CX295655

Overview
NameCX295655
Unique NameCX295655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig4352 contig Ccv1_Contig4352:300..955. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_MAIZE (S-adenosylmethionine decarboxylase proenzyme OS=Zea mays GN=SAMDC PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.035e-37
Identity = 77/128 (60.16%), Postives = 94/128 (73.44%), Query Frame = 3
Query:  303 VSAIGFEGYEKRLEISFFEPSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLSLNVRSVRYTRGSFIFPGNQLYPHRNFS 686
            VSAIGFEGYEKRLEI+F E  +FVDP G+GLR L++AQ+D +L  A CTIVS LSN + DSYVLSESSLF+Y  KI+IKTCG              AE LS+ + +V+Y+RG+FIFPG Q  PHR+FS
Sbjct:   12 VSAIGFEGYEKRLEITFSEAPVFVDPHGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYPLKIVIKTCGTTKLLLTIPRILELAEELSMPLAAVKYSRGTFIFPGAQPAPHRSFS 139          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_HORCH (S-adenosylmethionine decarboxylase proenzyme OS=Hordeum chilense GN=SAMDC PE=2 SV=1)

HSP 1 Score: 154.451 bits (389), Expect = 5.035e-37
Identity = 78/128 (60.94%), Postives = 93/128 (72.66%), Query Frame = 3
Query:  303 VSAIGFEGYEKRLEISFFEPSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLSLNVRSVRYTRGSFIFPGNQLYPHRNFS 686
            VSAIGFEGYEKRLEI+F E SIF DP G+GLR L++AQ+D +L  A CTIVS LSN + DSYVLSESSLF+YS KI+IKTCG              AE L + + +V+Y+RG FIFPG Q  PHR+FS
Sbjct:    5 VSAIGFEGYEKRLEITFSEASIFADPHGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSQKIVIKTCGTTMLLLTIPRILELAEELCMPLAAVKYSRGMFIFPGAQPAPHRSFS 132          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSJ (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. japonica GN=SAMDC PE=2 SV=1)

HSP 1 Score: 151.369 bits (381), Expect = 4.262e-36
Identity = 76/128 (59.38%), Postives = 93/128 (72.66%), Query Frame = 3
Query:  303 VSAIGFEGYEKRLEISFFEPSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLSLNVRSVRYTRGSFIFPGNQLYPHRNFS 686
            VSAIGFEGYEKRLEI+F E  +F DP+G+GLR L++AQ+D +L  A CTIVS LSN + DSYVLSESSLF+YS KI+IKTCG              AE LS+ + +V+Y+RG FIFP  Q  PHR+FS
Sbjct:   12 VSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRILELAEGLSMPLAAVKYSRGMFIFPSAQPAPHRSFS 139          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_ORYSI (S-adenosylmethionine decarboxylase proenzyme OS=Oryza sativa subsp. indica GN=SAMDC PE=2 SV=2)

HSP 1 Score: 151.369 bits (381), Expect = 4.262e-36
Identity = 76/128 (59.38%), Postives = 93/128 (72.66%), Query Frame = 3
Query:  303 VSAIGFEGYEKRLEISFFEPSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLSLNVRSVRYTRGSFIFPGNQLYPHRNFS 686
            VSAIGFEGYEKRLEI+F E  +F DP+G+GLR L++AQ+D +L  A CTIVS LSN + DSYVLSESSLF+YS KI+IKTCG              AE LS+ + +V+Y+RG FIFP  Q  PHR+FS
Sbjct:   12 VSAIGFEGYEKRLEITFSEAPVFADPDGRGLRALSRAQIDSVLDLARCTIVSELSNKDFDSYVLSESSLFIYSDKIVIKTCGTTKLLLTIPRILELAEGLSMPLAAVKYSRGMFIFPSAQPAPHRSFS 139          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_DICDI (S-adenosylmethionine decarboxylase proenzyme OS=Dictyostelium discoideum GN=amd1 PE=3 SV=3)

