CX295688
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_PHANO (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Phaeosphaeria nodorum GN=PAB1 PE=3 SV=3) HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15 Identity = 55/185 (29.73%), Postives = 89/185 (48.11%), Query Frame = 3 Query: 84 PILSGNLPPRFDAS-----TCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602 P SG+ P A+ S+YVG + P VT A+L E+FSS G + ++ + + Y +V+Y A+ LN I G+P ++ W SQR+ +G NVF+ +L + + L F+ F +V D+ G S+G+GFV + E A +AI +NG L +++ Sbjct: 27 PAASGDAPTPTTAAQQAHQNSASLYVGELDPSVTEAMLFELFSSIGQVASIRVCRDAVTRRSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMW----SQRDPALRKTGQGNVFIKNLDHAIDNKALHDTFAAFGNILSCKVAQDE-LGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKV 206
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PABP_CRYNE (Polyadenylate-binding protein, cytoplasmic and nuclear OS=Cryptococcus neoformans GN=PAB1 PE=3 SV=1) HSP 1 Score: 81.2629 bits (199), Expect = 5.605e-15 Identity = 52/174 (29.89%), Postives = 89/174 (51.15%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS---SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---------------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602 +VY+ N+ +VT+A +++ GP L + +K +GFV+Y + SA A+ LN + + G+ + A S+RE S N++V +L E D L A F F T + ++VM D +G SRGFGFV + + ++A A++++NGK +G + + Sbjct: 228 NVYIKNVDLEVTDAEFEDLVKPFGPTISVALSRDEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEKRLENEAKSAGVNLYVKNLDDEWDDDRLRAEFEAFGTITSSKVMRDD-SGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPL 400 HSP 2 Score: 79.7221 bits (195), Expect = 1.631e-14 Identity = 49/163 (30.06%), Postives = 83/163 (50.92%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKL----IKKDKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602 S+YVG + P VT A+L E+F+ GP+ ++ + + Y +V+Y + A+ LN I GQ ++ W SQR+ +G N+F+ +L + + L F+ F +V D+ G+SRGF FV + E A +AI +NG L ++++ Sbjct: 47 SLYVGELDPSVTEAMLFEIFNMIGPVASIRVCRDAVTRRSLGYAYVNYLNAADGERALEHLNYSLIKGQSCRIMW----SQRDPALRKTGQGNIFIKNLDQSIDNKALHDTFAAFGDILSCKVGTDE-NGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKV 204
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: PAP1A_DICDI (Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum GN=pabpc1A PE=1 SV=1) HSP 1 Score: 80.4925 bits (197), Expect = 9.561e-15 Identity = 50/163 (30.67%), Postives = 85/163 (52.15%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKS----SYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT---SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602 S+YVG++ P+V+ L E+F+ G + ++ + + SY +V+Y++ A A+ TLN I G+ ++ W SQR+ + SG NVF+ +L + L+ FS F +V+ D S+GFGFV + QE A AI +NG + +++ Sbjct: 11 SLYVGDLLPEVSEQHLFEIFNQVGLVSNIRVCRDTNTRRSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMW----SQRDPSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNS-SKGFGFVHYETQESADKAIAKVNGMMINGQKV 168 HSP 2 Score: 76.2554 bits (186), Expect = 1.803e-13 Identity = 55/177 (31.07%), Postives = 89/177 (50.28%), Query Frame = 3 Query: 108 PRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQR-EDTSGHF-NVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAAK 