CX295688

Overview
NameCX295688
Unique NameCX295688
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length700
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 3
Query:  387 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605
            F +F GDL  EV D  L   FS FP+   A+V+ D++TG+++G+GFVSF++  D   A+ ++NGK++G+R I+
Sbjct:  375 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK 447          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 3
Query:  387 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605
            F +F GDL  EV D  L   FS FP+   A+V+ D++TG+++G+GFVSF++  D   A+ ++NGK++G+R I+
Sbjct:  375 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK 447          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 3
Query:  387 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605
            F +F GDL  EV D  L   FS FP+   A+V+ D++TG+++G+GFVSF++  D   A+ ++NGK++G+R I+
Sbjct:  381 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK 453          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 3
Query:  387 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605
            F +F GDL  EV D  L   FS FP+   A+V+ D++TG+++G+GFVSF++  D   A+ ++NGK++G+R I+
Sbjct:  349 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK 421          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12
Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 3
Query:  321 FGQPIKVNWAYASSQRED--TSGHFNVFVGDLSPEVTDATLFACFSV-FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617
            F +  ++NWA  ++ +    ++  F++FVGDLSP  T+A L + F   F +    RVM D  TG SR FGFV F ++++ + A+ +++GKW   R +R  +A
Sbjct:  168 FKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYA 269          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2)

HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12
Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGF----VDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575
            N  PQ +T+  L  +F + GP+  C+++K  K+ Y F    VD+     A  AI +LNG  +  + +KV++A    +  +DT    N++V +L   +TD  L   F  +       ++ D+ TG+ RG  FV F  +E+AQ AI+ LN
Sbjct:   90 NYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIKDT----NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 233          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 45/156 (28.85%), Postives = 81/156 (51.92%), Query Frame = 3
Query:  123 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGF----VDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575
            S+  ++ V  +   +T+  L  +F + GP+  C++++  K+ Y F    VD+     +  AI  LNG  +  + +KV++A    +  +DT    N++V +L   +TD  L   F  + +     ++ D+ TGR RG  FV +  +E+AQ AI+ LN
Sbjct:  124 SSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDT----NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 275          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = 3
Query:  378 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605
            S  F +F GDL  EV D  L   FS +P+   A+V+ D++TG+++G+GFVSF++  D   A+ ++NGK++G+R I+
Sbjct:  290 SDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIK 365          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12
Identity = 35/94 (37.23%), Postives = 59/94 (62.77%), Query Frame = 3
Query:  339 VNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 620
            V+W   S    +T   F +F GDL  EV D  L   FS +P+   A+V+ D++TG+++G+GFVSF++  D   A+ ++NG+++G+R I+   +A
Sbjct:  288 VSWEDTSLLEWETDD-FRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKLRKSA 380          
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12
Identity = 46/148 (31.08%), Postives = 78/148 (52.70%), Query Frame = 3
Query:  150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGF----VDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575
            N  PQ +T+  L  +F + GP+  C++++  K+ Y F    VD+     +  AI  LNG  +  + +KV++A    +  +DT    N++V +L   +TD  L   F  + +     ++ D+ TGR RG  FV +  +E+AQ AI+ LN
Sbjct:  130 NYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDT----NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273          
The following BLAST results are available for this feature:
BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 123
Match NameE-valueIdentityDescription
RBM42_RAT4.441e-1243.84RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm... [more]
RBM42_MOUSE4.441e-1243.84RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE... [more]
RBM42_HUMAN4.441e-1243.84RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE... [more]
RBM42_BOVIN4.441e-1243.84RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2... [more]
NGR1_YEAST4.441e-1236.27Negative growth regulatory protein NGR1 OS=Sacchar... [more]
SXL_CHRRU5.801e-1232.43Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL ... [more]
SXL_DROSU7.576e-1228.85Protein sex-lethal OS=Drosophila subobscura GN=Sxl... [more]
RBM42_XENTR7.576e-1242.11RNA-binding protein 42 OS=Xenopus tropicalis GN=rb... [more]
RBM42_DANRE7.576e-1237.23RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=... [more]
SXL_DROME9.894e-1231.08Protein sex-lethal OS=Drosophila melanogaster GN=S... [more]

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Properties
Property NameValue
Genbank descriptionC05074H02SK DroRLeaf1 Citrus clementina cDNA clone C05074H02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bp
GAGGGGCTGAAGCACAAACAATGATGCAGCAGCAGTCTTTATACCAATAC
CATCCCAGTCTCTTAGCTGCTCCTCAGATAGAGCCTATCTTGAGTGGAAA
TCTGCCTCCGCGATTTGATGCAAGTACATGCCGCAGCGTGTATGTTGGAA
ACATTCATCCTCAGGTTACAAATGCCCTGCTTCAAGAGGTTTTTTCAAGT
ACCGGTCCCCTTGAAGGATGCAAGCTCATTAAAAAAGATAAGTCATCCTA
TGGCTTTGTGGACTACTTTGATCGCAGATCAGCTGCCCTTGCAATTGTGA
CTCTTAATGGAAGGCACATATTTGGACAACCTATTAAAGTAAACTGGGCT
TATGCTAGCAGCCAGAGAGAGGACACATCAGGTCATTTCAACGTTTTTGT
TGGTGATCTTAGCCCTGAAGTTACAGATGCTACTTTGTTTGCGTGCTTCT
CTGTGTTTCCTACTTGTTCGGATGCAAGGGTTATGTGGGACCAAAAGACT
GGGCGTTCAAGGGGTTTTGGGTTTGTTTCTTTTCGGAATCAGGAGGATGC
CCAAAGTGCAATAAATGACTTAAATGGGAAGTGGCTTGGTAATAGACAGA
TTCGGTGCAACTGGGCTGCAAAAGGTGCTACCTCTGGTGATGAAAAGCAA
GTTCAGATTCCAAAGTGTTGTAGAGCTTACAATGGGATATCTGAAGATGG
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