CX295636

Overview
NameCX295636
Unique NameCX295636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295636_ssr740 microsatellite CX295636_ssr740:740..753. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11476 contig Ccv1_Contig11476:656..1414. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1E_RAT (Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm1e PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 50/109 (45.87%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVV 513
            L V+  GDS+ +L R G AV L   HKPDR DE  RIEA GG V+++   RV G L++SRAIGD   KPY+  + +   T     ++ LILA DG +D V+ + A  VV
Sbjct:  339 LHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVV 447          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1E_MOUSE (Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE=1 SV=2)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 50/109 (45.87%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVV 513
            L V+  GDS+ +L R G AV L   HKPDR DE  RIEA GG V+++   RV G L++SRAIGD   KPY+  + +   T     ++ LILA DG +D V+ + A  VV
Sbjct:  339 LHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCVVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVV 447          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C49_ARATH (Probable protein phosphatase 2C 49 OS=Arabidopsis thaliana GN=At3g62260 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.334e-17
Identity = 54/116 (46.55%), Postives = 76/116 (65.52%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK-PY-----VISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            L+V+N GD RAVLCR G A+ +S DHKP    E  R+E +GG  I  DG  +  VLA++RA+GD  LK P+     +ISEPE+     T +DE L++  DG+WDV++++ A S+VR
Sbjct:  200 LMVANAGDCRAVLCRKGRAIDMSEDHKPINLLERRRVEESGG-FITNDG-YLNEVLAVTRALGDWDLKLPHGSQSPLISEPEIKQITLTEDDEFLVIGCDGIWDVLTSQEAVSIVR 313          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1E_HUMAN (Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE=1 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.966e-17
Identity = 49/109 (44.95%), Postives = 66/109 (60.55%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVV 513
            L V+  GDS+ +L R G AV L   HKPDR DE  RIEA GG ++++   RV G L++SRAIGD   KPY+  + +   T     ++ LILA DG +D V+ + A  VV
Sbjct:  353 LHVAWVGDSQVMLVRKGQAVELMKPHKPDREDEKQRIEALGGCIVWFGAWRVNGSLSVSRAIGDAEHKPYICGDADSASTVLDGTEDYLILACDGFYDTVNPDEAVKVV 461          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C27_ARATH (Probable protein phosphatase 2C 27 OS=Arabidopsis thaliana GN=At2g33700 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.966e-17
Identity = 51/117 (43.59%), Postives = 76/117 (64.96%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKP------YVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            +LI++N GD RAVL R G A+ LS DHKP+   E +RIE  GG  + +DG  + G L+++RAIGD ++K        +  EPE+  T+ + +DE LI+  DGLWDV+S++ A ++ R
Sbjct:  195 RLIIANAGDCRAVLGRRGRAIELSKDHKPNCTAEKVRIEKLGG--VVYDG-YLNGQLSVARAIGDWHMKGPKGSACPLSPEPELQETDLSEDDEFLIMGCDGLWDVMSSQCAVTIAR 308          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C04_ORYSJ (Protein kinase and PP2C-like domain-containing protein OS=Oryza sativa subsp. japonica GN=Os01g0541900 PE=2 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.966e-17
Identity = 49/113 (43.36%), Postives = 69/113 (61.06%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAM--SRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            KL V+N GD RA+L R G   P++ DH    P E  RI   G  V +      +G  A+  +R+IGD+ LKP V ++PEV  T  + +DE L++ASDGLWDV+SNE   S+++
Sbjct:  502 KLFVANAGDCRAILNRAGEPFPMTRDHVASCPKERERIVKEGTEVKWQIDTWRVGAAALQVTRSIGDDDLKPAVTAQPEVIETILSPDDEFLVMASDGLWDVMSNEDVLSIIK 614          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C47_ARATH (Probable protein phosphatase 2C 47 OS=Arabidopsis thaliana GN=At3g51470 PE=1 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 9.098e-17
Identity = 51/116 (43.97%), Postives = 75/116 (64.66%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPY------VISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            ++++N GDSRAVL + G A+ LS DHKP+   E LRIE  GG  + +DG  + G L+++RA+GD ++K        +  EPE+     T EDE LI+  DGLWDV+S++ A ++VR
