CX295630

Overview
NameCX295630
Unique NameCX295630
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length708
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295630_ssr476 microsatellite CX295630_ssr476:476..487. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11297 contig Ccv1_Contig11297:18..725. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
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BLAST of CX295630 vs. ExPASy Swiss-Prot
Match: EF103_ARATH (Ethylene-responsive transcription factor 6 OS=Arabidopsis thaliana GN=ERF6 PE=2 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 34/60 (56.67%), Postives = 38/60 (63.33%), Query Frame = 3 
Query:  294 KNLYRGIRQRPWGKWAAEIRDP-YKGVRVWLGTFNTXXXXXXXXXXXXKRIRGDKAKLNF 470
            K  YRG+R RPWGK+AAEIRDP  +G RVWLGTF T             R+RG KA LNF
Sbjct:  134 KRHYRGVRMRPWGKFAAEIRDPTRRGTRVWLGTFETAIEAARAYDKEAFRLRGSKAILNF 193
The following BLAST results are available for this feature:
BLAST of CX295630 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 51
Match NameE-valueIdentityDescription
EF103_ARATH8.587e-1156.67Ethylene-responsive transcription factor 6 OS=Arab... [more]

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Properties
Property NameValue
Genbank descriptionC05074C03SK DroRLeaf1 Citrus clementina cDNA clone C05074C03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295630 ID=CX295630; Name=CX295630; organism=Citrus clementina; type=EST; length=708bp
GAGGCAAAACTTTCTCATCCCAACACACAAATTAGAAGAGAAGAAAAAAT
AATATGTGTGGCGGTGCACTTATTGCTGATTATGATGAAGTCCGGCCGGT
CAGGCGCGAGCGCAAATTGACCTCCGAGGATCTCTGGTCCGAGTTTGGTT
CCATTTCCGACCTCTTGGGCTTGGACTACAATGGCAAATCCCACCCTAAG
CAACCTCTCAAAGTGAAAAATGAGAAGGCTGAAGATTCAAGCAATAAAGC
TGCTCGTGTTGAGGGGAAGGAGAAGAAGACTCAGCGAGTTCGCAAGAACC
TGTACAGAGGAATACGGCAGAGGCCGTGGGGAAAATGGGCAGCTGAAATT
AGAGACCCTTACAAGGGCGTCCGCGTTTGGCTCGGCACTTTCAACACAGC
CGAAGAAGCCGCAAGAGCTTATGATGAAGCCGCCAAGCGTATCCGCGGCG
ACAAGGCCAAGCTCAACTTCGCTCAGCCGCCGCCGCCAATAGCTCCACCC
CCAGCTAAGAAACGCTGCATGCCATCCCCTGAGTTGACTCAGCCGAGATT
TGAAACCATCGGAACCCCACCGGCTCCGGCGCCGTCCCCGTGGGTGGGGT
TTGGGTATCAGAATGAGTTTTATCAACCCAGGGCAGTAGACGACGAGTTT
GAGCTGAAGCCAGCAATTTCGAGCTTGGAATCGTTTTTGGGATTGGAGCC
ATTATGAG
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