CX295655

Overview
NameCX295655
Unique NameCX295655
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length686
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM1_MOUSE (S-adenosylmethionine decarboxylase proenzyme 1 OS=Mus musculus GN=Amd1 PE=1 SV=1)

HSP 1 Score: 77.0258 bits (188), Expect = 1.022e-13
Identity = 44/124 (35.48%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  318 FEGYEKRLEISFFEPSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLS--LNVRSVRYTRGSFIFPGNQLYPHRNF 683
            FEG EK LE+ F             LR + +++ D +L   +C+I+S    D+ ++YVLSESS+FV   + I+KTCG              A   S   +++S  Y+R +F+ P +Q YPHRNF
Sbjct:    7 FEGTEKLLEVWFSRQQSDASQGSGDLRTIPRSEWDVLLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNF 130          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_ONCVO (S-adenosylmethionine decarboxylase proenzyme OS=Onchocerca volvulus GN=smd-1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 52/137 (37.96%), Postives = 72/137 (52.55%), Query Frame = 3
Query:  288 DTTMAVSAIGFEGYEKRLEISFFEPSIFVDPEGKG---LRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLSL--NVRSVRYTRGSFIFPGNQLYPHRNF 683
            D +  +    FEG EK LEI F       D    G   LR +  ++L  +L  A+C I+ S SN+ +DSYVLSESS+F+  ++II+KTCG              A+      NV SV Y+R +F+ P  Q YPH +F
Sbjct:   20 DVSGVIEDYFFEGAEKLLEIWF-------DKNQNGATSLRNIPYSELVSMLDIAQCRILHSKSNECMDSYVLSESSMFISDFRIILKTCGTTRLLHAIERILHIAKIYCNMDNVVSVFYSRKNFMHPEKQPYPHSSF 149          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_HUMAN (S-adenosylmethionine decarboxylase proenzyme OS=Homo sapiens GN=AMD1 PE=1 SV=2)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  318 FEGYEKRLEISFFEPSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLS--LNVRSVRYTRGSFIFPGNQLYPHRNF 683
            FEG EK LE+ F       +     LR + +++ D +L   +C+I+S    D+ ++YVLSESS+FV   + I+KTCG              A   S   +++S  Y+R +F+ P +Q YPHRNF
Sbjct:    7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNF 130          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_BOVIN (S-adenosylmethionine decarboxylase proenzyme OS=Bos taurus GN=AMD1 PE=1 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 1.334e-13
Identity = 44/124 (35.48%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  318 FEGYEKRLEISFFEPSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLS--LNVRSVRYTRGSFIFPGNQLYPHRNF 683
            FEG EK LE+ F       +     LR + +++ D +L   +C+I+S    D+ ++YVLSESS+FV   + I+KTCG              A   S   +++S  Y+R +F+ P +Q YPHRNF
Sbjct:    7 FEGTEKLLEVWFSRQQPDANQGSGDLRTIPRSEWDILLKDVQCSIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLKALVPLLKLARDYSGFDSIQSFFYSRKNFMKPSHQGYPHRNF 130          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_DROME (S-adenosylmethionine decarboxylase proenzyme OS=Drosophila melanogaster GN=SamDC PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.648e-13
Identity = 46/124 (37.10%), Postives = 66/124 (53.23%), Query Frame = 3
Query:  318 FEGYEKRLEISFFEPSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLSLN-VRSVRYTRGSFIFPGNQLYPHRNFS 686
            FEG EK LEI F E S   D     LR ++++  + +L    C I+S+  ND +D++VLSESS+FV   + I+KTCG              AE    N V  + Y+R +F  P  Q+ PH+ F+
Sbjct:    9 FEGVEKLLEIWFEESSNGDDD----LRNISRSDWENVLSNVNCQIISTSKNDIIDAFVLSESSMFVSKRRWILKTCGTTTPLKCLGQLLKLAEANGYNVVADLFYSRKNFTRPEAQITPHQGFT 128          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_CAEEL (S-adenosylmethionine decarboxylase proenzyme OS=Caenorhabditis elegans GN=smd-1 PE=2 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.475e-12
Identity = 46/124 (37.10%), Postives = 67/124 (54.03%), Query Frame = 3
Query:  318 FEGYEKRLEISFFEPSIFVDPEGKGLRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLS--LNVRSVRYTRGSFIFPGNQLYPHRNF 683
            FEG EK LE+ F   +     E + LR + + ++D +L  A C I+ S  N+ +DSYVLSESSLF+   ++I+KTCG              A   +    V+SV Y+R +F+ P  Q   H+NF
Sbjct:   25 FEGAEKLLELWFCSST---QNETRSLRIIPREEIDAMLDIARCKILHSKHNESIDSYVLSESSLFISDNRVILKTCGTTRLLAALPVIMQLAGAYAGLDQVQSVYYSRKNFLRPDLQPSLHKNF 145          
BLAST of CX295655 vs. ExPASy Swiss-Prot
Match: DCAM_XENLA (S-adenosylmethionine decarboxylase proenzyme OS=Xenopus laevis GN=amd1 PE=2 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.562e-12
Identity = 44/125 (35.20%), Postives = 66/125 (52.80%), Query Frame = 3
Query:  318 FEGYEKRLEISFFEPSIFVDPEGKG-LRRLTKAQLDEILGPAECTIVSSLSNDEVDSYVLSESSLFVYSYKIIIKTCGXXXXXXXXXXXXXXAETLS--LNVRSVRYTRGSFIFPGNQLYPHRNF 683
            FEG EK LE+ F +       +G G LR + + + D++L    C I+S    D+ ++YVLSESS+FV   + I+KTCG              A        +++  Y+R +F+ P +Q YPHRNF
Sbjct:   11 FEGTEKLLELWFSQQDA---SKGSGDLRDIPRFEWDKLLENVHCLIISVTKTDKQEAYVLSESSMFVSKRRFILKTCGTTLLLQALVPLLELAREYCGFDGIQNFFYSRKNFMKPNHQEYPHRNF 132          
The following BLAST results are available for this feature:
BLAST of CX295655 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
DCAM1_MOUSE1.022e-1335.48S-adenosylmethionine decarboxylase proenzyme 1 OS=... [more]
DCAM_ONCVO1.334e-1337.96S-adenosylmethionine decarboxylase proenzyme OS=On... [more]
DCAM_HUMAN1.334e-1335.48S-adenosylmethionine decarboxylase proenzyme OS=Ho... [more]
DCAM_BOVIN1.334e-1335.48S-adenosylmethionine decarboxylase proenzyme OS=Bo... [more]
DCAM_DROME8.648e-1337.10S-adenosylmethionine decarboxylase proenzyme OS=Dr... [more]
DCAM_CAEEL1.475e-1237.10S-adenosylmethionine decarboxylase proenzyme OS=Ca... [more]
DCAM_XENLA9.562e-1235.20S-adenosylmethionine decarboxylase proenzyme OS=Xe... [more]