HSP 1 Score: 90.5077 bits (223), Expect = 8.929e-18
Identity = 53/130 (40.77%), Postives = 69/130 (53.08%), Query Frame = 3
Query:  315 GFEGYEKRLEISFFE------PSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLSLNVRSVRYTRGSFIFPGNQLYPHRNFS 686
            GFEG EK+L+I F         SI   P   GLR + K +   +L  A CTI+S  SND +DSYVLSESSLFVY  + +IKTCG               +   L V  V ++R +   P  Q++PH +FS
Sbjct:   28 GFEGPEKKLDIRFGPISKGSVKSIAGSPSKVGLRTIDKEKWQTVLDSARCTIISQTSNDHMDSYVLSESSLFVYPRRAMIKTCGTTTLLHLIAKMVQVGKECGLEVEMVVFSRKNLNQPSKQVFPHCSFS 157          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_SCHPO (S-adenosylmethionine decarboxylase proenzyme OS=Schizosaccharomyces pombe GN=spe2 PE=2 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 1.576e-14
Identity = 45/128 (35.16%), Postives = 78/128 (60.94%), Query Frame = 3
Query:  318 FEGYEKRLEISFFEPSIFVDPEGK----GLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLSLNVRSVR--YTRGSFIFPGNQLYPHRNF 683
            FEG EK LE+ F  P       G+    GL+ +++   D++L  A+C ++S ++++E+D+Y+LSESS+FV+++KII+KTCG              A ++  + R +R  Y+R +F++P  QL PH ++
Sbjct:   20 FEGPEKLLELWFSAPIKTNLSAGEKANLGLKAVSRNDWDDMLAQAQCKVLSVVNSEEIDAYLLSESSMFVFAHKIILKTCGTTTLLASLPRLLEIASSVGFD-RPLRIFYSRKNFLYPERQLAPHTSW 146          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_RAT (S-adenosylmethionine decarboxylase proenzyme OS=Rattus norvegicus GN=Amd1 PE=2 SV=3)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  318 FEGYEKRLEISFFEPSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLS--LNVRSVRYTRGSFIFPGNQLYPHRNF 683
            FEG EK LE+ F             LR + +++ D +L   +C+I+S    D+ ++YVLSESS+FV   + I+KTCG              A   S   +++S  Y+R +F+ P +Q YPHRNF
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNF 130          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_MESAU (S-adenosylmethionine decarboxylase proenzyme OS=Mesocricetus auratus GN=AMD1 PE=2 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  318 FEGYEKRLEISFFEPSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLS--LNVRSVRYTRGSFIFPGNQLYPHRNF 683
            FEG EK LE+ F             LR + +++ D +L   +C+I+S    D+ ++YVLSESS+FV   + I+KTCG              A   S   +++S  Y+R +F+ P +Q YPHRNF
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNF 130          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM2_MUSSP (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus spretus GN=Amd2 PE=3 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  318 FEGYEKRLEISFFEPSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLS--LNVRSVRYTRGSFIFPGNQLYPHRNF 683
            FEG EK LE+ F             LR + +++ D +L   +C+I+S    D+ ++YVLSESS+FV   + I+KTCG              A   S   +++S  Y+R +F+ P +Q YPHRNF
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNF 130          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM2_MOUSE (S-adenosylmethionine decarboxylase proenzyme 2 OS=Mus musculus GN=Amd2 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  318 FEGYEKRLEISFFEPSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLS--LNVRSVRYTRGSFIFPGNQLYPHRNF 683
            FEG EK LE+ F             LR + +++ D +L   +C+I+S    D+ ++YVLSESS+FV   + I+KTCG              A   S   +++S  Y+R +F+ P +Q YPHRNF
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSIFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNF 130          
The following BLAST results are available for this feature:
BLAST of CX295655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DCAM_MAIZE5.035e-3760.16S-adenosylmethionine decarboxylase proenzyme OS=Ze... [more]
DCAM_HORCH5.035e-3760.94S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_ORYSJ4.262e-3659.38S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_ORYSI4.262e-3659.38S-adenosylmethionine decarboxylase proenzyme OS=Or... [more]
DCAM_DICDI8.929e-1840.77S-adenosylmethionine decarboxylase proenzyme OS=Di... [more]
DCAM_SCHPO1.576e-1435.16S-adenosylmethionine decarboxylase proenzyme OS=Sc... [more]
DCAM_RAT1.022e-1335.48S-adenosylmethionine decarboxylase proenzyme OS=Ra... [more]
DCAM_MESAU1.022e-1335.48S-adenosylmethionine decarboxylase proenzyme OS=Me... [more]
DCAM2_MUSSP1.022e-1335.48S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]
DCAM2_MOUSE1.022e-1335.48S-adenosylmethionine decarboxylase proenzyme 2 OS=... [more]

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Properties
Property NameValue
Genbank descriptionC05074E04SK DroRLeaf1 Citrus clementina cDNA clone C05074E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295655 ID=CX295655; Name=CX295655; organism=Citrus clementina; type=EST; length=686bp
GTTAACATTCTTGTTCTTCATTGTCTTCTGCAGTGCGCACGCAAGCCATC
CTGATATTCTCAAAGTCTGCAATCAGATCACATAGCGTGATCCATCAACT
GTTAGTTTCCTGTAGTTAGTTATATTAGGTTTACTCCCCTTTTGTAGATC
AACATCTTCCTCTCTCTTTCTCTCTCTTCGCGATTGTGGTTATTGCTTCT
GCAGTCTCTCTTCTACTGTCATCATCCCTGCTGCTTCTGGTTTCTCTGCA
ATCTTAAAGTTAGATTTCAGCTGCAATGGTTTCTGCTGATACCACCATGG
CAGTCTCTGCAATTGGTTTTGAAGGTTATGAAAAGAGGCTGGAGATATCA
TTTTTTGAACCCAGCATCTTTGTTGATCCTGAAGGAAAGGGCCTTAGGCG
CCTGACCAAGGCCCAGCTGGATGAGATTTTAGGACCAGCTGAATGCACTA
TTGTCTCTTCACTGTCAAATGATGAAGTTGACTCCTATGTCCTATCCGAG
TCTAGCCTCTTTGTTTACTCTTACAAGATCATCATCAAAACTTGTGGGAC
TACAAAGTTGCTTCTTTCAATCCCACCCATCCTGAAACTGGCTGAGACCC
TTTCTCTCAATGTACGATCAGTGAGGTATACACGTGGGAGTTTCATTTTC
CCTGGGAATCAGCTATACCCTCATCGCAACTTTTCT
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