623 P S +V++ N+ + + L + FS+ G + CK++ D +S +GFV Y + SA AI +NG I GQ + V +S +R + T F NVF +LS +V L + ++ +M D K G+S+GFGF +F + E A++ + + NGK + I A K Sbjct: 90 PSLRKSGVGNVFIKNLDKGIDHKALYDTFSAFGNILSCKVVTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEVKFTNVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDK-GKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQK 265 HSP 3 Score: 68.1662 bits (165), Expect = 4.910e-11 Identity = 42/167 (25.15%), Postives = 77/167 (46.11%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS---YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGH--------FNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQI 602 +V+ N+ V L+E+ G + ++ DK +GF ++ +A + NG+ G+PI A +RE H N+++ ++ + + L FS F T + A VM D K S+GFGFV + ++A A+ ++NG+ +G + + Sbjct: 189 NVFFKNLSEDVGPDQLKELLQQYGEITNITIMADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTFETKYQGVNLYIKNIDDSIDNDKLREVFSQFGTITSAIVMKDDKATTSKGFGFVCYTAPDEATRAVTEMNGRMIGTKPL 355
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV3_XENLA (ELAV-like protein 3 OS=Xenopus laevis GN=elavl3 PE=2 SV=1) HSP 1 Score: 80.1073 bits (196), Expect = 1.249e-14 Identity = 55/169 (32.54%), Postives = 85/169 (50.30%), Query Frame = 3 Query: 87 ILSGNLPPRFDASTCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581 IL+G D+ T ++ V + +T + +F S G +E CKL++ YGFV+Y D A AI TLNG + + IKV++A SS + N++V L + + FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+ Sbjct: 21 ILNGTNGEADDSKT--NLIVNYLPQNMTQEEFKSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSSLPKTMNQKEMEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQ 184
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ROC1_ARATH (Ribonucleoprotein At2g37220, chloroplastic OS=Arabidopsis thaliana GN=At2g37220 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14 Identity = 62/201 (30.85%), Postives = 97/201 (48.26%), Query Frame = 3 Query: 105 PPRFDA-STCRSVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKD----KSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDT-------------------------SGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWA 617 PP+ + S ++VGN+ V +A L ++F S G +E ++I +GFV A NG + G+P++VN +RED SG+ V+VG+LS V D L + FS +ARV++D+ +GRS+GFGFV++ + ++ Q+AI L+G L RQIR + A Sbjct: 81 PPKEQSFSADLKLFVGNLPFNVDSAQLAQLFESAGNVEMVEVIYDKITGRSRGFGFVTMSSVSEVEAAAQQFNGYELDGRPLRVNAGPPPPKREDGFSRGPRSSFGSSGSGYGGGGGSGAGSGN-RVYVGNLSWGVDDMALESLFSEQGKVVEARVIYDRDSGRSKGFGFVTYDSSQEVQNAIKSLDGADLDGRQIRVSEA 280
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV1_HUMAN (ELAV-like protein 1 OS=Homo sapiens GN=ELAVL1 PE=1 SV=2) HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14 Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 3 Query: 132 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 578 R+ + N PQ +T L+ +FSS G +E KLI+ + YGFV+Y + A AI TLNG + + IKV++A SS+ + N+++ L +T + FS F ++RV+ DQ TG SRG F+ F + +A+ AI NG Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARPSSEVIKDA---NLYISGLPRTMTQKDVEDMFSRFGRIINSRVLVDQTTGLSRGVAFIRFDKRSEAEEAITSFNG 169
