CX295636

Overview
NameCX295636
Unique NameCX295636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295636_ssr740 microsatellite CX295636_ssr740:740..753. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11476 contig Ccv1_Contig11476:656..1414. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1B_RAT (Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm1b PE=2 SV=1)

HSP 1 Score: 97.4413 bits (241), Expect = 8.792e-20
Identity = 61/136 (44.85%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  139 DAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRT 519
            D  GS        P  +   NCGDSRAVLCRNG     + DHKP  P E  RI+ AGG V+     RV G LA+SRA+GD   K           V  EPEV    R  EDE ++LA DG+WDV+SNE  C  V +
Sbjct:  128 DRSGSTAVGVMISPTHIYFINCGDSRAVLCRNGQVCFSTQDHKPCNPMEKERIQNAGGSVMI---QRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFVVLACDGIWDVMSNEELCEFVNS 260          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1B_HUMAN (Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE=1 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 4.363e-19
Identity = 61/136 (44.85%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  139 DAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRT 519
            D  GS        P  +   NCGDSRAVL RNG     + DHKP  P E  RI+ AGG V+     RV G LA+SRA+GD   K           V  EPEV    R  EDE +ILA DG+WDV+SNE  C  V++
Sbjct:  128 DRSGSTAVGVMISPKHIYFINCGDSRAVLYRNGQVCFSTQDHKPCNPREKERIQNAGGSVMI---QRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEYVKS 260          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C13_ARATH (Probable protein phosphatase 2C 13 OS=Arabidopsis thaliana GN=At1g48040 PE=2 SV=2)

