CX295644

Overview
NameCX295644
Unique NameCX295644
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig11767 contig Ccv1_Contig11767:1571..2256. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX_PSEAE (Oleic acid lipoxygenase OS=Pseudomonas aeruginosa GN=lox PE=1 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.849e-25
Identity = 64/183 (34.97%), Postives = 100/183 (54.64%), Query Frame = 3
Query:  108 WLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHG 656
            W W++AK  VL  +  YH++  H  +TH  +E + +AT R L+  HP++ LL PHF  T+ +N  A + L+ + G I+  F+      + ++      + F    LP+ L +R   V+DP+A       + DYP+ +DGL +W+AI+QW  DYV  YY     V +D EL AW  E+  +G G
Sbjct:  355 WGWQMAKTVVLVAEENYHEMFVHLAQTHLVSEAFCLATQRTLAPSHPLHVLLAPHFEGTLFVNEGAARILLPSAGFIDVMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARN--VDDPAA-------LPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEV--IGSG 526          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOXA_PSEAE (Arachidonate 15-lipoxygenase OS=Pseudomonas aeruginosa GN=loxA PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 4.888e-24
Identity = 64/183 (34.97%), Postives = 98/183 (53.55%), Query Frame = 3
Query:  108 WLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVGHG 656
            W W++AK  V   +  YH++  H  +TH  +E + +AT R L+  HP++ LL PHF  T+ IN  A + L+ + G I+  F+      + ++      + F    LP+ L +R   V+DP       L + DYP+ +DGL +W+AI+QW  DYV  YY     V +D EL AW  E+  +G G
Sbjct:  355 WGWQMAKTVVQVAEENYHEMFVHLAQTHLVSEAFCLATQRTLAPSHPLHVLLAPHFEGTLFINEGAARILLPSAGFIDVMFAAPIQDTQATAGGNRLGFDFYRGMLPESLKARN--VDDP-------LALPDYPYRDDGLLVWNAIRQWAADYVAVYYASDGDVTADVELAAWVGEV--IGSG 526          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX12_RABIT (Arachidonate 12-lipoxygenase, 12S-type OS=Oryctolagus cuniculus GN=ALOX12 PE=2 SV=3)

HSP 1 Score: 108.612 bits (270), Expect = 3.168e-23
Identity = 73/215 (33.95%), Postives = 100/215 (46.51%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVG 650
            G L P+ I+L  P +   P    +FLP+       +W LAK  V + D   H+L SH LR H   E + +AT R L  +HP+++L+ PH RYT+EIN  AR  LV+  GI +   S G                +     P DL  RGL            L +E   +A D L LW+ I ++V   +  YY     V  D ELQ+W  EI  +G
Sbjct:  310 GKLMPMVIQLHLPKIGSSPP--PLFLPT---DPPMVWLLAKCWVRSSDLQVHELNSHLLRGHLMAEVFTVATMRCLPSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTGGGGHVQLLQQAGAFLTYRSFCPPDDLADRGL------------LGVESSFYAQDALRLWEIISRYVQGIMGLYYKTDEAVRDDLELQSWCREITEIG 507          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX15_RABIT (Arachidonate 15-lipoxygenase OS=Oryctolagus cuniculus GN=ALOX15 PE=1 SV=3)

HSP 1 Score: 108.227 bits (269), Expect = 4.138e-23
Identity = 73/215 (33.95%), Postives = 100/215 (46.51%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVG 650
            G L P+ I+L  P +   P    +FLP+       +W LAK  V + D   H+L SH LR H   E + +AT R L  +HP+++L+ PH RYT+EIN  AR  LV+  GI +   S G                +     P DL  RGL            L +E   +A D L LW+ I ++V   +  YY     V  D ELQ+W  EI  +G
Sbjct:  310 GKLMPMVIQLHLPKIGSSPP--PLFLPT---DPPMVWLLAKCWVRSSDFQVHELNSHLLRGHLMAEVFTVATMRCLPSIHPVFKLIVPHLRYTLEINVRARNGLVSDFGIFDQIMSTGGGGHVQLLQQAGAFLTYRSFCPPDDLADRGL------------LGVESSFYAQDALRLWEIISRYVQGIMGLYYKTDEAVRDDLELQSWCREITEIG 507          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX12_PIG (Arachidonate 12-lipoxygenase, 12S-type OS=Sus scrofa GN=ALOX12 PE=1 SV=2)

