CX295688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM42_RAT (RNA-binding protein 42 OS=Rattus norvegicus GN=Rbm42 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12 Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 3 Query: 387 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605 F +F GDL EV D L FS FP+ A+V+ D++TG+++G+GFVSF++ D A+ ++NGK++G+R I+ Sbjct: 375 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK 447
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM42_MOUSE (RNA-binding protein 42 OS=Mus musculus GN=Rbm42 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12 Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 3 Query: 387 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605 F +F GDL EV D L FS FP+ A+V+ D++TG+++G+GFVSF++ D A+ ++NGK++G+R I+ Sbjct: 375 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK 447
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM42_HUMAN (RNA-binding protein 42 OS=Homo sapiens GN=RBM42 PE=1 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12 Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 3 Query: 387 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605 F +F GDL EV D L FS FP+ A+V+ D++TG+++G+GFVSF++ D A+ ++NGK++G+R I+ Sbjct: 381 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK 453
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM42_BOVIN (RNA-binding protein 42 OS=Bos taurus GN=RBM42 PE=2 SV=1) HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12 Identity = 32/73 (43.84%), Postives = 51/73 (69.86%), Query Frame = 3 Query: 387 FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605 F +F GDL EV D L FS FP+ A+V+ D++TG+++G+GFVSF++ D A+ ++NGK++G+R I+ Sbjct: 349 FRIFCGDLGNEVNDDILARAFSRFPSFLKAKVIRDKRTGKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIK 421
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: NGR1_YEAST (Negative growth regulatory protein NGR1 OS=Saccharomyces cerevisiae GN=NGR1 PE=1 SV=2) HSP 1 Score: 71.633 bits (174), Expect = 4.441e-12 Identity = 37/102 (36.27%), Postives = 61/102 (59.80%), Query Frame = 3 Query: 321 FGQPIKVNWAYASSQRED--TSGHFNVFVGDLSPEVTDATLFACFSV-FPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617 F + ++NWA ++ + ++ F++FVGDLSP T+A L + F F + RVM D TG SR FGFV F ++++ + A+ +++GKW R +R +A Sbjct: 168 FKRTFRLNWASGATLQSSIPSTPEFSLFVGDLSPTATEADLLSLFQTRFKSVKTVRVMTDPLTGSSRCFGFVRFGDEDERRRALIEMSGKWFQGRALRVAYA 269
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SXL_CHRRU (Sex-lethal homolog OS=Chrysomya rufifacies GN=SXL PE=2 SV=2) HSP 1 Score: 71.2478 bits (173), Expect = 5.801e-12 Identity = 48/148 (32.43%), Postives = 78/148 (52.70%), Query Frame = 3 Query: 150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGF----VDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575 N PQ +T+ L +F + GP+ C+++K K+ Y F VD+ A AI +LNG + + +KV++A + +DT N++V +L +TD L F + ++ D+ TG+ RG FV F +E+AQ AI+ LN Sbjct: 90 NYLPQDMTDRELYALFRTCGPINTCRIMKDYKTGYSFGYAFVDFASEIDAQNAIKSLNGVTVRNKRLKVSYARPGGESIKDT----NLYVTNLPRTITDDELEKIFGKYGNIVQKNILRDKLTGKPRGVAFVRFNKREEAQEAISALN 233
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SXL_DROSU (Protein sex-lethal OS=Drosophila subobscura GN=Sxl PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12 Identity = 45/156 (28.85%), Postives = 81/156 (51.92%), Query Frame = 3 Query: 123 STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSSYGF----VDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575 S+ ++ V + +T+ L +F + GP+ C++++ K+ Y F VD+ + AI LNG + + +KV++A + +DT N++V +L +TD L F + + ++ D+ TGR RG FV + +E+AQ AI+ LN Sbjct: 124 SSNTNLIVNYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDT----NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 275
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM42_XENTR (RNA-binding protein 42 OS=Xenopus tropicalis GN=rbm42 PE=2 SV=1) HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12 Identity = 32/76 (42.11%), Postives = 52/76 (68.42%), Query Frame = 3 Query: 378 SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIR 605 S F +F GDL EV D L FS +P+ A+V+ D++TG+++G+GFVSF++ D A+ ++NGK++G+R I+ Sbjct: 290 SDDFRIFCGDLGNEVNDDILARAFSRYPSFLRAKVIRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGKYVGSRPIK 365
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: RBM42_DANRE (RNA-binding protein 42 OS=Danio rerio GN=rbm42 PE=2 SV=2) HSP 1 Score: 70.8626 bits (172), Expect = 7.576e-12 Identity = 35/94 (37.23%), Postives = 59/94 (62.77%), Query Frame = 3 Query: 339 VNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 620 V+W S +T F +F GDL EV D L FS +P+ A+V+ D++TG+++G+GFVSF++ D A+ ++NG+++G+R I+ +A Sbjct: 288 VSWEDTSLLEWETDD-FRIFCGDLGNEVNDDILARAFSRYPSFLKAKVVRDKRTGKTKGYGFVSFKDPNDYVRAMREMNGRYVGSRPIKLRKSA 380
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: SXL_DROME (Protein sex-lethal OS=Drosophila melanogaster GN=Sxl PE=1 SV=1) HSP 1 Score: 70.4774 bits (171), Expect = 9.894e-12 Identity = 46/148 (31.08%), Postives = 78/148 (52.70%), Query Frame = 3 Query: 150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSSYGF----VDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLN 575 N PQ +T+ L +F + GP+ C++++ K+ Y F VD+ + AI LNG + + +KV++A + +DT N++V +L +TD L F + + ++ D+ TGR RG FV + +E+AQ AI+ LN Sbjct: 130 NYLPQDMTDRELYALFRAIGPINTCRIMRDYKTGYSFGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPGGESIKDT----NLYVTNLPRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALN 273 The following BLAST results are available for this feature:
BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bpback to top |