CX295636

Overview
NameCX295636
Unique NameCX295636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295636_ssr740 microsatellite CX295636_ssr740:740..753. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11476 contig Ccv1_Contig11476:656..1414. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1A_RABIT (Protein phosphatase 1A OS=Oryctolagus cuniculus GN=PPM1A PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17
Identity = 59/137 (43.07%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  139 DAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAE-DECLILASDGLWDVVSNETACSVVRT 519
            D  GS        P      NCGDSR +LCRN      + DHKP  P E  RI+ AGG V+     RV G LA+SRA+GD   K           V  EPEV   ER+ E D+ +ILA DG+WDV+ NE  C  VR+
Sbjct:  123 DRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMI---QRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRS 256          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1A_MOUSE (Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17
Identity = 59/137 (43.07%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  139 DAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAE-DECLILASDGLWDVVSNETACSVVRT 519
            D  GS        P      NCGDSR +LCRN      + DHKP  P E  RI+ AGG V+     RV G LA+SRA+GD   K           V  EPEV   ER+ E D+ +ILA DG+WDV+ NE  C  VR+
Sbjct:  123 DRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMI---QRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRS 256          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1A_HUMAN (Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17
Identity = 59/137 (43.07%), Postives = 71/137 (51.82%), Query Frame = 1
Query:  139 DAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAE-DECLILASDGLWDVVSNETACSVVRT 519
            D  GS        P      NCGDSR +LCRN      + DHKP  P E  RI+ AGG V+     RV G LA+SRA+GD   K           V  EPEV   ER+ E D+ +ILA DG+WDV+ NE  C  VR+
Sbjct:  123 DRSGSTAVGVLISPQHTYFINCGDSRGLLCRNRKVHFFTQDHKPSNPLEKERIQNAGGSVMI---QRVNGSLAVSRALGDFDYKCVHGKGPTEQLVSPEPEVHDIERSEEDDQFIILACDGIWDVMGNEELCDFVRS 256          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C20_ARATH (Probable protein phosphatase 2C 20 OS=Arabidopsis thaliana GN=PPC3-1.2 PE=1 SV=3)