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Properties
Property NameValue
Genbank descriptionC05074E04SK DroRLeaf1 Citrus clementina cDNA clone C05074E04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295655 ID=CX295655; Name=CX295655; organism=Citrus clementina; type=EST; length=686bp
GTTAACATTCTTGTTCTTCATTGTCTTCTGCAGTGCGCACGCAAGCCATC
CTGATATTCTCAAAGTCTGCAATCAGATCACATAGCGTGATCCATCAACT
GTTAGTTTCCTGTAGTTAGTTATATTAGGTTTACTCCCCTTTTGTAGATC
AACATCTTCCTCTCTCTTTCTCTCTCTTCGCGATTGTGGTTATTGCTTCT
GCAGTCTCTCTTCTACTGTCATCATCCCTGCTGCTTCTGGTTTCTCTGCA
ATCTTAAAGTTAGATTTCAGCTGCAATGGTTTCTGCTGATACCACCATGG
CAGTCTCTGCAATTGGTTTTGAAGGTTATGAAAAGAGGCTGGAGATATCA
TTTTTTGAACCCAGCATCTTTGTTGATCCTGAAGGAAAGGGCCTTAGGCG
CCTGACCAAGGCCCAGCTGGATGAGATTTTAGGACCAGCTGAATGCACTA
TTGTCTCTTCACTGTCAAATGATGAAGTTGACTCCTATGTCCTATCCGAG
TCTAGCCTCTTTGTTTACTCTTACAAGATCATCATCAAAACTTGTGGGAC
TACAAAGTTGCTTCTTTCAATCCCACCCATCCTGAAACTGGCTGAGACCC
TTTCTCTCAATGTACGATCAGTGAGGTATACACGTGGGAGTTTCATTTTC
CCTGGGAATCAGCTATACCCTCATCGCAACTTTTCT
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