CX295644

Overview
NameCX295644
Unique NameCX295644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1571..2256. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX2_ORYSJ (Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=LOX1.1 PE=2 SV=2)

HSP 1 Score: 252.677 bits (644), Expect = 1.358e-66
Identity = 120/235 (51.06%), Postives = 160/235 (68.09%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGK---PQWKQVFLPSWH------STECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHGDKKHEPWWP 683
            GTL P+AIEL+ P +           V+ P+        + E W+W+LAKA+V  +D  +HQL+SHWL TH   EP+VIATNRQLSV HP+++LL PH+R TM IN LARQ L+N  GI E +  P K+++  SS  Y K W F  +ALP DL+ RG+AV DP++P+ ++L IEDYP+ANDGL +W AI+QW T+Y+  YYP+  +++ D ELQAWW E+R VGHGD K   WWP
Sbjct:  460 GTLAPLAIELSLPHLQDDGLITARSTVYTPAARGGTGAGAVEWWVWQLAKAYVNVNDYCWHQLISHWLNTHAVMEPFVIATNRQLSVAHPVHKLLLPHYRDTMTINALARQTLINGGGIFEMTVFPRKHALAMSSAFY-KDWSFADQALPDDLVKRGVAVPDPASPYKVRLLIEDYPYANDGLAVWHAIEQWATEYLAIYYPNDGVLQGDAELQAWWKEVREVGHGDIKDATWWP 693          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOXE3_MOUSE (Epidermis-type lipoxygenase 3 OS=Mus musculus GN=Aloxe3 PE=2 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.495e-30
Identity = 77/212 (36.32%), Postives = 121/212 (57.08%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWL-WKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEI 638
            G L P+AI+L++ P    P    +FLP    T+C L W LAK  V   +   H+  +H+L TH   E + +AT RQL + HP+Y+LL PH RYT+++N +AR  L+N DG+++   S G+  + +        + +    LP  + +RG+            LTI +Y + +DGL +W AI+++V++ V++YYP  + V+ D ELQAW  EI
Sbjct:  359 GVLLPLAIQLSQTPGPESP----IFLP----TDCELDWLLAKTWVRNSEFLVHENNTHFLCTHLLCEAFSMATLRQLPLCHPVYKLLLPHTRYTLQVNTIARATLLNPDGLVDKVTSIGRQGLIYLMSTGLAHFTYTDFCLPDSIRARGV------------LTIPNYHYRDDGLKIWAAIERFVSEIVSYYYPSDASVQQDCELQAWVGEI 550          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOXE3_HUMAN (Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=ALOXE3 PE=1 SV=1)

HSP 1 Score: 131.724 bits (330), Expect = 3.495e-30
Identity = 75/211 (35.55%), Postives = 117/211 (55.45%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEI 638
            G L P+AI+L++ P    P    +FLP+      W W LAK  V   +   H+  +H+L TH   E + +AT RQL + HPIY+LL PH RYT+++N +AR  L+N +G+++   S G+  + +        + + +  LP  L +RG+            L I +Y + +DGL +W AI+ +V++ V +YYP  + V+ D ELQAW  EI
Sbjct:  359 GALVPLAIQLSQTPGPDSP----IFLPTDSE---WDWLLAKTWVRNSEFLVHENNTHFLCTHLLCEAFAMATLRQLPLCHPIYKLLLPHTRYTLQVNTIARATLLNPEGLVDQVTSIGRQGLIYLMSTGLAHFTYTNFCLPDSLRARGV------------LAIPNYHYRDDGLKIWAAIESFVSEIVGYYYPSDASVQQDSELQAWTGEI 550          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LX15B_MOUSE (Arachidonate 15-lipoxygenase B OS=Mus musculus GN=Alox15b PE=1 SV=1)

HSP 1 Score: 129.798 bits (325), Expect = 1.328e-29
Identity = 81/216 (37.50%), Postives = 115/216 (53.24%), Query Frame = 3
Query:    3 AGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVG 650
            +G L PIAI+L + P    P    +FLPS    + W W LAK  V   +   H+ V+H L  H   E + +AT RQL   HP+++LL PH RYT+ IN LAR+ LV    +I+ S   G            +Q  +    LP+D+ +RG  VED          I  Y + +DG+ +W AIK +V++ V+ YYP  + V+ D+ELQAW  EI + G
Sbjct:  324 SGPLLPIAIQLKQTPGPDNP----IFLPS---DDTWDWLLAKTWVRNSEFYIHEAVTHLLHAHLIPEVFALATLRQLPRCHPLFKLLIPHIRYTLHINTLARELLVAPGKLIDKSTGLGTGGFSDLIKRNMEQLNYSVLCLPEDIRARG--VED----------IPGYYYRDDGMQIWGAIKSFVSEIVSIYYPSDTSVQDDQELQAWVREIFSEG 520          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LX15B_HUMAN (Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=ALOX15B PE=2 SV=2)