HSP 1 Score: 107.842 bits (268), Expect = 5.404e-23
Identity = 78/215 (36.28%), Postives = 102/215 (47.44%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVG 650
            G L P+ I+L + P  G P    +FLP+       +W LAK  V + D   H+L SH LR H   E   +AT R L  +HPI++LL PHFRYTMEIN  AR  LV+  GI +   S G                +     P DL  RGL            L +E   +A D L LW+ I ++V   V+ +Y     V+ D ELQAW  E   +G
Sbjct:  310 GKLLPMVIQL-QLPREGSPL-PPLFLPT---DPPMVWLLAKCWVRSSDFQLHELHSHLLRGHLMAEVIAVATMRCLPSIHPIFKLLIPHFRYTMEINVRARNGLVSDLGIFDQVVSTGGGGHVELLRRAAALLTYSSFCPPDDLADRGL------------LGVESSFYAQDALRLWEVISRYVEGIVSLHYKTDESVKEDFELQAWCREFTEIG 507          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX12_HUMAN (Arachidonate 12-lipoxygenase, 12S-type OS=Homo sapiens GN=ALOX12 PE=1 SV=4)

HSP 1 Score: 106.686 bits (265), Expect = 1.204e-22
Identity = 75/215 (34.88%), Postives = 103/215 (47.91%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVG 650
            G L+P+ I++ +PP    P    +FLPS        W LAK+ V   D   H++  H L TH   E   +AT R L  +HPI++ L PH RYTMEIN  AR  L++  GI + + S G             Q  +     P DL  RGL            L +    +A+D L LW+ I ++V   V+ +Y    +V+ D ELQAW  EI  VG
Sbjct:  309 GKLQPMVIQI-QPPNPSSPT-PTLFLPS---DPPLAWLLAKSWVRNSDFQLHEIQYHLLNTHLVAEVIAVATMRCLPGLHPIFKFLIPHIRYTMEINTRARTQLISDGGIFDKAVSTGGGGHVQLLRRAAAQLTYCSLCPPDDLADRGL------------LGLPGALYAHDALRLWEIIARYVEGIVHLFYQRDDIVKGDPELQAWCREITEVG 506          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: AOSL_PLEHO (Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla PE=1 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.572e-22
Identity = 65/215 (30.23%), Postives = 107/215 (49.77%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVG 650
            G L PIAI++ + P    P W        H      W +AK  +   ++ +HQL +H LRTH  TE + ++T R L+  HP+++LL PH    + I+ + R+ L+ + GI++ S S G            K+       LP  L  RG  V+DPS   G       + + +DGL LW+AI+ ++ + +  +Y +   V+ D E+Q+W  ++   G
Sbjct:  707 GHLMPIAIQINQEPGPENPIWTP------HEENEHDWMMAKFWLGVAESNFHQLNTHLLRTHLTTESFALSTWRNLASAHPVFKLLQPHIYGVLAIDTIGRKELIGSGGIVDQSLSLGGGGHVTFMEKCFKEVNLQDYHLPNALKKRG--VDDPSKLPG-------FYYRDDGLALWEAIETFIGEIIAIFYKNDDDVKRDNEIQSWIYDVHKNG 906          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LX12L_RAT (Arachidonate 12-lipoxygenase, leukocyte-type OS=Rattus norvegicus GN=Alox12l PE=2 SV=2)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 73/215 (33.95%), Postives = 98/215 (45.58%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVG 650
            G L PIAI+L  P     P    +F PS    +   W LAK  V + D   H+L +H LR H   E + +AT R L  +HP+++LL PH  YTMEIN  AR  L++  G  + + S G                +     P DL  RGL            L IE   +A D L LW  + ++V    N +Y     V+ D ELQ+W  EI  +G
Sbjct:  310 GQLLPIAIQLELPKTGSTPP--PIFTPSDPPMD---WLLAKCWVRSSDLQLHELQAHLLRGHLMAELFAVATMRCLPSVHPVFKLLVPHLLYTMEINVRARSDLISERGFFDKAMSTGGGGHLDLLKQAGAFLTYCSLCPPDDLAERGL------------LDIETCFYAKDALRLWQIMNRYVVGMFNLHYKTDKAVQDDYELQSWCREITDIG 507          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX12_MOUSE (Arachidonate 12-lipoxygenase, 12S-type OS=Mus musculus GN=Alox12 PE=1 SV=4)

HSP 1 Score: 105.916 bits (263), Expect = 2.054e-22
Identity = 76/215 (35.35%), Postives = 99/215 (46.05%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVG 650
            G L P+AI++ +PP    P    +FLPS        W LAK  V   D    +L  H L TH   E   +AT R L  +HPI++LL PH RYTMEIN  +R  L++  GI +   S G             Q  +     P DL +RGL            L I    +A D L LW+   ++V   V+ +Y    +V  D ELQAW  EI  VG
Sbjct:  309 GKLLPMAIQI-QPPNPSSPA-PTLFLPS---DPPLAWLLAKIWVRNSDFQLQELQFHLLNTHLVAEVIAVATMRCLPGLHPIFKLLVPHIRYTMEINTRSRTQLISDGGIFDQVVSTGGGGHVQLLTRAVAQLTYHSLCPPDDLANRGL------------LRIPSALYARDALQLWEVTARYVKGMVHLFYQSDDIVRGDPELQAWCREITEVG 506          
BLAST of CX295644 vs. ExPASy Swiss-Prot
Match: LOX15_PONAB (Arachidonate 15-lipoxygenase OS=Pongo abelii GN=ALOX15 PE=2 SV=3)

