CX295636

Overview
NameCX295636
Unique NameCX295636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: ILKAP_RAT (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Rattus norvegicus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.992e-15
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNG------VAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDN-YLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQK 537
            L ++N GDSRA+LCR         A+ LS +H P + +E +RI+ AGG V   DG RVLGVL +SR+IGD  Y +  V S P++   + T  D  ++LA DGL+ V + E A + + +C   +K
Sbjct:  229 LYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR--DG-RVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDEK 349          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: ILKAP_HUMAN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Homo sapiens GN=ILKAP PE=1 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.992e-15
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNG------VAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDN-YLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQK 537
            L ++N GDSRA+LCR         A+ LS +H P + +E +RI+ AGG V   DG RVLGVL +SR+IGD  Y +  V S P++   + T  D  ++LA DGL+ V + E A + + +C   +K
Sbjct:  229 LYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR--DG-RVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDEK 349          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: ILKAP_BOVIN (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Bos taurus GN=ILKAP PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 4.992e-15
Identity = 51/124 (41.13%), Postives = 74/124 (59.68%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNG------VAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDN-YLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQK 537
            L ++N GDSRA+LCR         A+ LS +H P + +E +RI+ AGG V   DG RVLGVL +SR+IGD  Y +  V S P++   + T  D  ++LA DGL+ V + E A + + +C   +K
Sbjct:  207 LYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR--DG-RVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDEK 327          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C73_ARATH (Probable protein phosphatase 2C 73 OS=Arabidopsis thaliana GN=PPC6-7 PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 56/125 (44.80%), Postives = 70/125 (56.00%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNG-----VAVPLSNDHKPDRPDELLRIEAAGGRVIYWDG-PRVLGV---------LAMSRAIGDNYLKPY-VISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVV 513
            + V+N GDSRAVL         VAV L+ D KP+ P E  RI    GRV   D  P V  V         LAMSRA GD  +K Y ++S PEVT    + +D  +ILASDG+WDV+SN+ A  +V
Sbjct:  190 IYVANVGDSRAVLAMESDEGSLVAVQLTLDFKPNLPQEKERIIGCKGRVFCLDDEPGVHRVWQPDAETPGLAMSRAFGDYCIKEYGLVSVPEVTQRHISTKDHFIILASDGIWDVISNQEAIEIV 314          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: ILKAP_MOUSE (Integrin-linked kinase-associated serine/threonine phosphatase 2C OS=Mus musculus GN=Ilkap PE=2 SV=1)

HSP 1 Score: 80.8777 bits (198), Expect = 8.515e-15
Identity = 51/124 (41.13%), Postives = 73/124 (58.87%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNG------VAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDN-YLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQK 537
            L ++N GDSRA+LCR         A+ LS +H P + +E +RI+ AGG V   DG RVLGVL +SR+IGD  Y +  V S P++   + T  D  ++LA DGL+ V + E A + + +C    K
Sbjct:  229 LYIANLGDSRAILCRYNEESQKHAALSLSKEHNPTQYEERMRIQKAGGNVR--DG-RVLGVLEVSRSIGDGQYKRCGVTSVPDIRRCQLTPNDRFILLACDGLFKVFTPEEAVNFILSCLEDDK 349          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C58_ORYSJ (Probable protein phosphatase 2C 58 OS=Oryza sativa subsp. japonica GN=Os06g0651600 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 1.112e-14
Identity = 51/131 (38.93%), Postives = 70/131 (53.44%), Query Frame = 1
Query:  130 PQCDAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGD------NYLKP---YVISEPEVTVTERTAEDECLILASDGLWDVVSNE 495
            P C   GS          +L+V+N GDSR V+ RNG A  LS DHKP+   E  RI  AGG   Y    RV G + +SRAIGD       +L P    + + P++   E   +D+ L+LA DG+WD +S++
Sbjct:  157 PTC---GSTACVAIVRNSQLVVANAGDSRCVISRNGQAYNLSRDHKPELEAERERILKAGG---YIQMGRVNGTINLSRAIGDIEFKQNKFLSPDKQMLTANPDINTVELCDDDDFLVLACDGIWDCMSSQ 281          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1G_MOUSE (Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE=2 SV=3)

HSP 1 Score: 80.1073 bits (196), Expect = 1.452e-14
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRT 519
            +LIV+N GDSR V+   G A+ +S DHKP+   EL RI+ AGG+V   DG RV G L +SRAIGD++ K           + + P++ V   T + E +++A DG+W+V+S++     +++
Sbjct:  337 QLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVT-MDG-RVNGGLNLSRAIGDHFYKRNKNLPPQEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQS 455          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1G_MACFA (Protein phosphatase 1G OS=Macaca fascicularis GN=PPM1G PE=2 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.452e-14
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRT 519
            +LIV+N GDSR V+   G A+ +S DHKP+   EL RI+ AGG+V   DG RV G L +SRAIGD++ K           + + P++ V   T + E +++A DG+W+V+S++     +++
Sbjct:  341 QLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVT-MDG-RVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQS 459          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1G_HUMAN (Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE=1 SV=1)

