CX295696

Overview
NameCX295696
Unique NameCX295696
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig1819 contig Ccv1_Contig1819:5..744. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: CP20A_ARATH (Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Arabidopsis thaliana GN=CYP20-1 PE=1 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.019e-43
Identity = 92/160 (57.50%), Postives = 109/160 (68.12%), Query Frame = 2
Query:  269 MGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            +GT S ++A     +L+ ++T+KVYFDV I    GK AGRIV+GL+G  VP+T ENFRALCTGEKG G       YKGS+FHR+I  FM+Q             SIYG  F DENFKL H GPG +SMANAG +TNGSQFFI TV T WLD RHVVFG+V
Sbjct:   15 LGTLSAIQAKKSKENLK-EITHKVYFDVEID---GKAAGRIVMGLFGKTVPKTVENFRALCTGEKGIGKNGKALHYKGSSFHRIIPSFMLQGGDFTHGNGMGGESIYGEKFADENFKLKHTGPGFLSMANAGQDTNGSQFFITTVTTSWLDGRHVVFGKV 170          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: CP19D_ARATH (Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Arabidopsis thaliana GN=CYP19-4 PE=1 SV=2)

HSP 1 Score: 173.711 bits (439), Expect = 9.167e-43
Identity = 92/152 (60.53%), Postives = 105/152 (69.08%), Query Frame = 2
Query:  293 ASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFG-------YKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            AS +  +   +VT+KVYFDV I    GK AGR+VIGL+G  VP+TAENFRALCTGEKG G       YKGS FHR+I  FMIQ             SIYG+ F DENFKL H GPGV+SMAN+G +TNGSQFFI TV T WLD RHVVFG+V
Sbjct:   19 ASIQAKEDLKEVTHKVYFDVEID---GKSAGRVVIGLFGKAVPKTAENFRALCTGEKGVGKSGKPLHYKGSKFHRIIPSFMIQGGDFTHGNGMGGESIYGQKFADENFKLKHTGPGVLSMANSGEDTNGSQFFITTVTTSWLDGRHVVFGKV 167          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIB_NEUCR (Peptidyl-prolyl cis-trans isomerase B OS=Neurospora crassa GN=cpr-2 PE=3 SV=3)

HSP 1 Score: 172.94 bits (437), Expect = 1.564e-42
Identity = 93/153 (60.78%), Postives = 106/153 (69.28%), Query Frame = 2
Query:  269 MGTRSLVRASAEVADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            +G   L   SAE A    K+T+KVYFD+  G+   K  GRIV+GLYG  VP+TAENFRAL TGEKGFGY+GSTFHRVIK FMIQ             SIYG  F DENFKL H   G++SMANAG +TNGSQFFI TV T WLD +HVVFG+V
Sbjct:   15 LGAMLLFAQSAEAAK-GPKITHKVYFDIEQGD---KPLGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKQFMIQGGDFTKGDGTGGKSIYGDKFPDENFKLKHSKKGLLSMANAGKDTNGSQFFITTVITSWLDGKHVVFGEV 163          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIB_SCHPO (Peptidyl-prolyl cis-trans isomerase B OS=Schizosaccharomyces pombe GN=cyp4 PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.667e-42
Identity = 86/135 (63.70%), Postives = 100/135 (74.07%), Query Frame = 2
Query:  323 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            KVT+ VYFD+  G+   +  GR+ IGL+G  VP+TAENFRAL TGEKGFGY+GS FHRVI +FMIQ             SIYG  F DENFKLSH  PG++SMANAGP++NGSQFFI TVKTPWLD  HVVFG+V
Sbjct:   24 KVTDTVYFDLQQGD---EFLGRVTIGLFGKTVPKTAENFRALATGEKGFGYEGSIFHRVIPNFMIQGGDITKGDGTGGKSIYGSRFPDENFKLSHQRPGLLSMANAGPDSNGSQFFITTVKTPWLDGHHVVFGEV 155          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIB_CHICK (Peptidyl-prolyl cis-trans isomerase B OS=Gallus gallus GN=PPIB PE=2 SV=1)

