CX295630

Overview
NameCX295630
Unique NameCX295630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295630_ssr476 microsatellite CX295630_ssr476:476..487. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11297 contig Ccv1_Contig11297:18..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: EF115_ARATH (Ethylene-responsive transcription factor ERF115 OS=Arabidopsis thaliana GN=ERF115 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.672e-14
Identity = 36/61 (59.02%), Postives = 40/61 (65.57%), Query Frame = 3
Query:  288 VRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            +RK  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T             + +G KAKLNF
Sbjct:   87 LRKRHYRGVRQRPWGKWAAEIRDPQKAARVWLGTFETAEAAALAYDNAALKFKGSKAKLNF 147          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: EF109_ARATH (Ethylene-responsive transcription factor ERF109 OS=Arabidopsis thaliana GN=ERF109 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 3.725e-14
Identity = 42/97 (43.30%), Postives = 58/97 (59.79%), Query Frame = 3
Query:  186 KSHPKQP-LKVKNEKAEDSSNKAARVEGKEK-KTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            K+H ++  +   + +  +SS  A + EG  K + ++ +KN YRG+RQRPWGK+AAEIRDP +  RVWLGTF T               RG +AKLNF
Sbjct:   95 KNHQQEEEITSSSNRRRESSPVAKKAEGGGKIRKRKNKKNGYRGVRQRPWGKFAAEIRDPKRATRVWLGTFETAEDAARAYDRAAIGFRGPRAKLNF 191          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: EF114_ARATH (Ethylene-responsive transcription factor ERF114 OS=Arabidopsis thaliana GN=ERF114 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.865e-14
Identity = 35/61 (57.38%), Postives = 40/61 (65.57%), Query Frame = 3
Query:  288 VRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            +R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T             + +G KAKLNF
Sbjct:   85 LRRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAESAALAYDEAALKFKGSKAKLNF 145          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: EF113_ARATH (Ethylene-responsive transcription factor ERF113 OS=Arabidopsis thaliana GN=ERF113 PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 8.298e-14
Identity = 35/60 (58.33%), Postives = 39/60 (65.00%), Query Frame = 3
Query:  291 RKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            R+  YRG+RQRPWGKWAAEIRDP K  RVWLGTF T             + +G KAKLNF
Sbjct:   35 RRRHYRGVRQRPWGKWAAEIRDPKKAARVWLGTFETAEEAALAYDRAALKFKGTKAKLNF 94          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF4_TOBAC (Ethylene-responsive transcription factor 4 OS=Nicotiana tabacum GN=ERF4 PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 3
Query:  258 VEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            ++G   KT  V++  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T            +  RG KAK NF
Sbjct:   12 LKGGNVKTDGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF4_NICSY (Ethylene-responsive transcription factor 4 OS=Nicotiana sylvestris GN=ERF4 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 35/71 (49.30%), Postives = 45/71 (63.38%), Query Frame = 3
Query:  258 VEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            ++G   KT  V++  YRG+R+RPWG++AAEIRDP K  RVWLGTF+T            +  RG KAK NF
Sbjct:   12 LKGGNVKTNGVKEVHYRGVRKRPWGRYAAEIRDPGKKSRVWLGTFDTAEEAAKAYDTAAREFRGPKAKTNF 82          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: CRF2_ARATH (Ethylene-responsive transcription factor CRF2 OS=Arabidopsis thaliana GN=CRF2 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.565e-12
Identity = 46/123 (37.40%), Postives = 63/123 (51.22%), Query Frame = 3
Query:  102 RRERKLTSEDLWSEFGSISDLLGLDYNGKSHPKQPLKVKNEKAEDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            RR +K  +E ++ + G++  + G     +S  +Q   VK+E        A      EKK        +RG+RQRPWGKWAAEIRDP K VR+WLGT+NT             ++RG  A  NF