HSP 1 Score: 80.1073 bits (196), Expect = 1.452e-14
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRT 519
            +LIV+N GDSR V+   G A+ +S DHKP+   EL RI+ AGG+V   DG RV G L +SRAIGD++ K           + + P++ V   T + E +++A DG+W+V+S++     +++
Sbjct:  340 QLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVT-MDG-RVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVVDFIQS 458          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1G_BOVIN (Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2 SV=2)

HSP 1 Score: 80.1073 bits (196), Expect = 1.452e-14
Identity = 47/121 (38.84%), Postives = 74/121 (61.16%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRT 519
            +LIV+N GDSR V+   G A+ +S DHKP+   EL RI+ AGG+V   DG RV G L +SRAIGD++ K           + + P++ V   T + E +++A DG+W+V+S++     +++
Sbjct:  338 QLIVANAGDSRCVVSEAGKALDMSYDHKPEDEVELARIKNAGGKVT-MDG-RVNGGLNLSRAIGDHFYKRNKNLPPEEQMISALPDIKVLTLTDDHEFMVIACDGIWNVMSSQEVIDFIQS 456          
The following BLAST results are available for this feature:
BLAST of CX295636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
ILKAP_RAT4.992e-1541.13Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_HUMAN4.992e-1541.13Integrin-linked kinase-associated serine/threonine... [more]
ILKAP_BOVIN4.992e-1541.13Integrin-linked kinase-associated serine/threonine... [more]
P2C73_ARATH8.515e-1544.80Probable protein phosphatase 2C 73 OS=Arabidopsis ... [more]
ILKAP_MOUSE8.515e-1541.13Integrin-linked kinase-associated serine/threonine... [more]
P2C58_ORYSJ1.112e-1438.93Probable protein phosphatase 2C 58 OS=Oryza sativa... [more]
PPM1G_MOUSE1.452e-1438.84Protein phosphatase 1G OS=Mus musculus GN=Ppm1g PE... [more]
PPM1G_MACFA1.452e-1438.84Protein phosphatase 1G OS=Macaca fascicularis GN=P... [more]
PPM1G_HUMAN1.452e-1438.84Protein phosphatase 1G OS=Homo sapiens GN=PPM1G PE... [more]
PPM1G_BOVIN1.452e-1438.84Protein phosphatase 1G OS=Bos taurus GN=PPM1G PE=2... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05074C09SK DroRLeaf1 Citrus clementina cDNA clone C05074C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295636 ID=CX295636; Name=CX295636; organism=Citrus clementina; type=EST; length=759bp
AGGATTCGGCCGAGGGAATCCGTGAAGTGGAAGCAGACAATGCAGGCGAG
CTTTGGGAAGATGGATAAGGAGGTGCAAGATTGGAGTGTGAGTTCCAAGA
TCTCTAACTGCCGCTGCGAGTTACAGACTCCGCAGTGCGACGCCGTTGGA
TCTACCGCCGTCGTTGCTGTCGTCACTCCTGGAAAGCTTATCGTCTCTAA
CTGCGGCGACTCTCGTGCTGTGCTCTGCCGAAACGGCGTCGCGGTTCCTC
TGTCCAACGATCATAAACCTGATCGCCCGGATGAGTTGCTTAGAATCGAA
GCCGCCGGCGGCCGTGTGATTTACTGGGACGGTCCGAGAGTGCTTGGCGT
TCTCGCGATGTCGAGAGCGATCGGAGACAATTACTTAAAGCCGTATGTGA
TATCGGAGCCGGAGGTGACCGTGACTGAGCGTACGGCGGAGGATGAGTGT
TTGATTCTGGCGAGCGATGGGTTATGGGACGTGGTGTCGAACGAGACGGC
GTGCAGCGTGGTGCGCACGTGTTTCCGAGCTCAGAAGGCGGCGGCTGCAG
CTTCACCACCCGGATCGCCGGGGAGCGAGGTGGCAGTGTCTGGTCAAAGC
TCTGACAAAGCTTGCTTGGACGCATCAATTTTGTTGACCAAGCTGGCCTT
GGCTAGGCGGAGTTCGGATAATGTCAGCGTTGTGGTGGTCGATTTAGGAG
GAATCAAGTCAAAGCAGGGATTAGTAGTAATTAAATGAGTATATATATAT
ATACGCAAT
back to top