HSP 1 Score: 125.176 bits (313), Expect = 3.271e-28
Identity = 74/215 (34.42%), Postives = 115/215 (53.49%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVG 650
            G L P+AI+L++ P    P    +FLP+    + W W LAK  V   +  +H+ ++H L +H   E + +AT RQL   HP+++LL PH RYT+ IN LAR+ L+    +++ S   G            KQ  +    LP+D+ +RG  VED          I  Y + +DG+ +W A++++V++ +  YYP    V+ D ELQAW  EI + G
Sbjct:  324 GPLLPLAIQLSQTPGPNSP----IFLPT---DDKWDWLLAKTWVRNAEFSFHEALTHLLHSHLLPEVFTLATLRQLPHCHPLFKLLIPHTRYTLHINTLARELLIVPGQVVDRSTGIGIEGFSELIQRNMKQLNYSLLCLPEDIRTRG--VED----------IPGYYYRDDGMQIWGAVERFVSEIIGIYYPSDESVQDDRELQAWVREIFSKG 519          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LX12B_HUMAN (Arachidonate 12-lipoxygenase, 12R type OS=Homo sapiens GN=ALOX12B PE=1 SV=1)

HSP 1 Score: 125.176 bits (313), Expect = 3.271e-28
Identity = 73/211 (34.60%), Postives = 110/211 (52.13%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEI 638
            G + PIAI+L++ P    P    +FLPS      W W LAK  V   +   H+ ++H L TH   E + +A  R L + HP+Y+LL PH RYT++IN + R  L+N  G+     S G        V    +  +D   LP D + RG  V+D          +  Y + +D L +W+A++++VT+ + +YYP  + VE D ELQ+W  EI
Sbjct:  349 GKMMPIAIQLSQTPGPDCP----IFLPSDSE---WDWLLAKTWVRYAEFYSHEAIAHLLETHLIAEAFCLALLRNLPMCHPLYKLLIPHTRYTVQINSIGRAVLLNEGGLSAKGMSLGVEGFAGVMVRALSELTYDSLYLPNDFVERG--VQD----------LPGYYYRDDSLAVWNALEKYVTEIITYYYPSDAAVEGDPELQSWVQEI 540          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LX15B_RAT (Arachidonate 15-lipoxygenase B OS=Rattus norvegicus GN=Alox15b PE=2 SV=1)

HSP 1 Score: 119.398 bits (298), Expect = 1.795e-26
Identity = 72/216 (33.33%), Postives = 111/216 (51.39%), Query Frame = 3
Query:    3 AGTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVG 650
            +G L PIAI+L + P    P    +FLPS    + W W LAK  V   +   H+ ++H L  H   E + +AT RQL   HP+++LL PH RYT+ IN LAR+ L+    +++ S   G            +Q  +    LP+D+ +R +              +  Y + +DG+ +W AI+ +V++ V+ YYP  + V  D+ELQAW  EI + G
Sbjct:  324 SGPLLPIAIQLKQTPGPDNP----IFLPS---DDKWDWLLAKTWVRNAEFSIHEALTHLLHAHLIPEVFALATLRQLPHCHPLFKLLIPHTRYTLHINTLARELLIAPGKVVDKSTGLGIGGFSDLIKRNMEQLSYSVLCLPEDIRARDVG------------DLPGYYYRDDGMQIWSAIRSFVSEIVDIYYPSDASVRDDQELQAWVGEIFSEG 520          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LX12E_MOUSE (Arachidonate 12-lipoxygenase, epidermal-type OS=Mus musculus GN=Alox12e PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 83/215 (38.60%), Postives = 106/215 (49.30%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVG 650
            G L P+ I+L +PP +G P    +FLPS        W LAK  V + D   HQL SH LR H   E   +AT R L  +HPIY+LL PHFRYTMEIN LAR  LV+  GI +   S G                +     P DL  RGL         G+K ++    +A D L LW+ I ++V   V  +Y   + V+ D ELQ W  E+  VG
Sbjct:  309 GRLLPMVIQL-QPPRHGCPP-PLLFLPS---DPPMAWLLAKIWVRSSDFQLHQLQSHLLRGHLMAEVISVATMRSLPSLHPIYKLLAPHFRYTMEINTLARNNLVSEWGIFDLVVSTGSGGHVDILQRATSCLTYRSFCPPDDLADRGLV--------GVKSSL----YAQDALRLWEIISRYVERMVELFYRSDTDVKEDPELQVWCREVTEVG 506          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LX12B_RAT (Arachidonate 12-lipoxygenase, 12R type OS=Rattus norvegicus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 70/211 (33.18%), Postives = 108/211 (51.18%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEI 638
            G + PIAI+L++ P    P    +FLP+      W W LAK  V   +   H+ V+H L +H   E + +A  R L + HP+Y+LL PH RY ++IN + R  L+N  G+   + S G        V    +  +    +P D + RG  V+D          +  Y F +D L +W A++++VT+ + +YYP+ + VE D ELQ W  EI
Sbjct:  349 GNMMPIAIQLSQTPGPDCP----IFLPNDSE---WDWLLAKTWVRYAEFYSHEAVAHLLESHLIGEAFCLALLRNLPMCHPLYKLLIPHTRYNVQINSIGRALLLNKGGLSARAMSLGLEGFAQVMVRGLSELTYKSLCIPNDFVERG--VQD----------LPGYYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEI 540          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LX12B_MOUSE (Arachidonate 12-lipoxygenase, 12R type OS=Mus musculus GN=Alox12b PE=2 SV=1)