Sbjct:   66 RRVKKFVNE-VYLDSGAV--VTGSCGQMESKKRQKRAVKSESTVSPVVSATTTTTGEKK--------FRGVRQRPWGKWAAEIRDPLKRVRLWLGTYNTAEEAAMVYDNAAIQLRGPDALTNF 177          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF77_ARATH (Ethylene-responsive transcription factor 10 OS=Arabidopsis thaliana GN=ERF10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 2.044e-12
Identity = 39/85 (45.88%), Postives = 48/85 (56.47%), Query Frame = 3
Query:  216 KNEKAEDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            K  K   +  KA  V    +K++ VR   YRG+R+RPWG++AAEIRDP K  RVWLG+FNT             R RG KA  NF
Sbjct:   27 KGVKKRKNVTKALAVNDGGEKSKEVR---YRGVRRRPWGRYAAEIRDPVKKKRVWLGSFNTGEEAARAYDSAAIRFRGSKATTNF 108          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: CRF1_ARATH (Ethylene-responsive transcription factor CRF1 OS=Arabidopsis thaliana GN=CRF1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.669e-12
Identity = 40/86 (46.51%), Postives = 50/86 (58.14%), Query Frame = 3
Query:  240 SNKAARVEGKEKK---------TQRVRKNLYRGIRQRPWGKWAAEIRDPYKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            S+K   ++ K KK         T   RK  +RG+RQRPWGKWAAEIRDP + VRVWLGTF+T             ++RG  A+LNF
Sbjct:   59 SDKEKPMKKKRKKRVVTVPVVVTTATRK--FRGVRQRPWGKWAAEIRDPSRRVRVWLGTFDTAEEAAIVYDNAAIQLRGPNAELNF 142          
BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: ERF99_ARATH (Ethylene-responsive transcription factor 13 OS=Arabidopsis thaliana GN=ERF13 PE=2 SV=2)

HSP 1 Score: 72.0182 bits (175), Expect = 3.486e-12
Identity = 38/82 (46.34%), Postives = 49/82 (59.76%), Query Frame = 3
Query:  228 AEDSSNKAARVEGKEKKTQRVRKNLYRGIRQRPWGKWAAEIRDPYK-GVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            AE++   A +  G     Q+  +  YRG+R+RPWGK+AAEIRDP K G RVWLGT+ T             ++RG KAKLNF
Sbjct:   69 AEENKPPATKASGSHAPRQKGMQ--YRGVRRRPWGKFAAEIRDPKKNGARVWLGTYETPEDAAVAYDRAAFQLRGSKAKLNF 148          
The following BLAST results are available for this feature:
BLAST of CX295630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EF115_ARATH1.672e-1459.02Ethylene-responsive transcription factor ERF115 OS... [more]
EF109_ARATH3.725e-1443.30Ethylene-responsive transcription factor ERF109 OS... [more]
EF114_ARATH4.865e-1457.38Ethylene-responsive transcription factor ERF114 OS... [more]
EF113_ARATH8.298e-1458.33Ethylene-responsive transcription factor ERF113 OS... [more]
ERF4_TOBAC1.565e-1249.30Ethylene-responsive transcription factor 4 OS=Nico... [more]
ERF4_NICSY1.565e-1249.30Ethylene-responsive transcription factor 4 OS=Nico... [more]
CRF2_ARATH1.565e-1237.40Ethylene-responsive transcription factor CRF2 OS=A... [more]
ERF77_ARATH2.044e-1245.88Ethylene-responsive transcription factor 10 OS=Ara... [more]
CRF1_ARATH2.669e-1246.51Ethylene-responsive transcription factor CRF1 OS=A... [more]
ERF99_ARATH3.486e-1246.34Ethylene-responsive transcription factor 13 OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC05074C03SK DroRLeaf1 Citrus clementina cDNA clone C05074C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295630 ID=CX295630; Name=CX295630; organism=Citrus clementina; type=EST; length=708bp
GAGGCAAAACTTTCTCATCCCAACACACAAATTAGAAGAGAAGAAAAAAT
AATATGTGTGGCGGTGCACTTATTGCTGATTATGATGAAGTCCGGCCGGT
CAGGCGCGAGCGCAAATTGACCTCCGAGGATCTCTGGTCCGAGTTTGGTT
CCATTTCCGACCTCTTGGGCTTGGACTACAATGGCAAATCCCACCCTAAG
CAACCTCTCAAAGTGAAAAATGAGAAGGCTGAAGATTCAAGCAATAAAGC
TGCTCGTGTTGAGGGGAAGGAGAAGAAGACTCAGCGAGTTCGCAAGAACC
TGTACAGAGGAATACGGCAGAGGCCGTGGGGAAAATGGGCAGCTGAAATT
AGAGACCCTTACAAGGGCGTCCGCGTTTGGCTCGGCACTTTCAACACAGC
CGAAGAAGCCGCAAGAGCTTATGATGAAGCCGCCAAGCGTATCCGCGGCG
ACAAGGCCAAGCTCAACTTCGCTCAGCCGCCGCCGCCAATAGCTCCACCC
CCAGCTAAGAAACGCTGCATGCCATCCCCTGAGTTGACTCAGCCGAGATT
TGAAACCATCGGAACCCCACCGGCTCCGGCGCCGTCCCCGTGGGTGGGGT
TTGGGTATCAGAATGAGTTTTATCAACCCAGGGCAGTAGACGACGAGTTT
GAGCTGAAGCCAGCAATTTCGAGCTTGGAATCGTTTTTGGGATTGGAGCC
ATTATGAG
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