CX295636

Overview
NameCX295636
Unique NameCX295636
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length759
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
CX295636_ssr740 microsatellite CX295636_ssr740:740..753. BLAST: Citrus ESTs to Prunus persica proteins V1
Ccv1_Contig11476 contig Ccv1_Contig11476:656..1414. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1F_RAT (Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm1f PE=2 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 52/117 (44.44%), Postives = 66/117 (56.41%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQK 537
            L V+  GDS+ +L + G  V L   HKP+R DE  RIEA GG V   D  RV G LA+SRAIGD + KPYV  E +    E T  ++ L+LA DG +DVV +     +V      QK
Sbjct:  263 LHVAWLGDSQVILVQQGQVVKLMEPHKPERQDEKSRIEALGGFVSLMDCWRVNGTLAVSRAIGDVFQKPYVSGEADAASRELTGLEDYLLLACDGFFDVVPHHEIPGLVHGHLLRQK 379          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C10_ARATH (Probable protein phosphatase 2C 10 OS=Arabidopsis thaliana GN=At1g34750 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 51/113 (45.13%), Postives = 70/113 (61.95%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDG--PRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            +L V+N GDSRAVL + G A+ ++ DH+P    E L IE  GG V    G  PRV G LA+SRA GD  LK ++ S+P+V  +      + L+LASDGLW V++N+ A  + R
Sbjct:  139 RLWVANVGDSRAVLSQGGQAIQMTIDHEPHT--ERLSIEGKGGFVSNMPGDVPRVNGQLAVSRAFGDKSLKTHLRSDPDVKDSSIDDHTDVLVLASDGLWKVMANQEAIDIAR 249          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C09_ARATH (Probable protein phosphatase 2C 9 OS=Arabidopsis thaliana GN=At1g22280 PE=1 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.552e-16
Identity = 52/120 (43.33%), Postives = 70/120 (58.33%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRV--IYWDGPRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQK 537
            KL ++N GDSRAVL   G    +S DH+P    E   IE  GG V  +  D PRV G LA+SRA GD  LK ++ SEP++      ++ + L+LASDG+W V++NE A  + R     QK
Sbjct:  138 KLWIANVGDSRAVLSHGGAITQMSTDHEPRT--ERSSIEDRGGFVSNLPGDVPRVNGQLAVSRAFGDKGLKTHLSSEPDIKEATVDSQTDVLLLASDGIWKVMTNEEAMEIARRVKDPQK 255          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PP2C3_SCHPO (Protein phosphatase 2C homolog 3 OS=Schizosaccharomyces pombe GN=ptc3 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.457e-16
Identity = 56/119 (47.06%), Postives = 70/119 (58.82%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGD-----NYLKP---YVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            KL  +N GDSR VL   G+A PLS DHKP    E  RI AAGG V   D  RV G LA+SRAIGD     + L+P    V + P+V V E T +DE ++LA DG+WD  +++     VR
Sbjct:  131 KLYCANAGDSRTVLGSKGIAKPLSADHKPSNEAEKARICAAGGFV---DFGRVNGNLALSRAIGDFEFKNSNLEPEKQIVTALPDVVVHEITDDDEFVVLACDGIWDCKTSQQVIEFVR 246          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C57_ORYSJ (Probable protein phosphatase 2C 57 OS=Oryza sativa subsp. japonica GN=Os06g0597200 PE=2 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.457e-16