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: CSX1_SCHPO (RNA-binding post-transcriptional regulator csx1 OS=Schizosaccharomyces pombe GN=csx1 PE=1 SV=1) HSP 1 Score: 79.337 bits (194), Expect = 2.130e-14 Identity = 49/175 (28.00%), Postives = 91/175 (52.00%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLEGCKLIKKDKSS------YGFVDYFDRRSAALAIVTLNGRHIFGQ--PIKVNWAYASSQREDT----SGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGKWLGNRQIRCNWAA 620 ++++G++ P + +Q++++S K+++ SS Y FV + +A A++ N I G K+NWA + + F++FVGDL P D+ LF F S++P+C+ A+++ D TG SR +GFV F ++++ Q A+ + G R +R + A+ Sbjct: 86 TLWMGDLEPWMDATFIQQLWASLNEPVNVKVMRSKASSSETLISYCFVQFSSSAAAERALMKYNNTMIPGAHCTFKLNWATGGGIQHNNFVSRDPEFSIFVGDLLPTTEDSDLFMTFRSIYPSCTSAKIIVDPVTGLSRKYGFVRFSSEKEQQHALMHMQGYLCQGRPLRISVAS 260
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELV1B_XENLA (ELAV-like protein 1-B OS=Xenopus laevis GN=elavl1-B PE=1 SV=1) HSP 1 Score: 78.9518 bits (193), Expect = 2.782e-14 Identity = 54/154 (35.06%), Postives = 82/154 (53.25%), Query Frame = 3 Query: 132 RSVYVGNIHPQ-VTNALLQEVFSSTGPLEGCKLIKKDKSS----YGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNG 578 R+ + N PQ +T L+ +FSS G +E KLI+ + YGFV+Y + + A AI TLNG + + IKV++A SS+ T N+++ L +T + F F ++RV+ DQ TG SRG F+ F + +A+ AI NG Sbjct: 19 RTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYLNAKDAERAINTLNGLRLQSKTIKVSFARPSSE---TIKDANLYISGLPRTMTQKDVEDMFLPFGHIINSRVLVDQATGLSRGVAFIRFDKRSEAEEAIASFNG 169
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: ELAV3_MOUSE (ELAV-like protein 3 OS=Mus musculus GN=Elavl3 PE=1 SV=1) HSP 1 Score: 78.5666 bits (192), Expect = 3.633e-14 Identity = 52/149 (34.90%), Postives = 78/149 (52.35%), Query Frame = 3 Query: 150 NIHPQ-VTNALLQEVFSSTGPLEGCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQPIKVNWAYASSQREDTSGHFNVFVGDLSPEVTDATLFACFSVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDLNGK 581 N PQ +T + +F S G +E CKL++ YGFV+Y D A AI TLNG + + IKV++A SS + N++V L ++ + FS + +R++ DQ TG SRG GF+ F + +A+ AI LNG+ Sbjct: 44 NYLPQNMTQDEFKSLFGSIGDIESCKLVRDKITGQSLGYGFVNYSDPNDADKAINTLNGLKLQTKTIKVSYARPSSASIRDA---NLYVSGLPKTMSQKEMEQLFSQYGRIITSRILLDQATGVSRGVGFIRFDKRIEAEEAIKGLNGQ 189
BLAST of CX295688 vs. ExPASy Swiss-Prot
Match: TSP1L_DANRE (tRNA selenocysteine 1-associated protein 1-like OS=Danio rerio GN=trnau1apl PE=2 SV=1) HSP 1 Score: 78.1814 bits (191), Expect = 4.745e-14 Identity = 56/171 (32.75%), Postives = 89/171 (52.05%), Query Frame = 3 Query: 135 SVYVGNIHPQVTNALLQEVFSSTGPLE-GCKLIKK----DKSSYGFVDYFDRRSAALAIVTLNGRHIFGQ--PIKVNWAYAS-SQREDTSGHFNVFVGDLSPEVTDATLFACF-SVFPTCSDARVMWDQKTGRSRGFGFVSFRNQEDAQSAINDL-NGKWLGNRQIRCNWA 617 S+++G++ P + +++ FS+ G G K+I + Y FV+ D S + LNG+ + G P K YA+ +R + F+VFVGDL+ EV D L F FP+C A+V+ D G SRG+GFV F ++ + + A+ + N LG + IR + A Sbjct: 7 SLWMGDLDPYMDENFIKQAFSTMGETAFGVKIITHRVTGGSAGYCFVEMADEASVDRCVQRLNGKLVPGSNPPRKFKLNYATYGKRPEPGPEFSVFVGDLTSEVDDYQLHQFFLKKFPSCKGAKVVTD-PYGNSRGYGFVKFSDENEQKKALEEFQNASGLGGKPIRISIA 176 The following BLAST results are available for this feature:
BLAST of CX295688 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 123
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295688 ID=CX295688; Name=CX295688; organism=Citrus clementina; type=EST; length=700bpback to top |