Sbjct:  179 MLIANAGDSRAVLGKRGRAIELSKDHKPNCTSERLRIEKLGG--VIYDG-YLNGQLSVARALGDWHIKGTKGSLCPLSCEPELEEIVLTEEDEYLIMGCDGLWDVMSSQCAVTMVR 291          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPMBL_MOUSE (Probable protein phosphatase 1B-like OS=Mus musculus PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 57/142 (40.14%), Postives = 74/142 (52.11%), Query Frame = 1
Query:  130 PQCDAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFR 528
            P+ D  GS        P  L +++CGDSRA+L R+G     + DH+P RP E  RI  AGG V      RV G LA+SRA+GD   K           V +EPEV    R  EDE ++LASDG+WD +S      +V +  R
Sbjct:  149 PRGDPGGSTAVALLVSPRFLYLAHCGDSRALLSRSGSVAFCTEDHRPHRPRERERIHDAGGTV---RRRRVEGSLAVSRALGDFAYKQAPGRPPELQLVSAEPEVAALARQDEDEFVLLASDGVWDALSGADLAGLVTSRLR 287          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C61_ARATH (Probable protein phosphatase 2C 61 OS=Arabidopsis thaliana GN=At4g32950 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 64/178 (35.96%), Postives = 88/178 (49.44%), Query Frame = 1
Query:   28 WKQTMQASFGKMDKEVQDWSVSSKISNCRCELQTPQCDAVGSXXXXXXXXPGKLIVSNCGDSRAVLCRNGV-----AVPLSNDHKPDRPDELLRIEAAGGRVIYWDG-PRVLGV---------LAMSRAIGDNYLKPY-VISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVV 513
            WK   + S  +MDK +       K+           C A G+          +++V+N GDSRAV+             L+ND KP  P E  RI    GRV+  +  P +L V         LAMSRA GD  LK Y VI+ P+V+  + T+ D+ L+LASDG+WDV+SNE   +VV
Sbjct:  111 WKLICETSCLEMDKRIL------KVKKIH------DCSASGTTAVLAVKHGNQVMVANLGDSRAVMIGTSEDGETKVAQLTNDLKPSVPSEAERIRKRNGRVLALESEPHILRVWLPTENRPGLAMSRAFGDFLLKSYGVIATPQVSTHQITSSDQFLLLASDGVWDVLSNEEVATVV 276          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C43_ARATH (Probable protein phosphatase 2C 43 OS=Arabidopsis thaliana GN=At3g17250 PE=2 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 1.188e-16
Identity = 51/123 (41.46%), Postives = 74/123 (60.16%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPY---------VISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFR 528
            L+V+N GD RAVLCR G AV +S DHK     E  R+E  GG   Y++G  + G LA++RA+GD  +K +         +IS+P++     T EDE LI+  DG+WDV++++ A + VR   R
Sbjct:  242 LMVANVGDCRAVLCRKGKAVDMSFDHKSTFEPERRRVEDLGG---YFEGEYLYGDLAVTRALGDWSIKRFSPLGESLSPLISDPDIQQMILTEEDEFLIMGCDGVWDVMTSQYAVTFVRQGLR 361          
The following BLAST results are available for this feature:
BLAST of CX295636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
PPM1E_RAT5.334e-1745.87Protein phosphatase 1E OS=Rattus norvegicus GN=Ppm... [more]
PPM1E_MOUSE5.334e-1745.87Protein phosphatase 1E OS=Mus musculus GN=Ppm1e PE... [more]
P2C49_ARATH5.334e-1746.55Probable protein phosphatase 2C 49 OS=Arabidopsis ... [more]
PPM1E_HUMAN6.966e-1744.95Protein phosphatase 1E OS=Homo sapiens GN=PPM1E PE... [more]
P2C27_ARATH6.966e-1743.59Probable protein phosphatase 2C 27 OS=Arabidopsis ... [more]
P2C04_ORYSJ6.966e-1743.36Protein kinase and PP2C-like domain-containing pro... [more]
P2C47_ARATH9.098e-1743.97Probable protein phosphatase 2C 47 OS=Arabidopsis ... [more]
PPMBL_MOUSE1.188e-1640.14Probable protein phosphatase 1B-like OS=Mus muscul... [more]
P2C61_ARATH1.188e-1635.96Probable protein phosphatase 2C 61 OS=Arabidopsis ... [more]
P2C43_ARATH1.188e-1641.46Probable protein phosphatase 2C 43 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC05074C09SK DroRLeaf1 Citrus clementina cDNA clone C05074C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295636 ID=CX295636; Name=CX295636; organism=Citrus clementina; type=EST; length=759bp
AGGATTCGGCCGAGGGAATCCGTGAAGTGGAAGCAGACAATGCAGGCGAG
CTTTGGGAAGATGGATAAGGAGGTGCAAGATTGGAGTGTGAGTTCCAAGA
TCTCTAACTGCCGCTGCGAGTTACAGACTCCGCAGTGCGACGCCGTTGGA
TCTACCGCCGTCGTTGCTGTCGTCACTCCTGGAAAGCTTATCGTCTCTAA
CTGCGGCGACTCTCGTGCTGTGCTCTGCCGAAACGGCGTCGCGGTTCCTC
TGTCCAACGATCATAAACCTGATCGCCCGGATGAGTTGCTTAGAATCGAA
GCCGCCGGCGGCCGTGTGATTTACTGGGACGGTCCGAGAGTGCTTGGCGT
TCTCGCGATGTCGAGAGCGATCGGAGACAATTACTTAAAGCCGTATGTGA
TATCGGAGCCGGAGGTGACCGTGACTGAGCGTACGGCGGAGGATGAGTGT
TTGATTCTGGCGAGCGATGGGTTATGGGACGTGGTGTCGAACGAGACGGC
GTGCAGCGTGGTGCGCACGTGTTTCCGAGCTCAGAAGGCGGCGGCTGCAG
CTTCACCACCCGGATCGCCGGGGAGCGAGGTGGCAGTGTCTGGTCAAAGC
TCTGACAAAGCTTGCTTGGACGCATCAATTTTGTTGACCAAGCTGGCCTT
GGCTAGGCGGAGTTCGGATAATGTCAGCGTTGTGGTGGTCGATTTAGGAG
GAATCAAGTCAAAGCAGGGATTAGTAGTAATTAAATGAGTATATATATAT
ATACGCAAT
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