CX295633

Overview
NameCX295633
Unique NameCX295633
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2455 contig Ccv1_Contig2455:19..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL1_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 3.658e-15
Identity = 57/190 (30.00%), Postives = 87/190 (45.79%), Query Frame = 3
Query:   72 DGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAVXXXXXXXXXXXXXXXXXXIVHFHDLIELSGNISNFPDVSIKQTDTAALLY 641
            D I+RS  P + +P   +L +  + F N +    K  LI+  +GE+ T+SQ++    K + G   LGI + D +M+  PNS ++   FLG           NP ++ +E+ KQ+  S  KLI+T     DKVKD+                        +HF  L+E   + S  P+V I   D  AL Y
Sbjct:   10 DLIFRSKLPDIYIPK--HLPLHTYCFENISKVGDKSCLINGATGETFTYSQVELLSRKVASGLNKLGIQQGDTIMLLLPNSPEYFFAFLGASYRGAISTMANPFFTSAEVIKQLKASQAKLIITQACYVDKVKDY------AAEKNIQIICIDDAPQDCLHFSKLME--ADESEMPEVVINSDDVVALPY 189          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL2_PETCR (4-coumarate--CoA ligase 1 OS=Petroselinum crispum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.064e-14
Identity = 57/190 (30.00%), Postives = 87/190 (45.79%), Query Frame = 3
Query:   72 DGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAVXXXXXXXXXXXXXXXXXXIVHFHDLIELSGNISNFPDVSIKQTDTAALLY 641
            D I+RS  P + +P   +L +  + F N +    K  LI+  +GE+ T+SQ++    K + G   LGI + D +M+  PNS ++   FLG           NP ++ +E+ KQ+  S  KLI+T     DKVKD+                        +HF  L+E   + S  P+V I   D  AL Y
Sbjct:   10 DLIFRSKLPDIYIPK--HLPLHTYCFENISKVGDKSCLINGATGETFTYSQVELLSRKVASGLNKLGIQQGDTIMLLLPNSPEYFFAFLGASYRGAISTMANPFFTSAEVIKQLKASLAKLIITQACYVDKVKDY------AAEKNIQIICIDDAPQDCLHFSKLME--ADESEMPEVVIDSDDVVALPY 189          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL1_TOBAC (4-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=4CL1 PE=2 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 1.815e-14
Identity = 52/190 (27.37%), Postives = 89/190 (46.84%), Query Frame = 3
Query:   72 DGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAVXXXXXXXXXXXXXXXXXXIVHFHDLIELSGNISNFPDVSIKQTDTAALLY 641
            D I+RS  P + +P   +L +  + F N + + S+P LI+  + +  T+++++ T  K + G   LGI + D +MI  PNS +F   F+G           NP+++ +E+ KQ   S+ K+I+T      KVKD+                        +HF +L +   +    P+V I+  D  AL Y
Sbjct:   14 DLIFRSKLPDIYIPK--HLPLHSYCFENISEFSSRPCLINGANDQIYTYAEVELTCRKVAVGLNKLGIQQKDTIMILLPNSPEFVFAFMGASYLGAISTMANPLFTPAEVVKQAKASSAKIIITQSCFVGKVKDY------ASENDVKVICIDSAPEGCLHFSELTQ--SDEHEIPEVKIQPDDVVALPY 193          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CLL4_ARATH (4-coumarate--CoA ligase-like 4 OS=Arabidopsis thaliana GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.044e-14
Identity = 53/140 (37.86%), Postives = 75/140 (53.57%), Query Frame = 3
Query:   54 KSGYGR-DGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRH-LGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKV 467
            +SG+ + +  + S R PL LP  PNLS     F +S  +  K A IDA +G+ LTFS L   V + +    H +GI + DVV+I +PNS   PV  L V          N + +  E+SKQ+ DSNP L+ T  +L  K+
Sbjct:   13 RSGFCKSNSTFYSKRQPLSLP--PNLSRDVTTFISSQPHRGKTAFIDAATGQCLTFSDLWRAVDRVADCLYHEVGIRRGDVVLILSPNSIFIPVVCLSVMSLGAVFTTANTLNTSGEISKQIADSNPTLVFTTRQLAPKL 150          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL2_TOBAC (4-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=4CL2 PE=2 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.537e-13
