CX295637

Overview
NameCX295637
Unique NameCX295637
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length717
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig90 contig Ccv1_Contig90:31..737. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295637 vs. ExPASy Swiss-Prot
Match: CAHC_HORVU (Carbonic anhydrase, chloroplastic OS=Hordeum vulgare PE=2 SV=1)

HSP 1 Score: 127.102 bits (318), Expect = 9.318e-29
Identity = 65/122 (53.28%), Postives = 77/122 (63.11%), Query Frame = 1
Query:  352 SVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFTFDGNTPRFH 717
            +VER+K GF  FK E Y+K P  +  L  GQ+PKYMVFAC+DSRVCPS  L  +PGEAF +RN+AN+VP Y + K              LKV  IVVIGHS CGGIK L+S   DG    FH
Sbjct:  126 AVERLKTGFEKFKTEVYDKKPDFFEPLKAGQAPKYMVFACADSRVCPSVTLGLEPGEAFTIRNIANMVPAYCKNKYAGVGSAIEYAVCALKVEVIVVIGHSRCGGIKALLSLK-DGADDSFH 246          
BLAST of CX295637 vs. ExPASy Swiss-Prot
Match: CYNT_ECOLI (Carbonic anhydrase 1 OS=Escherichia coli (strain K12) GN=cynT PE=1 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  355 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMS 684
            ++ I +GF+ F+RE + K  AL+ +LA  QSP+ +  +CSDSR+ P  V   +PG+ FV+RN  NIVP Y   +              L+VS+IV+ GHS CG +  + S
Sbjct:    1 MKEIIDGFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYG-PEPGGVSASVEYAVAALRVSDIVICGHSNCGAMTAIAS 109          
BLAST of CX295637 vs. ExPASy Swiss-Prot
Match: CYNT_ECO57 (Carbonic anhydrase 1 OS=Escherichia coli O157:H7 GN=cynT PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 5.303e-16
Identity = 43/110 (39.09%), Postives = 64/110 (58.18%), Query Frame = 1
Query:  355 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMS 684
            ++ I +GF+ F+RE + K  AL+ +LA  QSP+ +  +CSDSR+ P  V   +PG+ FV+RN  NIVP Y   +              L+VS+IV+ GHS CG +  + S
Sbjct:    1 MKEIIDGFLKFQREAFPKREALFKQLATQQSPRTLFISCSDSRLVPELVTQREPGDLFVIRNAGNIVPSYG-PEPGGVSASVEYAVAALRVSDIVICGHSNCGAMTAIAS 109          
BLAST of CX295637 vs. ExPASy Swiss-Prot
Match: CYNT_SYNE7 (Carbonic anhydrase OS=Synechococcus elongatus (strain PCC 7942) GN=icfA PE=3 SV=1)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 37/109 (33.94%), Postives = 58/109 (53.21%), Query Frame = 1
Query:  355 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLM 681
            + ++ EG  HF+   Y  +  L+ + AKGQ P+ +   CSDSR+ P+ +     GE FV+RN  N++PP+                  L + ++VV GHS CG +KGL+
Sbjct:    1 MRKLIEGLRHFRTSYYPSHRDLFEQFAKGQHPRVLFITCSDSRIDPNLITQSGMGELFVIRNAGNLIPPFGAANGGEGASIEYAIAA-LNIEHVVVCGHSHCGAMKGLL 108          
BLAST of CX295637 vs. ExPASy Swiss-Prot
Match: CAN_EMENI (Carbonic anhydrase OS=Emericella nidulans GN=AN1805 PE=1 SV=2)

HSP 1 Score: 79.337 bits (194), Expect = 2.228e-14
Identity = 46/126 (36.51%), Postives = 67/126 (53.17%), Query Frame = 1
Query:  328 PSDTKAF-----DSVERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMSFT 690
            PSD KA       + ++I E    +   K   +P  +++LA GQSP+Y+   CSDSRV  + ++    GE FV RN+AN+VP  D +              HLKV +IVV GH  CGG++  ++ T
Sbjct:    4 PSDRKAVTRYLEQTHDKIFESNRAWVASKKGADPEFFNKLAAGQSPEYLYIGCSDSRVPANEIMGLDAGEVFVHRNIANVVPTIDLSSMSVINYAVG----HLKVKHIVVCGHYNCGGVQAALTPT 125          
BLAST of CX295637 vs. ExPASy Swiss-Prot
Match: CYNT_PSEAE (Carbonic anhydrase OS=Pseudomonas aeruginosa GN=cynT PE=3 SV=1)

HSP 1 Score: 78.9518 bits (193), Expect = 2.910e-14
Identity = 43/107 (40.19%), Postives = 57/107 (53.27%), Query Frame = 1
Query:  364 IKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLMS 684
            I +GF+ F+R+ Y     L+  LA  Q+PK +  ACSDSRV P  +   +PGE FV+RN  NIVP Y                + L V +IVV GHS CG +  + S
Sbjct:    4 IIDGFLRFQRDAYPARSQLFKSLATRQAPKALFIACSDSRVVPELLTQREPGELFVIRNAGNIVPGYGPQPGGVSASVEYAVAV-LGVGDIVVCGHSDCGAMGAIAS 109          
BLAST of CX295637 vs. ExPASy Swiss-Prot
Match: CYNT_SYNY3 (Carbonic anhydrase OS=Synechocystis sp. (strain PCC 6803) GN=icfA PE=1 SV=1)