Identity = 51/118 (43.22%), Postives = 71/118 (60.17%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPY--------VISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            L+V+N GD RAVLC  G A+ +S DHKP    E +RIEA+GG V  +DG  + G L ++RAIGD +++          + +EPEV +   T EDE LI+  DG+WDV  ++ A    R
Sbjct:  181 LLVANAGDCRAVLCCRGKAIEMSRDHKPSCNREKVRIEASGGYV--YDG-YLNGQLNVARAIGDWHMEGMKACDGLGPLSAEPEVMIRNLTEEDEFLIIGCDGIWDVFRSQNAVDFAR 295          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C41_ORYSJ (Probable protein phosphatase 2C 41 OS=Oryza sativa subsp. japonica GN=Os04g0451900/Os04g0452000 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.457e-16
Identity = 52/113 (46.02%), Postives = 67/113 (59.29%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDG--PRVLGVLAMSRAIGDNYLKPYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            KL V+N GDSRAVL + G  + +S DH P+   E   IE  GG V    G  PRV G LA+SRA GD  LK  + SEP++ V +     E L+LASDGLW V++N+    V +
Sbjct:  140 KLWVANVGDSRAVLLKGGRPIQMSTDHDPNV--ERSAIENRGGFVSNMPGDVPRVCGQLAVSRAFGDRNLKSLLKSEPDIKVEDIDYTAELLVLASDGLWKVMNNQEVVDVAK 250          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C22_ARATH (Probable protein phosphatase 2C 22 OS=Arabidopsis thaliana GN=At2g25620 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 3.457e-16
Identity = 51/121 (42.15%), Postives = 72/121 (59.50%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLKPY-----------VISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            L+V+N GD RAVL R G A+ +S DHKP    E  RIEA+GG V  +DG  + G L ++RA+GD +++             +I+EPE+  T+ T EDE LI+  DG+WDV  ++ A    R
Sbjct:  203 LVVANAGDCRAVLSRQGKAIEMSRDHKPMSSKERRRIEASGGHV--FDG-YLNGQLNVARALGDFHMEGMKKKKDGSDCGPLIAEPELMTTKLTEEDEFLIIGCDGVWDVFMSQNAVDFAR 320          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C21_ORYSJ (Probable protein phosphatase 2C 21 OS=Oryza sativa subsp. japonica GN=Os02g0606900 PE=2 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 3.457e-16
Identity = 52/120 (43.33%), Postives = 66/120 (55.00%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDGPRVLGVLAMSRAIGDNYLK---------PYVISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVR 516
            ++IV N GDSR VL +NG A+ LS DHKP    E  RI+ AGG V      R+LG+LA SRAIGD   K           V   P++ V   T + E L++ASDG+WD + N      VR
Sbjct:  154 QIIVGNVGDSRCVLSKNGQAISLSFDHKPHHEAERERIQRAGGHVFL---QRILGMLATSRAIGDFAYKQNRNMPPSQQMVTCVPDIRVENITDDTEFLVIASDGVWDGMRNNNVVQFVR 270          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: PPM1K_MOUSE (Protein phosphatase 1K, mitochondrial OS=Mus musculus GN=Ppm1k PE=1 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 51/118 (43.22%), Postives = 74/118 (62.71%), Query Frame = 1
Query:  184 KLIVSNCGDSRAVLCRNGVAVPLSNDHKPDRPDELLRIEAAGGRVIYWDG---PRVLGVLAMSRAIGDNYLKPY-VISEPEVT-VTERTAEDECLILASDGLWDVVSNETACSVVRTC 522
            +L+V++ GDSRA+LCR G  + L+ DH P+R DE  RI+  GG  + W+    P V G LAM+R+IGD  LK   VI+EPE T +    A+D  L+L +DG+  +V+++  C  V  C