Identity = 55/198 (27.78%), Postives = 90/198 (45.45%), Query Frame = 3
Query:   48 MEKSGYGRDGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAVXXXXXXXXXXXXXXXXXXIVHFHDLIELSGNISNFPDVSIKQTDTAALLY 641
            MEK     D I+RS  P + +P+  +L +  + F N + + S+P LI+  + +  T++ ++    K + G    GI   D +MI  PNS +F   F+G           NP+++ +E+ KQ   S+ K+IVT     +KVKD+                        +HF  L +   N  + P+V I+  D  AL Y
Sbjct:    1 MEKDTKQVDIIFRSKLPDIYIPN--HLPLHSYCFENISEFSSRPCLINGANKQIYTYADVELNSRKVAAGLHKQGIQPKDTIMILLPNSPEFVFAFIGASYLGAISTMANPLFTPAEVVKQAKASSAKIIVTQACHVNKVKDY------AFENDVKIICIDSAPEGCLHFSVLTQ--ANEHDIPEVEIQPDDVVALPY 188          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CLL2_ORYSJ (4-coumarate--CoA ligase-like 2 OS=Oryza sativa subsp. japonica GN=4CLL2 PE=2 SV=3)

HSP 1 Score: 75.485 bits (184), Expect = 2.621e-13
Identity = 55/190 (28.95%), Postives = 85/190 (44.74%), Query Frame = 3
Query:   75 GIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRH-LGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAVXXXXXXXXXXXXXXXXXXIVHFHDLIELSGNISNFPDVSIKQTDTAALLY 641
            G+Y SL PPL LPS+P+LS+V  LF +   +     L+DA +  +L+ +  +  V   + G R  L I +  +V++  PNS  FPV FL V          NP  + +E++ ++ D+ P L++       K+     P V                     FH L+E          V + Q D AA+LY
Sbjct:   21 GLYSSLHPPLPLPSDPSLSLVPHLFSHLPLHHHS-LLVDAPTAATLSCADFRRLVSSLAAGLRRRLHIARGSLVLLLLPNSLTFPVAFLAVLATGAVATTMNPSSAPAEIAARLRDTAPSLVLASTHNAAKLPPLAAPLVLVPDTFQQQHDDDQFD---FFFHALLETDPETPVEMGVGVGQDDAAAVLY 206          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CLL9_ORYSJ (4-coumarate--CoA ligase-like 9 OS=Oryza sativa subsp. japonica GN=4CLL9 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.424e-13
Identity = 41/142 (28.87%), Postives = 74/142 (52.11%), Query Frame = 3
Query:   69 RDGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSG-ESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAV 491
            ++ ++RS  PP+ +P    +++  F+   + +Y  + AL++A +G  S T+ ++     + +   R +G+ K  VV++  PN   +PV  LG+          NP    +E+ KQV DS  KL+V     +DKVKD  +P +
Sbjct:   16 QEHVFRSRFPPVAVPD--GVTVPEFVLDGAEAYADRVALVEAAAGGRSYTYGEVARDTARFARALRSVGVRKGHVVVVALPNLAVYPVVSLGIMSAGAVFSGVNPRALAAEIKKQVEDSEAKLVVANEVAFDKVKDAGVPVI 155          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CLL3_ARATH (4-coumarate--CoA ligase-like 3 OS=Arabidopsis thaliana GN=4CLL3 PE=2 SV=2)

HSP 1 Score: 75.0998 bits (183), Expect = 3.424e-13
Identity = 49/140 (35.00%), Postives = 72/140 (51.43%), Query Frame = 3
Query:   54 KSGYGR-DGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRH-LGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKV 467
            +SG+ + +  + S R PL LP  P+L +  F+  +S       A IDA +G  LTFS L   V + +    H +GI + DVV+I +PNS   PV  L V          N + +  E+SKQ+  SNP L+ T  +L  K+
Sbjct:   13 RSGFCKSNSTFYSKRNPLCLPPNPSLDVTTFI--SSQPQRGTTAFIDASTGHRLTFSDLWRVVDRVADCLYHEVGIRRGDVVLILSPNSIYIPVVCLSVMSLGAVVTTANTLNTSGEISKQIAQSNPTLVFTTSQLAPKL 150          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL3_ARATH (4-coumarate--CoA ligase 3 OS=Arabidopsis thaliana GN=4CL3 PE=1 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 3.424e-13
