CX295688

Overview
NameCX295688
Unique NameCX295688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC4_NICSY (31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 6.852e-13
Identity = 53/169 (31.36%), Postives = 86/169 (50.89%), Query Frame = 3
Query:  138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617
            ++VGN+   V +  L  +F   G +E  ++I     D+S  +GFV       A  A+   N   + G+ + VN A    +R +         + ++VG++   + DA L   FS       ARV++D++TGRSRGFGFV+  ++ +   AI +L+G+ L  R IR N A
Sbjct:  138 LFVGNLPYDVDSEGLARLFEQAGVVEIAEVIYNRDTDQSRGFGFVTMSTVEEAEKAVEMYNRYDVNGRLLTVNKAARRGERPERPPRTFEQSYRIYVGNIPWGIDDARLEQLFSEHGKVVSARVVYDRETGRSRGFGFVTMASEAEMSDAIANLDGQSLDGRTIRVNVA 306          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELV1A_XENLA (ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-A PE=1 SV=1)

HSP 1 Score: 73.9442 bits (180), Expect = 8.949e-13
Identity = 54/165 (32.73%), Postives = 81/165 (49.09%), Query Frame = 3
Query:  132 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLI---------------KKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 578
            R+  + N  PQ +T   L+ +FSS G +E  KLI               K     YGFV+Y + + A  AI TLNG  +  + IKV++A  SS+    +   N+++  L   +T   +   F  F    ++RV+ DQ TG SRG  F+ F  + +A+ AI   NG
Sbjct:   19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGFEMRSSSLSKGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSESIKDA---NLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 180          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SXL_MEGSC (Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE=2 SV=3)