HSP 1 Score: 94.7449 bits (234), Expect = 5.699e-19
Identity = 59/121 (48.76%), Postives = 77/121 (63.64%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK-PY------VISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFR 528
            L+V+N GD RAVLCR GVAV +S DH+     E  RIE  GG   Y++   + GVLA++RAIGD  LK P+      +IS+PE+     T +DE LILA DG+WDV+S++ A S VR   R
Sbjct:  200 LLVANAGDCRAVLCRRGVAVDMSFDHRSTYEPERRRIEDLGG---YFEDGYLNGVLAVTRAIGDWELKNPFTDSSSPLISDPEIGQIILTEDDEFLILACDGIWDVLSSQNAVSNVRQGLR 317          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1B_BOVIN (Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.658e-18
Identity = 60/136 (44.12%), Postives = 72/136 (52.94%), Query Frame = 1
Query:  139 DAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRT 519
            D  GS        P  +   NCGDSRAVL R+G     + DHKP  P E  RI+ AGG V+     RV G LA+SRA+GD   K           V  EPEV    R  EDE +ILA DG+WDV+SNE  C  V++
Sbjct:  128 DRSGSTAVGVMISPKHIYFINCGDSRAVLYRSGQVCFSTQDHKPCNPREKERIQNAGGSVMI---QRVNGSLAVSRALGDYDYKCVDGKGPTEQLVSPEPEVYEILRAEEDEFIILACDGIWDVMSNEELCEFVKS 260          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C44_ORYSJ (Probable protein phosphatase 2C 44 OS=Oryza sativa subsp. japonica GN=Os04g0609600 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.165e-18
Identity = 52/111 (46.85%), Postives = 70/111 (63.06%), Query Frame = 1
Query:  193 VSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDG--PRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRT 519
            V+N GDSRAV+C  G A  L+ DH+P   +E  RIE  GG V  + G  PRV G LA++RA GD  LK ++ SEP+V      +  E +ILASDGLW V+ N+ A  +V++
Sbjct:  178 VANVGDSRAVVCERGAANQLTVDHEPHTTNERQRIEKQGGFVTTFPGDVPRVNGQLAVARAFGDQSLKAHLSSEPDVRHVPINSSIEFVILASDGLWKVMKNQEAVDLVKS 288          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C31_ARATH (Protein kinase and PP2C-like domain-containing protein OS=Arabidopsis thaliana GN=At2g40860/At2g40870 PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.165e-18
Identity = 56/131 (42.75%), Postives = 78/131 (59.54%), Query Frame = 1
Query:  130 PQCDAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYW-DGPRVLGV-LAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            P C A+ S          KL V+N GDSRA+LCR G    LS  H     DE  R+   GGR+ +  D  RV    L ++R+IGD+ LKP V +EPE++ T  +A+DE L++ASDGLWDV+++E    ++R
Sbjct:  490 PGCTAIASLLVE-----NKLFVANVGDSRAILCRAGHPFALSKAHLATCIDERNRVIGEGGRIEWLVDTWRVAPAGLQVTRSIGDDDLKPAVTAEPEISETILSADDEFLVMASDGLWDVMNDEEVIGIIR 615          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1L_MOUSE (Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.828e-18
Identity = 59/137 (43.07%), Postives = 79/137 (57.66%), Query Frame = 1
Query:  118 ELQTPQCDAVGSXXXXXXXXPGKLIVSNCGDSRAVLC-RNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK--PYVISEPEV-TVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            E  T   D  G+           L V+N GDSR VLC ++G A+PLS+DHKP +  E  RI+ AGG + +    RV G+LAMSR++GD  LK    VI +P++ T      + E +ILASDGLWD  SNE A   ++
Sbjct:  182 EKLTVSYDEAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAVRFIK 318          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1L_HUMAN (Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.828e-18
Identity = 59/137 (43.07%), Postives = 79/137 (57.66%), Query Frame = 1
Query:  118 ELQTPQCDAVGSXXXXXXXXPGKLIVSNCGDSRAVLC-RNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK--PYVISEPEV-TVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            E  T   D  G+           L V+N GDSR VLC ++G A+PLS+DHKP +  E  RI+ AGG + +    RV G+LAMSR++GD  LK    VI +P++ T      + E +ILASDGLWD  SNE A   ++
Sbjct:  182 EKLTVSYDEAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAVRFIK 318          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1L_BOVIN (Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.828e-18
Identity = 59/137 (43.07%), Postives = 79/137 (57.66%), Query Frame = 1
Query:  118 ELQTPQCDAVGSXXXXXXXXPGKLIVSNCGDSRAVLC-RNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK--PYVISEPEV-TVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            E  T   D  G+           L V+N GDSR VLC ++G A+PLS+DHKP +  E  RI+ AGG + +    RV G+LAMSR++GD  LK    VI +P++ T      + E +ILASDGLWD  SNE A   ++
Sbjct:  182 EKLTVSYDEAGTTCLIALLSDKDLTVANVGDSRGVLCDKDGNAIPLSHDHKPYQLKERKRIKRAGGFISFNGSWRVQGILAMSRSLGDYPLKNLNVVIPDPDILTFDLDKLQPEFMILASDGLWDAFSNEEAVRFIK 318          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C58_ARATH (Probable protein phosphatase 2C 58 OS=Arabidopsis thaliana GN=At4g28400 PE=1 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.828e-18
Identity = 53/114 (46.49%), Postives = 74/114 (64.91%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRV--IYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRT 519
            KL+V+N GDSRAV+ +NGVA  LS DH+P +  E   IE+ GG V  I  D PRV G LA++RA GD  LK ++ SEP++T        E ++ ASDG+W V+SN+ A   +++
Sbjct:  140 KLVVANVGDSRAVMSKNGVAHQLSVDHEPSK--EKKEIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKLHLSSEPDITHQTIDDHTEFILFASDGIWKVLSNQEAVDAIKS 251          
The following BLAST results are available for this feature:
BLAST of CX295636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
PPM1B_RAT8.792e-2044.85Protein phosphatase 1B OS=Rattus norvegicus GN=Ppm... [more]
PPM1B_HUMAN4.363e-1944.85Protein phosphatase 1B OS=Homo sapiens GN=PPM1B PE... [more]
P2C13_ARATH5.699e-1948.76Probable protein phosphatase 2C 13 OS=Arabidopsis ... [more]
PPM1B_BOVIN1.658e-1844.12Protein phosphatase 1B OS=Bos taurus GN=PPM1B PE=2... [more]
P2C44_ORYSJ2.165e-1846.85Probable protein phosphatase 2C 44 OS=Oryza sativa... [more]
P2C31_ARATH2.165e-1842.75Protein kinase and PP2C-like domain-containing pro... [more]
PPM1L_MOUSE2.828e-1843.07Protein phosphatase 1L OS=Mus musculus GN=Ppm1l PE... [more]
PPM1L_HUMAN2.828e-1843.07Protein phosphatase 1L OS=Homo sapiens GN=PPM1L PE... [more]
PPM1L_BOVIN2.828e-1843.07Protein phosphatase 1L OS=Bos taurus GN=PPM1L PE=2... [more]
P2C58_ARATH2.828e-1846.49Probable protein phosphatase 2C 58 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC05074C09SK DroRLeaf1 Citrus clementina cDNA clone C05074C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295636 ID=CX295636; Name=CX295636; organism=Citrus clementina; type=EST; length=759bp
AGGATTCGGCCGAGGGAATCCGTGAAGTGGAAGCAGACAATGCAGGCGAG
CTTTGGGAAGATGGATAAGGAGGTGCAAGATTGGAGTGTGAGTTCCAAGA
TCTCTAACTGCCGCTGCGAGTTACAGACTCCGCAGTGCGACGCCGTTGGA
TCTACCGCCGTCGTTGCTGTCGTCACTCCTGGAAAGCTTATCGTCTCTAA
CTGCGGCGACTCTCGTGCTGTGCTCTGCCGAAACGGCGTCGCGGTTCCTC
TGTCCAACGATCATAAACCTGATCGCCCGGATGAGTTGCTTAGAATCGAA
GCCGCCGGCGGCCGTGTGATTTACTGGGACGGTCCGAGAGTGCTTGGCGT
TCTCGCGATGTCGAGAGCGATCGGAGACAATTACTTAAAGCCGTATGTGA
TATCGGAGCCGGAGGTGACCGTGACTGAGCGTACGGCGGAGGATGAGTGT
TTGATTCTGGCGAGCGATGGGTTATGGGACGTGGTGTCGAACGAGACGGC
GTGCAGCGTGGTGCGCACGTGTTTCCGAGCTCAGAAGGCGGCGGCTGCAG
CTTCACCACCCGGATCGCCGGGGAGCGAGGTGGCAGTGTCTGGTCAAAGC
TCTGACAAAGCTTGCTTGGACGCATCAATTTTGTTGACCAAGCTGGCCTT
GGCTAGGCGGAGTTCGGATAATGTCAGCGTTGTGGTGGTCGATTTAGGAG
GAATCAAGTCAAAGCAGGGATTAGTAGTAATTAAATGAGTATATATATAT
ATACGCAAT
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