Identity = 44/132 (33.33%), Postives = 67/132 (50.76%), Query Frame = 3
Query:   78 IYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKD 473
            I+RS  P + +P+  +L +  + F   +S   KP LI   +G+S T+ +      + + G   LGI K DV+MI   NS +F   F+G           NP Y+  EL KQ+  S  KLI+T  +  DK+K+
Sbjct:   34 IFRSKLPDIDIPN--HLPLHTYCFEKLSSVSDKPCLIVGSTGKSYTYGETHLICRRVASGLYKLGIRKGDVIMILLQNSAEFVFSFMGASMIGAVSTTANPFYTSQELYKQLKSSGAKLIITHSQYVDKLKN 163          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CLL6_ARATH (4-coumarate--CoA ligase-like 6 OS=Arabidopsis thaliana GN=4CLL6 PE=2 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 4.471e-13
Identity = 58/192 (30.21%), Postives = 88/192 (45.83%), Query Frame = 3
Query:   69 RDGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRH-LGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAVXXXXXXXXXXXXXXXXXXIVHFHDLIELSGNISNFPDVSIKQTDTAALLY 641
            + GIY S  P L LP +PNL  V  LF  S  +    ALID+ +G S++ ++L+  V   + G  H LG+ + DVV +  PNS  FP+ FL +          NP  S+ E+ KQV + +  L  T  E  +K+    +  +                     F+ +++ S      P   IKQ D AA++Y
Sbjct:   28 KTGIYTSKFPSLHLPVDPNLDAVSALF--SHKHHGDTALIDSLTGFSISHTELQIMVQSMAAGIYHVLGVRQGDVVSLVLPNSVYFPMIFLSLISLGAIVTTMNPSSSLGEIKKQVSECSVGLAFTSTENVEKLSSLGVSVISVSESYDFDSIRIENP----KFYSIMKES--FGFVPKPLIKQDDVAAIMY 211          
The following BLAST results are available for this feature:
BLAST of CX295633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
4CL1_PETCR3.658e-1530.004-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL2_PETCR1.064e-1430.004-coumarate--CoA ligase 1 OS=Petroselinum crispum ... [more]
4CL1_TOBAC1.815e-1427.374-coumarate--CoA ligase 1 OS=Nicotiana tabacum GN=... [more]
4CLL4_ARATH4.044e-1437.864-coumarate--CoA ligase-like 4 OS=Arabidopsis thal... [more]
4CL2_TOBAC1.537e-1327.784-coumarate--CoA ligase 2 OS=Nicotiana tabacum GN=... [more]
4CLL2_ORYSJ2.621e-1328.954-coumarate--CoA ligase-like 2 OS=Oryza sativa sub... [more]
4CLL9_ORYSJ3.424e-1328.874-coumarate--CoA ligase-like 9 OS=Oryza sativa sub... [more]
4CLL3_ARATH3.424e-1335.004-coumarate--CoA ligase-like 3 OS=Arabidopsis thal... [more]
4CL3_ARATH3.424e-1333.334-coumarate--CoA ligase 3 OS=Arabidopsis thaliana ... [more]
4CLL6_ARATH4.471e-1330.214-coumarate--CoA ligase-like 6 OS=Arabidopsis thal... [more]

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Properties
Property NameValue
Genbank descriptionC05074C06SK DroRLeaf1 Citrus clementina cDNA clone C05074C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295633 ID=CX295633; Name=CX295633; organism=Citrus clementina; type=EST; length=642bp
ATAAAATAAAATTCTCTGACTTCCCTTTTTTATCTTGTTTGGTTTGAATG
GAGAAATCTGGTTATGGCCGTGATGGTATCTACAGATCTCTGAGGCCGCC
TTTGGTTCTTCCCAGTGAGCCCAATCTTTCTATGGTTCATTTTCTTTTTA
GAAACTCTGCCTCTTATCCCTCCAAGCCAGCACTCATTGATGCTGATTCT
GGTGAATCTTTGACCTTTTCGCAACTCAAATCCACTGTGATTAAGGCCTC
TCATGGCTTTCGCCATCTGGGTATTACAAAAAATGATGTTGTTATGATCT
TTGCCCCAAATTCAACTCAGTTTCCTGTTTGCTTTCTTGGTGTTATTGCT
ACAGGCGCCATAGCAACAACTGCTAATCCTGTTTACTCTGTCTCTGAACT
GTCAAAGCAAGTTATAGATTCAAATCCAAAACTCATCGTCACTGTACCTG
AATTGTGGGACAAAGTTAAAGACTTCAACTTGCCAGCCGTCCTTTTGGGT
TCGAAAAGTAAACTTGCTTCATGTGGTCTTAGCTCAAGTTCAAAGATTGT
TCATTTTCATGATTTAATTGAATTATCTGGGAATATATCAAATTTTCCAG
ATGTTTCTATTAAGCAGACAGATACTGCTGCTTTGTTGTACT
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