HSP 1 Score: 116.316 bits (290), Expect = 1.519e-25
Identity = 70/211 (33.18%), Postives = 108/211 (51.18%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEI 638
            G + PIAI+L++ P    P    +FLP+      W W LAK  V   +   H+ V+H L +H   E + +A  R L + HP+Y+LL PH RY ++IN + R  L+N  G+   + S G        V    +  +    +P D + RG  V+D          +  Y F +D L +W A++++VT+ + +YYP+ + VE D ELQ W  EI
Sbjct:  349 GNMMPIAIQLSQTPGPDCP----IFLPNDSE---WDWLLAKTWVRYAEFYSHEAVAHLLESHLIGEAFCLALLRNLPMCHPLYKLLIPHTRYNVQINSIGRALLLNKGGLSARAMSLGLEGFAQVMVRGLSELTYKSLCIPNDFVERG--VQD----------LPGYYFRDDSLAVWYAMERYVTEIITYYYPNDAAVEGDPELQCWVQEI 540          
The following BLAST results are available for this feature:
BLAST of CX295644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX2_ORYSJ1.358e-6651.06Lipoxygenase 2 OS=Oryza sativa subsp. japonica GN=... [more]
LOXE3_MOUSE3.495e-3036.32Epidermis-type lipoxygenase 3 OS=Mus musculus GN=A... [more]
LOXE3_HUMAN3.495e-3035.55Epidermis-type lipoxygenase 3 OS=Homo sapiens GN=A... [more]
LX15B_MOUSE1.328e-2937.50Arachidonate 15-lipoxygenase B OS=Mus musculus GN=... [more]
LX15B_HUMAN3.271e-2834.42Arachidonate 15-lipoxygenase B OS=Homo sapiens GN=... [more]
LX12B_HUMAN3.271e-2834.60Arachidonate 12-lipoxygenase, 12R type OS=Homo sap... [more]
LX15B_RAT1.795e-2633.33Arachidonate 15-lipoxygenase B OS=Rattus norvegicu... [more]
LX12E_MOUSE1.519e-2538.60Arachidonate 12-lipoxygenase, epidermal-type OS=Mu... [more]
LX12B_RAT1.519e-2533.18Arachidonate 12-lipoxygenase, 12R type OS=Rattus n... [more]
LX12B_MOUSE1.519e-2533.18Arachidonate 12-lipoxygenase, 12R type OS=Mus musc... [more]

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Properties
Property NameValue
Genbank descriptionC05074D05SK DroRLeaf1 Citrus clementina cDNA clone C05074D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295644 ID=CX295644; Name=CX295644; organism=Citrus clementina; type=EST; length=686bp
CAGCCGGCACATTGAGACCAATAGCTATTGAGCTCACTCGGCCTCCAATG
AATGGCAAGCCACAATGGAAACAAGTGTTTTTACCTTCTTGGCACTCTAC
TGAGTGCTGGCTTTGGAAGCTAGCCAAAGCTCATGTCCTTGCTCATGATG
CTGGCTATCACCAGCTTGTCAGCCATTGGTTAAGAACTCATTGTTGCACA
GAACCTTACGTAATAGCAACCAATCGGCAACTCAGCGTGATGCATCCAAT
CTATAGATTGTTGGATCCTCATTTTCGATACACAATGGAGATCAATGGTT
TGGCTCGACAAGCTCTTGTTAATGCTGATGGAATCATTGAAAGCTCATTC
TCACCTGGAAAGTACTCTATGGAATTCAGCTCTGTTGCCTATGACAAGCA
ATGGCGCTTTGACCATGAAGCACTCCCCAAAGACCTAATTAGCCGGGGAT
TGGCTGTTGAAGATCCAAGTGCTCCACATGGCTTGAAGCTAACAATTGAA
GACTATCCTTTTGCCAATGATGGCCTTGATCTCTGGGATGCCATAAAACA
ATGGGTTACCGATTATGTTAATCACTACTACCCTGATAAAAGCCTTGTAG
AATCTGATGAAGAGCTCCAAGCTTGGTGGACTGAAATTCGAACTGTGGGA
CACGGTGACAAGAAACATGAACCTTGGTGGCCTGTC
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