CX295688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13 Identity = 53/169 (31.36%), Postives = 86/169 (50.89%), Query Frame = 3 Query: 138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617 ++VGN+ V + L +F G +E ++I D+S +GFV A A+ N + G+ + VN A +R + + ++VG++ + DA L FS ARV++D++TGRSRGFGFV+ ++ + AI +L+G+ L R IR N A Sbjct: 138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1) HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13 Identity = 54/165 (32.73%), Postives = 81/165 (49.09%), Query Frame = 3 Query: 132 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLI---------------KKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 578 R+ + N PQ +T L+ +FSS G +E KLI K YGFV+Y + + A AI TLNG + + IKV++A SS+ + N+++ L +T + F F ++RV+ DQ TG SRG F+ F + +A+ AI NG Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDA---NLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3) HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12 Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 3 Query: 180 LQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY-ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575 L +F + GP+ C++++ K+ Y GFVD+ A AI LNG + + IKV++A Q DT N++V +LS +TD L F + ++ D+ TG RG F+ F +E+AQ AI+ LN Sbjct: 94 LYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDT----NLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALN 226
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12 Identity = 50/169 (29.59%), Postives = 89/169 (52.66%), Query Frame = 3 Query: 138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617 ++VGN+ + + L ++F G +E ++I + D+S +GFV A A+ + + G+ + VN A R + + + ++VG++ ++ DA L FS ARV++D+++GRSRGFGFV+ ++ + AI +L+G+ L R IR N A Sbjct: 99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12 Identity = 49/148 (33.11%), Postives = 78/148 (52.70%), Query Frame = 3 Query: 150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGF----VDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575 N PQ +T+ L +F + GP+ C+++K K+ Y F VD+ A AI T+NG + + +KV++A + +DT N++V +L +TD L F + ++ D+ TGR RG FV F +E+AQ AI+ LN Sbjct: 107 NYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIKDT----NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALN 250
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12 Identity = 56/178 (31.46%), Postives = 83/178 (46.63%), Query Frame = 3 Query: 150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIK------------KDKSS---------------------YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581 N PQ +T + +F S G +E CKL++ KD ++ YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T L FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+ Sbjct: 56 NYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 230
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1) HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12 Identity = 56/178 (31.46%), Postives = 83/178 (46.63%), Query Frame = 3 Query: 150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIK------------KDKSS---------------------YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581 N PQ +T + +F S G +E CKL++ KD ++ YGFV+Y D + A AI TLNG + + IKV++A SS + N++V L +T L FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+ Sbjct: 56 NYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 230
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12 Identity = 53/182 (29.12%), Postives = 90/182 (49.45%), Query Frame = 3 Query: 138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA--SSQREDTSGHFN------------VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 629 +YVGN+ +T++ L E+F+ G + +++ D+S + FV A AI +G + G+ +KVN+ +RE S ++V +LS +T L F+ P A+V++D+ +GRSRGFGF++F + E SA++ +N L R +R N A + A Sbjct: 116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKA 297
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12 Identity = 55/205 (26.83%), Postives = 94/205 (45.85%), Query Frame = 3 Query: 69 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 644 +P EP+ NL P + R+V+ + ++ L++ FS+ G + ++I S +V++ + +S LAI L G+ + G PI V + A R + G ++VG L +T+ L F F + +M D TGRS+G+GF++F + E A+ A+ LNG L R +R + G + Sbjct: 149 SPVREPV--DNLSP--EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTD 348
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1) HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12 Identity = 46/176 (26.14%), Postives = 92/176 (52.27%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFN---------VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 620 +++VG + + + L++ F G + G ++I + D+S YG+VD+ ++ A AI + G+ I G+PI + + + + D + F +F+G+LS +F F+ R+ +T + +GFG+V F N EDA+ A++ L G+++ NR +R ++++ Sbjct: 169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSS 344 The following BLAST results are available for this feature:
BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bpback to top |