CX295633

Overview
NameCX295633
Unique NameCX295633
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length642
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig2455 contig Ccv1_Contig2455:19..660. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CLL3_ORYSJ (4-coumarate--CoA ligase-like 3 OS=Oryza sativa subsp. japonica GN=4CLL3 PE=2 SV=1)

HSP 1 Score: 73.559 bits (179), Expect = 9.961e-13
Identity = 41/114 (35.96%), Postives = 63/114 (55.26%), Query Frame = 3
Query:   75 GIYRSLRPPLVLPSEPNLSMVHFLF-RNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHL-GITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQ 410
            GIY S+ PP+ LP++P+L++V  LF R   + P  P L+DA +  +++ + L+  V   + G R   G+ K  VV++  PNS  FPV FL V          NP  S +E++ Q
Sbjct:   33 GIYSSIHPPVALPTDPSLTLVAHLFARLPLADPGAPTLVDAATASAVSRADLRRLVASLAAGLRRRHGVRKGSVVLLLLPNSVAFPVSFLAVLAAGAVATTMNPSSSPAEIAAQ 146          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL3_ORYSJ (Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa subsp. japonica GN=4CL3 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.699e-12
Identity = 39/133 (29.32%), Postives = 71/133 (53.38%), Query Frame = 3
Query:   78 IYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDF 476
            ++RS  P + + +  ++++  + F   A   ++P LID  +GES T+++++S   +A+ G R +G+ K DVVM    N  +F   FLG           NP Y+  E+ +Q   +  ++IVT     +KV++F
Sbjct:   11 VFRSKLPDIEIDN--SMTLQEYCFARMAEVGARPCLIDGQTGESYTYAEVESASRRAAAGLRRMGVGKGDVVMSLLRNCPEFAFSFLGAARLGAATTTANPFYTPHEVHRQAEAAGARVIVTEACAVEKVREF 141          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CLL1_ARATH (4-coumarate--CoA ligase-like 1 OS=Arabidopsis thaliana GN=4CLL1 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.219e-12
Identity = 47/186 (25.27%), Postives = 84/186 (45.16%), Query Frame = 3
Query:   78 IYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAVXXXXXXXXXXXXXXXXXXIVHFHDLIELSGNISNFPDVSIKQTDTAAL 635
            I+RSL P + +P +  L++  F+ +    Y    A ++A +G+++T+  +     + +     LG+ K  V+++  PN  ++ +  LG+          NP   VSE+ KQV  S  + I+T    ++KVK   LP +                   V++ DL+E      +  +  I QTD  AL
Sbjct:   12 IFRSLYPSVPIPDK--LTLPEFVLQGVEEYTENVAFVEAVTGKAVTYGDVVRDTKRLAKALTSLGLRKGQVMVVVLPNVAEYGIIALGIMSAGGVFSGANPTALVSEIKKQVEASGARGIITDATNYEKVKSLGLPVI---------VLGEEKIEGAVNWKDLLEAGDKCGDTDNEEILQTDLCAL 186          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CLL4_ORYSJ (4-coumarate--CoA ligase-like 4 OS=Oryza sativa subsp. japonica GN=4CLL4 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.101e-11
Identity = 46/141 (32.62%), Postives = 71/141 (50.35%), Query Frame = 3
Query:   54 KSGY-GRDGIYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGF--RHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKV 467
            +SGY      +RS R  + LP++P + +V FL   S  +    AL+DA +G  +TF++L   V  A+       + + K  V +I +PNS  FPV  L            NP+ + +E++KQV D+ P L  T  EL  K+
Sbjct:   12 RSGYCAATRTFRSRRADVPLPADPEVDVVSFLA--SRRHSGVVALVDAATGRRITFTELWRAVAGAASALAAHPVSLRKGHVALILSPNSVHFPVAALAAMSLGAVLTTANPLNTPAEIAKQVADARPVLAFTTRELLPKL 150          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL4_ARATH (4-coumarate--CoA ligase 4 OS=Arabidopsis thaliana GN=4CL4 PE=1 SV=1)

HSP 1 Score: 69.3218 bits (168), Expect = 1.879e-11
Identity = 43/143 (30.07%), Postives = 73/143 (51.05%), Query Frame = 3
Query:   51 EKSGYGRDGIYRSLRPPLVLPSEPNLSMVHFLFRNSASY----PSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKV 467
            E+     D I+RS  P + +P+  +L +  ++F+  +       S   +ID  +G  LT++ +++ + + + G   LGI   DVVM+  PNS +F + FL V          NP Y+  E++KQ   S  K+I+T   L DK+
Sbjct:   19 EEEEPSHDFIFRSKLPDIFIPN--HLPLTDYVFQRFSGDGDGDSSTTCIIDGATGRILTYADVQTNMRRIAAGIHRLGIRHGDVVMLLLPNSPEFALSFLAVAYLGAVSTTANPFYTQPEIAKQAKASAAKMIITKKCLVDKL 159          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL2_SOYBN (4-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2)