HSP 1 Score: 104.76 bits (260), Expect = 4.575e-22
Identity = 74/215 (34.42%), Postives = 99/215 (46.05%), Query Frame = 3
Query:    6 GTLRPIAIELTRPPMNGKPQWKQVFLPSWHSTECWLWKLAKAHVLAHDAGYHQLVSHWLRTHCCTEPYVIATNRQLSVMHPIYRLLDPHFRYTMEINGLARQALVNADGIIESSFSPGKYSMEFSSVAYDKQWRFDHEALPKDLISRGLAVEDPSAPHGLKLTIEDYPFANDGLDLWDAIKQWVTDYVNHYYPDKSLVESDEELQAWWTEIRTVG 650
            G L P+ I+L  P     P    +FLP+        W LAK  V + D   H+L SH LR H   E  V+AT R L  +HPI++L+ PH RYT+EIN  AR  LV+  GI +   S G                +     P DL  RGL            L ++   +A D L LW+ I ++V   V+ +Y     V+ D ELQ W  EI  +G
Sbjct:  309 GKLLPMVIQLQLPSTGSPPP--PLFLPT---DPPMAWLLAKCWVRSSDFQLHELQSHLLRGHLMAEVIVVATMRCLPSIHPIFKLIIPHLRYTLEINVRARTGLVSDMGIFDQIMSTGGGGHVQLLKQAGAFLTYSSFCPPDDLADRGL------------LGVKSSFYAQDALRLWEIIYRYVEGIVSLHYKTDVAVKDDPELQTWCREITEIG 506          
The following BLAST results are available for this feature:
BLAST of CX295644 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 57
Match NameE-valueIdentityDescription
LOX_PSEAE9.849e-2534.97Oleic acid lipoxygenase OS=Pseudomonas aeruginosa ... [more]
LOXA_PSEAE4.888e-2434.97Arachidonate 15-lipoxygenase OS=Pseudomonas aerugi... [more]
LOX12_RABIT3.168e-2333.95Arachidonate 12-lipoxygenase, 12S-type OS=Oryctola... [more]
LOX15_RABIT4.138e-2333.95Arachidonate 15-lipoxygenase OS=Oryctolagus cunicu... [more]
LOX12_PIG5.404e-2336.28Arachidonate 12-lipoxygenase, 12S-type OS=Sus scro... [more]
LOX12_HUMAN1.204e-2234.88Arachidonate 12-lipoxygenase, 12S-type OS=Homo sap... [more]
AOSL_PLEHO1.572e-2230.23Allene oxide synthase-lipoxygenase protein OS=Plex... [more]
LX12L_RAT2.054e-2233.95Arachidonate 12-lipoxygenase, leukocyte-type OS=Ra... [more]
LOX12_MOUSE2.054e-2235.35Arachidonate 12-lipoxygenase, 12S-type OS=Mus musc... [more]
LOX15_PONAB4.575e-2234.42Arachidonate 15-lipoxygenase OS=Pongo abelii GN=AL... [more]

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Properties
Property NameValue
Genbank descriptionC05074D05SK DroRLeaf1 Citrus clementina cDNA clone C05074D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295644 ID=CX295644; Name=CX295644; organism=Citrus clementina; type=EST; length=686bp
CAGCCGGCACATTGAGACCAATAGCTATTGAGCTCACTCGGCCTCCAATG
AATGGCAAGCCACAATGGAAACAAGTGTTTTTACCTTCTTGGCACTCTAC
TGAGTGCTGGCTTTGGAAGCTAGCCAAAGCTCATGTCCTTGCTCATGATG
CTGGCTATCACCAGCTTGTCAGCCATTGGTTAAGAACTCATTGTTGCACA
GAACCTTACGTAATAGCAACCAATCGGCAACTCAGCGTGATGCATCCAAT
CTATAGATTGTTGGATCCTCATTTTCGATACACAATGGAGATCAATGGTT
TGGCTCGACAAGCTCTTGTTAATGCTGATGGAATCATTGAAAGCTCATTC
TCACCTGGAAAGTACTCTATGGAATTCAGCTCTGTTGCCTATGACAAGCA
ATGGCGCTTTGACCATGAAGCACTCCCCAAAGACCTAATTAGCCGGGGAT
TGGCTGTTGAAGATCCAAGTGCTCCACATGGCTTGAAGCTAACAATTGAA
GACTATCCTTTTGCCAATGATGGCCTTGATCTCTGGGATGCCATAAAACA
ATGGGTTACCGATTATGTTAATCACTACTACCCTGATAAAAGCCTTGTAG
AATCTGATGAAGAGCTCCAAGCTTGGTGGACTGAAATTCGAACTGTGGGA
CACGGTGACAAGAAACATGAACCTTGGTGGCCTGTC
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