HSP 1 Score: 78.1814 bits (191), Expect = 4.964e-14
Identity = 37/109 (33.94%), Postives = 61/109 (55.96%), Query Frame = 1
Query:  355 VERIKEGFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXLHLKVSNIVVIGHSACGGIKGLM 681
            ++R+ EG   F+   +  +  L+ +L+ GQ P+ +   CSDSRV P+ +   + G+ FV+RN  NI+PPY                + L+++ I+V GHS CG +KGL+
Sbjct:    1 MQRLIEGLQKFREGYFSSHRDLFEQLSHGQHPRILFICCSDSRVDPNLITQSEVGDLFVIRNAGNIIPPYGAAN-GGEGAAMEYALVALEINQIIVCGHSHCGAMKGLL 108          
BLAST of CX295637 vs. ExPASy Swiss-Prot
Match: CYNT_HELPJ (Carbonic anhydrase OS=Helicobacter pylori J99 GN=cynT PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.597e-12
Identity = 39/116 (33.62%), Postives = 58/116 (50.00%), Query Frame = 1
Query:  373 GFIHFKREKYEKNPALYSELAKGQSPKYMVFACSDSRVCPSHVLDFQPGEAFVVRNVANIVPPYDQTKXXXXXXXXXXXXL-HLKVSNIVVIGHS---ACGGIKGLMSFTFDGNTP 708
            G + F+  +YE+   LY  L   Q P  +  +C DSRV P+ +   QPGE +V+RN+ N++PP    K            + H+ V N+++ GHS   ACG I  +   T    TP
Sbjct:    6 GALEFQENEYEEFKELYESLKTKQKPHTLFISCVDSRVVPNLITGTQPGELYVIRNMGNVIPPKTSYKESLSTIASVEYAIAHVGVQNLIICGHSDCGACGSIHLIHDETTKAKTP 121          
The following BLAST results are available for this feature:
BLAST of CX295637 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 18
Match NameE-valueIdentityDescription
CAHC_HORVU9.318e-2953.28Carbonic anhydrase, chloroplastic OS=Hordeum vulga... [more]
CYNT_ECOLI5.303e-1639.09Carbonic anhydrase 1 OS=Escherichia coli (strain K... [more]
CYNT_ECO575.303e-1639.09Carbonic anhydrase 1 OS=Escherichia coli O157:H7 G... [more]
CYNT_SYNE72.228e-1433.94Carbonic anhydrase OS=Synechococcus elongatus (str... [more]
CAN_EMENI2.228e-1436.51Carbonic anhydrase OS=Emericella nidulans GN=AN180... [more]
CYNT_PSEAE2.910e-1440.19Carbonic anhydrase OS=Pseudomonas aeruginosa GN=cy... [more]
CYNT_SYNY34.964e-1433.94Carbonic anhydrase OS=Synechocystis sp. (strain PC... [more]
CYNT_HELPJ1.597e-1233.62Carbonic anhydrase OS=Helicobacter pylori J99 GN=c... [more]

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Properties
Property NameValue
Genbank descriptionC05074C10SK DroRLeaf1 Citrus clementina cDNA clone C05074C10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295637 ID=CX295637; Name=CX295637; organism=Citrus clementina; type=EST; length=717bp
GATTCGGCCGAGGCTTCGATCATAACTGGTGCCTTACTTCTGTTTCTCAA
GCTCAATCCTCTCTCATCAAAAGCTCCACATTACGTCCCTCCATCGTTGC
AAGGCTCAACTCTCCTGCTTCTCCTCCTAGCCTCATCCGAAACGAGCCCG
TTTTTGCTGCACCAGCTCCTATCATCAACCCTAACTGGAGGGAAGACATG
GCAAATCAGTCGTACGAGGAAGCCATTGAAGCTCTCAAGAAACTTCTCAA
TGCTTAAAACGGAGAAGGAAGACTTGAAACCTGTTGCTGCTGCAAAAGTA
GAGCAGATTACTGCGCAGCTACAGACTCCATCTGACACCAAAGCATTTGA
TTCCGTGGAGAGGATCAAAGAGGGCTTCATTCACTTCAAGAGAGAAAAAT
ACGAGAAAAATCCAGCTCTGTACTCTGAGCTCGCCAAAGGCCAAAGCCCG
AAGTATATGGTATTTGCCTGCTCAGACTCCAGGGTTTGCCCGTCCCATGT
GTTGGATTTTCAACCTGGGGAAGCTTTCGTGGTTCGCAATGTTGCTAACA
TTGTTCCACCCTATGATCAGACTAAATATGCTGGAGTTGGAGCTGCTGTC
GAGTATGCAGTTTTGCATCTCAAGGTTTCAAACATTGTGGTCATTGGGCA
CAGCGCCTGTGGTGGCATCAAAGGACTCATGTCTTTCACATTTGATGGAA
ACACTCCACGATTTCAT
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