HSP 1 Score: 172.17 bits (435), Expect = 2.667e-42
Identity = 88/135 (65.19%), Postives = 99/135 (73.33%), Query Frame = 2
Query:  323 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            KVT KV+FD+ +G    + AGR+VIGL+G  VP+T ENF AL TGEKGFG+KGS FHRVIKDFMIQ             SIYG  F DENFKL H GPG VSMANAG +TNGSQFFI TVKT WLD +HVVFG+V
Sbjct:   32 KVTAKVFFDLRVGE---EDAGRVVIGLFGKTVPKTVENFVALATGEKGFGFKGSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGDRFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTAWLDGKHVVFGKV 163          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIC_MOUSE (Peptidyl-prolyl cis-trans isomerase C OS=Mus musculus GN=Ppic PE=1 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.483e-42
Identity = 96/169 (56.80%), Postives = 111/169 (65.68%), Query Frame = 2
Query:  227 LTPVPPLTHFPTRKMGTRSLVRASAE--VADLQSKVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            ++P P L       +G  +LV +S    V      VT+KV+FDV IG+   K  GRIVIGL+G+ VP+T ENF AL TGEKG+GYKGS FHRVIKDFMIQ             SIYG TF DENFKL H G G VSMANAGP+TNGSQFFI   K  WLD +HVVFG+V
Sbjct:    1 MSPGPRLLLPAVLCLGLGALVSSSGSSGVRKRGPSVTDKVFFDVRIGD---KDVGRIVIGLFGNVVPKTVENFVALATGEKGYGYKGSIFHRVIKDFMIQGGDFTARDGTGGMSIYGETFPDENFKLKHYGIGWVSMANAGPDTNGSQFFITLTKPTWLDGKHVVFGKV 166          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIF_BOVIN (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Bos taurus GN=PPIF PE=1 SV=2)

HSP 1 Score: 171.4 bits (433), Expect = 4.549e-42
Identity = 86/130 (66.15%), Postives = 93/130 (71.54%), Query Frame = 2
Query:  338 VYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            VY DV      G+  GR+V+ L  D VP+TAENFRALCTGEKGFGYKGSTFHRVI  FM Q             SIYG  F DENFKL H GPGV+SMANAGPNTNGSQFFICT+KT WLD +HVVFG V
Sbjct:   49 VYLDVGAD---GQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPSFMCQAGDFTNHNGTGGKSIYGSRFPDENFKLKHEGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV 175          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIB_ARTBE (Peptidyl-prolyl cis-trans isomerase B OS=Arthroderma benhamiae GN=CPR2 PE=2 SV=1)