HSP 1 Score: 67.781 bits (164), Expect = 5.466e-11
Identity = 50/186 (26.88%), Postives = 81/186 (43.55%), Query Frame = 3
Query:   78 IYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDFNLPAVXXXXXXXXXXXXXXXXXXIVHFHDLIELSGNISNFPDVSIKQTDTAAL 635
            +++S  P +  P   +L +  + F+N + +  +P LI   + ++ T++       K + G  +LGI K DVVMI   NS  F   FL +          NP Y+  E+ KQ   S  KLI+T     DK+++ +   +                   +HF  L E   N S+ P+V I   D  A+
Sbjct:   26 VFKSKLPDI--PISNHLPLHSYCFQNLSQFAHRPCLIVGPASKTFTYADTHLISSKIAAGLSNLGILKGDVVMILLQNSADFVFSFLAISMIGAVATTANPFYTAPEIFKQFTVSKAKLIITQAMYVDKLRNHDGAKL---GEDFKVVTVDDPPENCLHFSVLSE--ANESDVPEVEIHPDDAVAM 204          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL5_ORYSJ (Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa subsp. japonica GN=4CL5 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.139e-11
Identity = 37/130 (28.46%), Postives = 64/130 (49.23%), Query Frame = 3
Query:   78 IYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKV 467
            ++RS  P + +P   +L +  ++F   A    +  LID  +GE+L+F  + +   + + G   +G+     VM+  PNS +F V FL            NP+++  E++KQV  S   ++VT P    KV
Sbjct:    9 VFRSRLPDIAIPD--HLPLHDYVFERLADRRDRACLIDGATGETLSFGDVDALSRRVAAGLSSIGVCHGSTVMLLLPNSVEFAVAFLASSRLGAVTTTANPLHTPPEIAKQVAASGATVVVTEPAFVAKV 136          
BLAST of CX295633 vs. ExPASy Swiss-Prot
Match: 4CL4_ORYSJ (Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa subsp. japonica GN=4CL4 PE=2 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.139e-11
Identity = 38/133 (28.57%), Postives = 66/133 (49.62%), Query Frame = 3
Query:   78 IYRSLRPPLVLPSEPNLSMVHFLFRNSASYPSKPALIDADSGESLTFSQLKSTVIKASHGFRHLGITKNDVVMIFAPNSTQFPVCFLGVXXXXXXXXXXNPVYSVSELSKQVIDSNPKLIVTVPELWDKVKDF 476
            ++RS  P + +PS  +L++  + F       ++P LID  +G   ++ +++    +A+ G R LG+ K DVVM    N  +F   FLG           NP Y+  E+ +Q   +  ++IVT     +KV+ F
Sbjct:   18 VFRSKLPDIEIPS--HLTLQAYCFEKLPEVAARPCLIDGQTGAVYSYGEVEELSRRAAAGLRRLGVGKGDVVMSLLRNCPEFAFTFLGAARLGAATTTANPFYTPHEIHRQASAAGARVIVTEACAVEKVRGF 148          
The following BLAST results are available for this feature:
BLAST of CX295633 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 28
Match NameE-valueIdentityDescription
4CLL3_ORYSJ9.961e-1335.964-coumarate--CoA ligase-like 3 OS=Oryza sativa sub... [more]
4CL3_ORYSJ1.699e-1229.32Probable 4-coumarate--CoA ligase 3 OS=Oryza sativa... [more]
4CLL1_ARATH2.219e-1225.274-coumarate--CoA ligase-like 1 OS=Arabidopsis thal... [more]
4CLL4_ORYSJ1.101e-1132.624-coumarate--CoA ligase-like 4 OS=Oryza sativa sub... [more]
4CL4_ARATH1.879e-1130.074-coumarate--CoA ligase 4 OS=Arabidopsis thaliana ... [more]
4CL2_SOYBN5.466e-1126.884-coumarate--CoA ligase 2 OS=Glycine max PE=2 SV=2[more]
4CL5_ORYSJ7.139e-1128.46Probable 4-coumarate--CoA ligase 5 OS=Oryza sativa... [more]
4CL4_ORYSJ7.139e-1128.57Probable 4-coumarate--CoA ligase 4 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC05074C06SK DroRLeaf1 Citrus clementina cDNA clone C05074C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295633 ID=CX295633; Name=CX295633; organism=Citrus clementina; type=EST; length=642bp
ATAAAATAAAATTCTCTGACTTCCCTTTTTTATCTTGTTTGGTTTGAATG
GAGAAATCTGGTTATGGCCGTGATGGTATCTACAGATCTCTGAGGCCGCC
TTTGGTTCTTCCCAGTGAGCCCAATCTTTCTATGGTTCATTTTCTTTTTA
GAAACTCTGCCTCTTATCCCTCCAAGCCAGCACTCATTGATGCTGATTCT
GGTGAATCTTTGACCTTTTCGCAACTCAAATCCACTGTGATTAAGGCCTC
TCATGGCTTTCGCCATCTGGGTATTACAAAAAATGATGTTGTTATGATCT
TTGCCCCAAATTCAACTCAGTTTCCTGTTTGCTTTCTTGGTGTTATTGCT
ACAGGCGCCATAGCAACAACTGCTAATCCTGTTTACTCTGTCTCTGAACT
GTCAAAGCAAGTTATAGATTCAAATCCAAAACTCATCGTCACTGTACCTG
AATTGTGGGACAAAGTTAAAGACTTCAACTTGCCAGCCGTCCTTTTGGGT
TCGAAAAGTAAACTTGCTTCATGTGGTCTTAGCTCAAGTTCAAAGATTGT
TCATTTTCATGATTTAATTGAATTATCTGGGAATATATCAAATTTTCCAG
ATGTTTCTATTAAGCAGACAGATACTGCTGCTTTGTTGTACT
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