  ++A+DA++ + EC  EFI+ ++SE++E C +E ++TI  E +L A+  LGF  Y+E +    +Q+  +  +S+KG K  N
Sbjct:   55 EQDIYLPIANVARIMKTSIPSSGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL----KQYLQKYRESMKGEKGIN 153          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NFYB1_ARATH (Nuclear transcription factor Y subunit B-1 OS=Arabidopsis thaliana GN=NFYB1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 5.055e-12
Identity = 36/106 (33.96%), Postives = 69/106 (65.09%), Query Frame = 3
Query:  255 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIE--EVY-AAYEQHKLETMDSLKGGKWSN 563
            ++D  LP A +++I+K+ LP + ++ +DA+D + EC  EFI+ ++SE+++ C +E ++T+  + +L A+  LGF +Y+E  ++Y A Y + + +   S K G  SN
Sbjct:   21 EQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLARYRELEGDNKGSGKSGDGSN 126          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NFYB6_ARATH (Nuclear transcription factor Y subunit B-6 OS=Arabidopsis thaliana GN=NFYB6 PE=1 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 6.601e-12
Identity = 34/104 (32.69%), Postives = 63/104 (60.58%), Query Frame = 3
Query:  255 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKGGKWSNG 566
            ++D  +P A + +I++ +LPA  +++ D+++ + EC  E+I+ ++ E+NE C RE ++TI  E VL A+  LGF +YIE +      H+   ++  +G   S G
Sbjct:   58 EQDRFMPIANVIRIMRRILPAHAKISDDSKETIQECVSEYISFITGEANERCQREQRKTITAEDVLWAMSKLGFDDYIEPL--TLYLHRYRELEGERGVSCSAG 159          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NFYB3_ARATH (Nuclear transcription factor Y subunit B-3 OS=Arabidopsis thaliana GN=NFYB3 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 8.622e-12
Identity = 29/89 (32.58%), Postives = 62/89 (69.66%), Query Frame = 3
Query:  255 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHK 521
            ++D  LP A +++I+K+ LPA+ ++++DA++ + EC  EFI+ ++ E+++ C RE ++TI  + +L A+  LGF +Y+E +    ++++
Sbjct:   21 EQDRFLPIANVSRIMKKALPANAKISKDAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEDYVEPLKVYLQKYR 109          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NFYB_RAT (Nuclear transcription factor Y subunit beta OS=Rattus norvegicus GN=Nfyb PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.126e-11
Identity = 36/98 (36.73%), Postives = 60/98 (61.22%), Query Frame = 3
Query:  255 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKG 548
            ++D  LP A + +I+K  +P   ++A+DA++ + EC  EFI+ ++SE++E C +E ++TI  E +L A+  LGF  Y+E +   Y Q   E M   KG
Sbjct:   54 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-KLYLQKFREAMKGEKG 150          
BLAST of CX295629 vs. ExPASy Swiss-Prot
Match: NFYB_MOUSE (Nuclear transcription factor Y subunit beta OS=Mus musculus GN=Nfyb PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.126e-11
Identity = 36/98 (36.73%), Postives = 60/98 (61.22%), Query Frame = 3
Query:  255 KEDASLPKATMTKIIKEMLPADVRVARDAQDLLIECCVEFINLVSSESNEVCSREDKRTIAPEHVLKALEVLGFGEYIEEVYAAYEQHKLETMDSLKG 548
            ++D  LP A + +I+K  +P   ++A+DA++ + EC  EFI+ ++SE++E C +E ++TI  E +L A+  LGF  Y+E +   Y Q   E M   KG
Sbjct:   54 EQDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMSTLGFDSYVEPL-KLYLQKFREAMKGEKG 150          
The following BLAST results are available for this feature:
BLAST of CX295629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
NFYB_MAIZE4.572e-1334.62Nuclear transcription factor Y subunit B OS=Zea ma... [more]
NFYB3_ORYSJ5.971e-1333.64Nuclear transcription factor Y subunit B-3 OS=Oryz... [more]
NFYB2_ORYSJ5.971e-1334.58Nuclear transcription factor Y subunit B-2 OS=Oryz... [more]
NFYBA_ARATH1.330e-1238.10Nuclear transcription factor Y subunit B-10 OS=Ara... [more]
NFYB_PETMA1.737e-1234.95Nuclear transcription factor Y subunit beta OS=Pet... [more]
NFYB1_ARATH5.055e-1233.96Nuclear transcription factor Y subunit B-1 OS=Arab... [more]
NFYB6_ARATH6.601e-1232.69Nuclear transcription factor Y subunit B-6 OS=Arab... [more]
NFYB3_ARATH8.622e-1232.58Nuclear transcription factor Y subunit B-3 OS=Arab... [more]
NFYB_RAT1.126e-1136.73Nuclear transcription factor Y subunit beta OS=Rat... [more]
NFYB_MOUSE1.126e-1136.73Nuclear transcription factor Y subunit beta OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionC05074C02SK DroRLeaf1 Citrus clementina cDNA clone C05074C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295629 ID=CX295629; Name=CX295629; organism=Citrus clementina; type=EST; length=752bp
TTCGGCCGAGGCCCTACTCGCATGCGAGTGAGAGCTCTCTCTCTTATCGT
GAAGAACAACCATCAAAAGCCATGACTTTGTTTGATAAATCCAGTATATA
TCAACGATGTCCCTTCCACTGAATCGTCCCTCGACTCGGATCTTAACTCG
ACTGACTCGTTTTCTGCATCCTTAGTTGATTCTCTCGTTTCTCTGTTCGA
CTCGGTTCGGTGACTCGATTAAAGATGGAGCCGATGGATATTGTTGGAAA
GTCAAAGGAGGACGCATCGCTCCCAAAAGCTACAATGACTAAAATTATAA
AAGAGATGTTGCCAGCAGATGTACGTGTTGCAAGAGATGCTCAAGATCTT
TTGATTGAGTGTTGTGTAGAGTTTATAAATCTTGTTTCCTCTGAGTCCAA
TGAAGTTTGCAGCAGGGAGGATAAAAGAACAATTGCTCCCGAGCATGTAC
TCAAGGCTTTGGAGGTTCTTGGGTTTGGTGAGTACATCGAGGAGGTCTAT
GCTGCATACGAGCAACACAAGCTTGAGACTATGGACTCGTTGAAAGGTGG
CAAATGGAGCAATGGGGCCGAGATGACGGAGGAAGAAGCAGCGGCTGAGC
AGCAGAGAATGTTTGCTGAGGCACGTGCACGAATGAACGGTGGAGCCGCT
GGCCCTCCCAAGCACCGGACATTACCCAAGTTTAGAGAGCTAACTACTAT
AGGACTTTTATTTTCTCCAGCATAGGCAGCATCCTGACTCTTTCTGTCTG
CC
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