HSP 1 Score: 171.4 bits (433), Expect = 4.549e-42
Identity = 87/135 (64.44%), Postives = 99/135 (73.33%), Query Frame = 2
Query:  323 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            K+T+KVYFD+      G+  GRIV+GLYG  VP+TAENFRAL TGEKGFGY+GSTFHRVIKDFMIQ             SIYG  F+DENFKL H   GV+SMANAG +TNGSQFFI T  T WLD +HVVFG+V
Sbjct:   32 KITSKVYFDIEHD---GQPLGRIVMGLYGKTVPKTAENFRALATGEKGFGYEGSTFHRVIKDFMIQGGDFTNGDGTGGKSIYGNKFEDENFKLRHTKKGVLSMANAGKDTNGSQFFITTAITAWLDGKHVVFGEV 163          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIB_MOUSE (Peptidyl-prolyl cis-trans isomerase B OS=Mus musculus GN=Ppib PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 5.942e-42
Identity = 87/135 (64.44%), Postives = 97/135 (71.85%), Query Frame = 2
Query:  323 KVTNKVYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            KVT KVYFD+ IG+   +  GR+V GL+G  VP+T +NF AL TGEKGFGYK S FHRVIKDFMIQ             SIYG  F DENFKL H GPG VSMANAG +TNGSQFFI TVKT WLD +HVVFG+V
Sbjct:   41 KVTVKVYFDLQIGD---ESVGRVVFGLFGKTVPKTVDNFVALATGEKGFGYKNSKFHRVIKDFMIQGGDFTRGDGTGGKSIYGERFPDENFKLKHYGPGWVSMANAGKDTNGSQFFITTVKTSWLDGKHVVFGKV 172          
BLAST of CX295696 vs. ExPASy Swiss-Prot
Match: PPIF_RAT (Peptidyl-prolyl cis-trans isomerase, mitochondrial OS=Rattus norvegicus GN=Ppif PE=1 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 7.760e-42
Identity = 85/130 (65.38%), Postives = 93/130 (71.54%), Query Frame = 2
Query:  338 VYFDVSIGNPVGKLAGRIVIGLYGDDVPETAENFRALCTGEKGFGYKGSTFHRVIKDFMIQXXXXXXXXXXXXXSIYGRTFKDENFKLSHIGPGVVSMANAGPNTNGSQFFICTVKTPWLDQRHVVFGQV 727
            VY DV      G+  GR+V+ L  D VP+TAENFRALCTGEKGFGYKGSTFHRVI  FM Q             SIYG  F DENF L H+GPGV+SMANAGPNTNGSQFFICT+KT WLD +HVVFG V
Sbjct:   47 VYLDVGAD---GQPLGRVVLELKADVVPKTAENFRALCTGEKGFGYKGSTFHRVIPAFMCQAGDFTNHNGTGGKSIYGSRFPDENFTLKHVGPGVLSMANAGPNTNGSQFFICTIKTDWLDGKHVVFGHV 173          
The following BLAST results are available for this feature:
BLAST of CX295696 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 229
Match NameE-valueIdentityDescription
CP20A_ARATH7.019e-4357.50Peptidyl-prolyl cis-trans isomerase CYP20-1 OS=Ara... [more]
CP19D_ARATH9.167e-4360.53Peptidyl-prolyl cis-trans isomerase CYP19-4 OS=Ara... [more]
PPIB_NEUCR1.564e-4260.78Peptidyl-prolyl cis-trans isomerase B OS=Neurospor... [more]
PPIB_SCHPO2.667e-4263.70Peptidyl-prolyl cis-trans isomerase B OS=Schizosac... [more]
PPIB_CHICK2.667e-4265.19Peptidyl-prolyl cis-trans isomerase B OS=Gallus ga... [more]
PPIC_MOUSE3.483e-4256.80Peptidyl-prolyl cis-trans isomerase C OS=Mus muscu... [more]
PPIF_BOVIN4.549e-4266.15Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]
PPIB_ARTBE4.549e-4264.44Peptidyl-prolyl cis-trans isomerase B OS=Arthroder... [more]
PPIB_MOUSE5.942e-4264.44Peptidyl-prolyl cis-trans isomerase B OS=Mus muscu... [more]
PPIF_RAT7.760e-4265.38Peptidyl-prolyl cis-trans isomerase, mitochondrial... [more]

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Properties
Property NameValue
Genbank descriptionC05074H10SK DroRLeaf1 Citrus clementina cDNA clone C05074H10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295696 ID=CX295696; Name=CX295696; organism=Citrus clementina; type=EST; length=740bp
ATCTTTTATCTGAATCTCTCACACACCGACTCTGAGGCACTTGTCCATTC
CATCAATGGCGGCAGCGGCTTCATTCGCAGCCCAGATAAATGTAGGCTCG
GTCTCAGGCCCACTTCAACTGAACAAAGCTCTCAGTCCCTCGCGTAATGC
AATCGAGATACCCAGAAAATCTTCTTCATTCCTATCAAATGCTTCATCAT
CCTGCTCCAGCTTCTTCTCCCGTCCGTTGACTCCCGTTCCCCCTCTCACT
CATTTTCCCACCAGGAAAATGGGTACGCGTAGCCTTGTTCGGGCCAGTGC
TGAGGTAGCTGATTTACAATCGAAAGTTACCAATAAAGTTTATTTCGATG
TGAGCATTGGGAATCCAGTAGGAAAGCTTGCTGGAAGAATCGTGATTGGA
TTGTACGGTGATGATGTGCCCGAAACGGCAGAGAACTTCCGTGCTTTATG
CACAGGAGAGAAGGGCTTTGGTTACAAAGGTTCCACGTTCCATCGTGTTA
TCAAAGATTTCATGATCCAAGGAGGAGACTTTGATAAAGGCAATGGAACT
GGAGGTAAAAGTATATACGGCCGTACATTCAAAGATGAGAACTTCAAATT
GTCGCATATTGGACCAGGAGTAGTTAGTATGGCAAATGCAGGTCCCAACA
CTAATGGCAGCCAATTTTTCATTTGCACTGTCAAGACACCATGGCTAGAT
CAGAGGCATGTTGTCTTTGGGCAAGTTTGGAGGCATGGAC
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