Sbjct:  200 ELVVASVGDSRALLCRKGKPMKLTTDHTPERKDEKERIKKFGG-FVAWNSLGQPHVNGRLAMTRSIGDLDLKASGVIAEPETTRIKLYHADDSFLVLTTDGINFMVNSQEICDFVNQC 316          
BLAST of CX295636 vs. ExPASy Swiss-Prot
Match: P2C48_ORYSJ (Probable protein phosphatase 2C 48 OS=Oryza sativa subsp. japonica GN=Os05g0358500 PE=2 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 7.702e-16
Identity = 60/137 (43.80%), Postives = 72/137 (52.55%), Query Frame = 1
Query:  187 LIVSNCGDSRAVLCRNG---------VAVPLSNDHKPDRPDELLRIEAAGGRVI----------YWDGPRVLGVLAMSRAIGDNYLKPY-VISEPEVTVTERTAEDECLILASDGLWDVVSNETACSVVRTCFRAQK 537
            L+V+N GDSRAVL              AV L+ D KP+ P E  RI    GRV            W   R    LAMSRA GD  +K Y VIS PEVT    TA+D  +ILA+DG+WDVVSNE A  +V +    +K
Sbjct:  180 LVVANVGDSRAVLATASPDDGGGARLAAVQLTVDFKPNLPQERERIMECNGRVQCLADEPGVHRVWRPDREGPGLAMSRAFGDYCVKDYGVISAPEVTHRRITAQDHFVILATDGVWDVVSNEEAVQIVASAPEREK 316          
The following BLAST results are available for this feature:
BLAST of CX295636 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 152
Match NameE-valueIdentityDescription
PPM1F_RAT1.552e-1644.44Protein phosphatase 1F OS=Rattus norvegicus GN=Ppm... [more]
P2C10_ARATH1.552e-1645.13Probable protein phosphatase 2C 10 OS=Arabidopsis ... [more]
P2C09_ARATH1.552e-1643.33Probable protein phosphatase 2C 9 OS=Arabidopsis t... [more]
PP2C3_SCHPO3.457e-1647.06Protein phosphatase 2C homolog 3 OS=Schizosaccharo... [more]
P2C57_ORYSJ3.457e-1643.22Probable protein phosphatase 2C 57 OS=Oryza sativa... [more]
P2C41_ORYSJ3.457e-1646.02Probable protein phosphatase 2C 41 OS=Oryza sativa... [more]
P2C22_ARATH3.457e-1642.15Probable protein phosphatase 2C 22 OS=Arabidopsis ... [more]
P2C21_ORYSJ3.457e-1643.33Probable protein phosphatase 2C 21 OS=Oryza sativa... [more]
PPM1K_MOUSE7.702e-1643.22Protein phosphatase 1K, mitochondrial OS=Mus muscu... [more]
P2C48_ORYSJ7.702e-1643.80Probable protein phosphatase 2C 48 OS=Oryza sativa... [more]

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Properties
Property NameValue
Genbank descriptionC05074C09SK DroRLeaf1 Citrus clementina cDNA clone C05074C09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295636 ID=CX295636; Name=CX295636; organism=Citrus clementina; type=EST; length=759bp
AGGATTCGGCCGAGGGAATCCGTGAAGTGGAAGCAGACAATGCAGGCGAG
CTTTGGGAAGATGGATAAGGAGGTGCAAGATTGGAGTGTGAGTTCCAAGA
TCTCTAACTGCCGCTGCGAGTTACAGACTCCGCAGTGCGACGCCGTTGGA
TCTACCGCCGTCGTTGCTGTCGTCACTCCTGGAAAGCTTATCGTCTCTAA
CTGCGGCGACTCTCGTGCTGTGCTCTGCCGAAACGGCGTCGCGGTTCCTC
TGTCCAACGATCATAAACCTGATCGCCCGGATGAGTTGCTTAGAATCGAA
GCCGCCGGCGGCCGTGTGATTTACTGGGACGGTCCGAGAGTGCTTGGCGT
TCTCGCGATGTCGAGAGCGATCGGAGACAATTACTTAAAGCCGTATGTGA
TATCGGAGCCGGAGGTGACCGTGACTGAGCGTACGGCGGAGGATGAGTGT
TTGATTCTGGCGAGCGATGGGTTATGGGACGTGGTGTCGAACGAGACGGC
GTGCAGCGTGGTGCGCACGTGTTTCCGAGCTCAGAAGGCGGCGGCTGCAG
CTTCACCACCCGGATCGCCGGGGAGCGAGGTGGCAGTGTCTGGTCAAAGC
TCTGACAAAGCTTGCTTGGACGCATCAATTTTGTTGACCAAGCTGGCCTT
GGCTAGGCGGAGTTCGGATAATGTCAGCGTTGTGGTGGTCGATTTAGGAG
GAATCAAGTCAAAGCAGGGATTAGTAGTAATTAAATGAGTATATATATAT
ATACGCAAT
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