HSP 1 Score: 89.3521 bits (220), Expect = 2.394e-17
Identity = 50/113 (44.25%), Postives = 74/113 (65.49%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRV--IYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRT 519
            L+++N GDSRAV+ +NGVA  LS DH+P +  E   IE+ GG V  I  D PRV G LA++RA GD  LK ++ S+P++       E E ++ ASDG+W V+SN+ A  ++++
Sbjct:  137 LVIANVGDSRAVMSKNGVASQLSVDHEPSK--EQKEIESRGGFVSNIPGDVPRVDGQLAVARAFGDKSLKIHLSSDPDIRDENIDHETEFILFASDGVWKVMSNQEAVDLIKS 247          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: YR307_MIMIV (PP2C-like domain-containing protein R307 OS=Acanthamoeba polyphaga mimivirus GN=MIMI_R307 PE=1 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.127e-17
Identity = 49/114 (42.98%), Postives = 71/114 (62.28%), Query Frame = 1
Query:  193 VSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRV-----IYWD-GPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            V N GD RAVLC+NG+A+PL+ DHKP  PDE  RI+    +      I++D G   +G L++SR+ GD    PYV   P++   +  ++DE +I+A DG+WDV+ N  A + VR
Sbjct:   11 VINIGDCRAVLCKNGLAIPLNKDHKPIWPDEKRRIDRVNEKYETNEKIHFDAGDWRIGDLSVSRSFGDLDNTPYVTHVPDLFDYQLQSDDEFIIMACDGVWDVLENHEAINFVR 124          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C62_ORYSJ (Probable protein phosphatase 2C 62 OS=Oryza sativa subsp. japonica GN=Os07g0507000 PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 3.127e-17
Identity = 55/118 (46.61%), Postives = 74/118 (62.71%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRV--IYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQ 534
            L+V+N GDSRAV+ ++GVA  LS DH+P++  E   IE  GG V  +  D PRV G LA++RA GD  LK ++ SEP+V         + LILASDGLW V+SN+ A   ++    AQ
Sbjct:  147 LVVANVGDSRAVISKSGVAKQLSVDHEPNK--ERHSIEKKGGFVSNLPGDVPRVDGQLAVARAFGDRSLKKHLSSEPDVVEEPIDENTDFLILASDGLWKVMSNQEAVDEIKDFKDAQ 262          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C41_ARATH (Probable protein phosphatase 2C 41 OS=Arabidopsis thaliana GN=At3g16800 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.084e-17
Identity = 68/181 (37.57%), Postives = 95/181 (52.49%), Query Frame = 1
Query:   28 WKQTMQASFGKMDKEVQ-DWSVSSKISNCRCELQTPQCDAVGSXXXXXXXXPGKLIVSNCGDSRAVLCR-----NG-VAVPLSNDHKPDRPDELLRIEAAGGRVIYWDG-PRVLGV---------LAMSRAIGDNYLKPY-VISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            WKQ    +F  +D +++   S+ S  S C       Q D               L+++N GDSRAV+       NG V V LS D KP+ P+E  RI+ + GR+   D  P V  V         LA+SRA GD  LK + ++SEPEVT  + T +D+ LILA+DG+WDV++N  A  +VR
Sbjct:  143 WKQACLKTFSIIDLDLKISPSIDSYCSGCTALTAVLQGD--------------HLVIANAGDSRAVIATTSDDGNGLVPVQLSVDFKPNIPEEAERIKQSDGRLFCLDDEPGVYRVGMPNGGSLGLAVSRAFGDYCLKDFGLVSEPEVTYRKITDKDQFLILATDGMWDVMTNNEAVEIVR 309          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C12_ORYSJ (Probable protein phosphatase 2C 12 OS=Oryza sativa subsp. japonica GN=Os02g0224100 PE=2 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 4.084e-17
Identity = 69/187 (36.90%), Postives = 93/187 (49.73%), Query Frame = 1
Query:   25 KWKQTMQASFGKMDKEVQDWSVSSKISNCRCELQTP-QCDAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNG-----VAVPLSNDHKPDRPDELLRIEAAGGRVI-YWDGPRVLGV---------LAMSRAIGDNYLKPY-VISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQ 534
            +W+Q   ++F  MD E++              LQ    C   G+           LI++N GDSRAVL          AV L+ DHKP  P+E  RI+ +GGRV    D P V+ V         LAM+R++GD  LK + VI  PEVT    T  D  ++LA+DG+WDV+SNE   S+V    R Q
Sbjct:  151 EWRQACASAFAAMDGELK--------------LQPNLDCAFSGTTAVCAIKQGRDLIIANLGDSRAVLATMSDTGYLQAVQLTVDHKPSVPEEAARIKRSGGRVFGLKDEPGVMRVWLPGENSPGLAMARSLGDMRLKRHGVIPAPEVTSRRVTGADLFMVLATDGVWDVLSNEEVVSIVCATPRKQ 323          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1F_MOUSE (Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 50/109 (45.87%), Postives = 64/109 (58.72%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVV 513
            L V+  GDS+ +L + G  V L   HKP+R DE  RIEA GG V   D  RV G LA+SRAIGD + KPYV  E +    E T  ++ L+LA DG +DVV +     +V
Sbjct:  264 LHVAWLGDSQVILVQQGRVVKLMEPHKPERQDEKARIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGSEDYLLLACDGFFDVVPHHEVTGLV 372          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1F_HUMAN (Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE=1 SV=3)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 49/117 (41.88%), Postives = 69/117 (58.97%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQK 537
            L V+  GDS+ +L + G  V L   H+P+R DE  RIEA GG V + D  RV G LA+SRAIGD + KPYV  E +      T  ++ L+LA DG +DVV ++    +V++    Q+
Sbjct:  267 LHVAWLGDSQVILVQQGQVVKLMEPHRPERQDEKARIEALGGFVSHMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRALTGSEDYLLLACDGFFDVVPHQEVVGLVQSHLTRQQ 383          
The following BLAST results are available for this feature:
BLAST of CX295636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
PPM1A_RABIT2.394e-1743.07Protein phosphatase 1A OS=Oryctolagus cuniculus GN... [more]
PPM1A_MOUSE2.394e-1743.07Protein phosphatase 1A OS=Mus musculus GN=Ppm1a PE... [more]
PPM1A_HUMAN2.394e-1743.07Protein phosphatase 1A OS=Homo sapiens GN=PPM1A PE... [more]
P2C20_ARATH2.394e-1744.25Probable protein phosphatase 2C 20 OS=Arabidopsis ... [more]
YR307_MIMIV3.127e-1742.98PP2C-like domain-containing protein R307 OS=Acanth... [more]
P2C62_ORYSJ3.127e-1746.61Probable protein phosphatase 2C 62 OS=Oryza sativa... [more]
P2C41_ARATH4.084e-1737.57Probable protein phosphatase 2C 41 OS=Arabidopsis ... [more]
P2C12_ORYSJ4.084e-1736.90Probable protein phosphatase 2C 12 OS=Oryza sativa... [more]
PPM1F_MOUSE5.334e-1745.87Protein phosphatase 1F OS=Mus musculus GN=Ppm1f PE... [more]
PPM1F_HUMAN5.334e-1741.88Protein phosphatase 1F OS=Homo sapiens GN=PPM1F PE... [more]

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Properties
Property NameValue
Genbank descriptionC05074C09SK DroRLeaf1 Citrus clementina cDNA clone C05074C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295636 ID=CX295636; Name=CX295636; organism=Citrus clementina; type=EST; length=759bp
AGGATTCGGCCGAGGGAATCCGTGAAGTGGAAGCAGACAATGCAGGCGAG
CTTTGGGAAGATGGATAAGGAGGTGCAAGATTGGAGTGTGAGTTCCAAGA
TCTCTAACTGCCGCTGCGAGTTACAGACTCCGCAGTGCGACGCCGTTGGA
TCTACCGCCGTCGTTGCTGTCGTCACTCCTGGAAAGCTTATCGTCTCTAA
CTGCGGCGACTCTCGTGCTGTGCTCTGCCGAAACGGCGTCGCGGTTCCTC
TGTCCAACGATCATAAACCTGATCGCCCGGATGAGTTGCTTAGAATCGAA
GCCGCCGGCGGCCGTGTGATTTACTGGGACGGTCCGAGAGTGCTTGGCGT
TCTCGCGATGTCGAGAGCGATCGGAGACAATTACTTAAAGCCGTATGTGA
TATCGGAGCCGGAGGTGACCGTGACTGAGCGTACGGCGGAGGATGAGTGT
TTGATTCTGGCGAGCGATGGGTTATGGGACGTGGTGTCGAACGAGACGGC
GTGCAGCGTGGTGCGCACGTGTTTCCGAGCTCAGAAGGCGGCGGCTGCAG
CTTCACCACCCGGATCGCCGGGGAGCGAGGTGGCAGTGTCTGGTCAAAGC
TCTGACAAAGCTTGCTTGGACGCATCAATTTTGTTGACCAAGCTGGCCTT
GGCTAGGCGGAGTTCGGATAATGTCAGCGTTGTGGTGGTCGATTTAGGAG
GAATCAAGTCAAAGCAGGGATTAGTAGTAATTAAATGAGTATATATATAT
ATACGCAAT
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