HSP 1 Score: 73.559 bits (179), Expect = 1.169e-12
Identity = 46/137 (33.58%), Postives = 71/137 (51.82%), Query Frame = 3
Query:  180 LQEVFSSTGPLEGCKLIKKDKSSY----GFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAY-ASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575
            L  +F + GP+  C++++  K+ Y    GFVD+     A  AI  LNG  +  + IKV++A     Q  DT    N++V +LS  +TD  L   F  +       ++ D+ TG  RG  F+ F  +E+AQ AI+ LN
Sbjct:   94 LYSLFRTIGPINTCRIMRDYKTGYSYGYGFVDFGSEADALRAINNLNGITVRNKRIKVSFARPGGEQLRDT----NLYVTNLSRSITDEQLETIFGKYGQIVQKNILRDKHTGTPRGVAFIRFNKREEAQEAISALN 226          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC3_NICSY (28 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 1.526e-12
Identity = 50/169 (29.59%), Postives = 89/169 (52.66%), Query Frame = 3
Query:  138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLI---KKDKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH-----FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617
            ++VGN+   + +  L ++F   G +E  ++I   + D+S  +GFV       A  A+   +   + G+ + VN A     R + +       + ++VG++  ++ DA L   FS       ARV++D+++GRSRGFGFV+  ++ +   AI +L+G+ L  R IR N A
Sbjct:   99 LFVGNLPYDIDSEGLAQLFQQAGVVEIAEVIYNRETDRSRGFGFVTMSTVEEADKAVELYSQYDLNGRLLTVNKAAPRGSRPERAPRTFQPTYRIYVGNIPWDIDDARLEQVFSEHGKVVSARVVFDRESGRSRGFGFVTMSSEAEMSEAIANLDGQTLDGRTIRVNAA 267          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SXL_MUSDO (Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 49/148 (33.11%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGF----VDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575
            N  PQ +T+  L  +F + GP+  C+++K  K+ Y F    VD+     A  AI T+NG  +  + +KV++A    +  +DT    N++V +L   +TD  L   F  +       ++ D+ TGR RG  FV F  +E+AQ AI+ LN
Sbjct:  107 NYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKTVNGITVRNKRLKVSYARPGGESIKDT----NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGRPRGVAFVRFNKREEAQEAISALN 250          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV4_XENTR (ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 56/178 (31.46%), Postives = 83/178 (46.63%), Query Frame = 3
Query:  150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIK------------KDKSS---------------------YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581
            N  PQ +T    + +F S G +E CKL++            KD ++                     YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++ DQ TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   56 NYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEEHFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 230          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV4_XENLA (ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 1.994e-12
Identity = 56/178 (31.46%), Postives = 83/178 (46.63%), Query Frame = 3
Query:  150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIK------------KDKSS---------------------YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581
            N  PQ +T    + +F S G +E CKL++            KD ++                     YGFV+Y D + A  AI TLNG  +  + IKV++A  SS     +   N++V  L   +T   L   FS +     +R++ DQ TG SRG GF+ F  + +A+ AI  LNG+
Sbjct:   56 NYLPQNMTQEEFRSLFGSIGEIESCKLVRDKITGTQFEENFKDLATGTKWKPLTEEGPIFGKGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 230          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC5_NICSY (33 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 53/182 (29.12%), Postives = 90/182 (49.45%), Query Frame = 3
Query:  138 VYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYA--SSQREDTSGHFN------------VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGA 629
            +YVGN+   +T++ L E+F+  G +   +++     D+S  + FV       A  AI   +G  + G+ +KVN+       +RE  S                ++V +LS  +T   L   F+  P    A+V++D+ +GRSRGFGF++F + E   SA++ +N   L  R +R N A + A
Sbjct:  116 LYVGNLPFSMTSSQLSEIFAEAGTVANVEIVYDRVTDRSRGFAFVTMGSVEEAKEAIRLFDGSQVGGRTVKVNFPEVPRGGEREVMSAKIRSTYQGFVDSPHKLYVANLSWALTSQGLRDAFADQPGFMSAKVIYDRSSGRSRGFGFITFSSAEAMNSALDTMNEVELEGRPLRLNVAGQKA 297          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM23_HUMAN (Probable RNA-binding protein 23 OS=Homo sapiens GN=RBM23 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 55/205 (26.83%), Postives = 94/205 (45.85%), Query Frame = 3
Query:   69 APQIEPILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR---------EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAKGATSGDE 644
            +P  EP+   NL P  +    R+V+   +  ++    L++ FS+ G +   ++I    S       +V++ + +S  LAI  L G+ + G PI V  + A   R         +   G   ++VG L   +T+  L   F  F    +  +M D  TGRS+G+GF++F + E A+ A+  LNG  L  R +R     +    G +
Sbjct:  149 SPVREPV--DNLSP--EERDARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNRLAAMANNLQKGNGGPMRLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERLDGGTD 348          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: NSR1_YEAST (Nuclear localization sequence-binding protein OS=Saccharomyces cerevisiae GN=NSR1 PE=1 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 2.604e-12
Identity = 46/176 (26.14%), Postives = 92/176 (52.27%), Query Frame = 3
Query:  135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK---DKS-SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYAS-SQREDTSGHFN---------VFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 620
            +++VG +   + +  L++ F   G + G ++I +   D+S  YG+VD+ ++  A  AI  + G+ I G+PI  + + +  +   D +  F          +F+G+LS       +F  F+        R+    +T + +GFG+V F N EDA+ A++ L G+++ NR +R ++++
Sbjct:  169 TIFVGRLSWSIDDEWLKKEFEHIGGVIGARVIYERGTDRSRGYGYVDFENKSYAEKAIQEMQGKEIDGRPINCDMSTSKPAGNNDRAKKFGDTPSEPSDTLFLGNLSFNADRDAIFELFAKHGEVVSVRIPTHPETEQPKGFGYVQFSNMEDAKKALDALQGEYIDNRPVRLDFSS 344          
The following BLAST results are available for this feature:
BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
ROC4_NICSY6.852e-1331.3631 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
ELV1A_XENLA8.949e-1332.73ELAV-like protein 1-A OS=Xenopus laevis GN=elavl1-... [more]
SXL_MEGSC1.169e-1233.58Sex-lethal homolog OS=Megaselia scalaris GN=SXL PE... [more]
ROC3_NICSY1.526e-1229.5928 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
SXL_MUSDO1.994e-1233.11Sex-lethal homolog OS=Musca domestica GN=SXL PE=2 ... [more]
ELAV4_XENTR1.994e-1231.46ELAV-like protein 4 OS=Xenopus tropicalis GN=elavl... [more]
ELAV4_XENLA1.994e-1231.46ELAV-like protein 4 OS=Xenopus laevis GN=elavl4 PE... [more]
ROC5_NICSY2.604e-1229.1233 kDa ribonucleoprotein, chloroplastic OS=Nicotia... [more]
RBM23_HUMAN2.604e-1226.83Probable RNA-binding protein 23 OS=Homo sapiens GN... [more]
NSR1_YEAST2.604e-1226.14Nuclear localization sequence-binding protein OS=S... [more]

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Properties
Property NameValue
Genbank descriptionC05074H02SK DroRLeaf1 Citrus clementina cDNA clone C05074H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bp
GAGGGGCTGAAGCACAAACAATGATGCAGCAGCAGTCTTTATACCAATAC
CATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGAAA
TCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAGCGTGTATGTTGGAA
ACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAGAGGTTTTTTCAAGT
ACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAAGATAAGTCATCCTA
TGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGCCCTTGCAATTGTGA
CTCTTAATGGAAGGCACATATTTGGACAACCTATTAAAGTAAACTGGGCT
TATGCTAGCAGCCAGAGAGAGGACACATCAGGTCATTTCAACGTTTTTGT
TGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTTGTTTGCGTGCTTCT
CTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGTGGGACCAAAAGACT
GGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGGAATCAGGAGGATGC
CCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCTTGGTAATAGACAGA
TTCGGTGCAACTGGGCTGCAAAAGGTGCTACCTCTGGTGATGAAAAGCAA
GTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGGATATCTGAAGATGG
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