CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_RHOBA (Chaperone protein clpB OS=Rhodopirellula baltica GN=clpB PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.868e-27
Identity = 64/129 (49.61%), Postives = 86/129 (66.67%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ +++ E++ S G VILFIDE+H ++G+G     N     D +NLLKP L RG L+CI +TT DE+R   EKD AL RRFQPV + EP+ ED V IL GL+ +YE+HH  + T  A+ AA +LS R
Sbjct:  257 EERLKSVLREVKDSDGKVILFIDELHLVVGAG-----NAEGSADAANLLKPELARGALRCIGATTLDEYRQHIEKDAALERRFQPVFVGEPNVEDTVAILRGLKPRYESHHGVRITDSALVAAANLSDR 380          

HSP 2 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 34/64 (53.12%), Postives = 48/64 (75.00%), Query Frame = 2
Query:  500 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            V  ++IA V S W+G+PV ++   ER  L+ +EE+L +RV+GQDEAV A+S AV+RSR GL+DP
Sbjct:  554 VTEEEIAEVVSTWTGVPVTRMMETERAKLLVMEERLHQRVVGQDEAVTAVSDAVRRSRSGLQDP 617          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_PHOLL (Chaperone protein clpB OS=Photorhabdus luminescens subsp. laumondii GN=clpB PE=3 SV=1)

HSP 1 Score: 121.709 bits (304), Expect = 3.868e-27
Identity = 65/130 (50.00%), Postives = 89/130 (68.46%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++++ K  G+VILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ V ++EPS ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  256 EERLKGVLNDLAKQEGNVILFIDELHTMVGAG------KADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVYVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379          

HSP 2 Score: 67.3958 bits (163), Expect = 8.658e-11
Identity = 32/60 (53.33%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  512 DIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            +IA + + W+GIPV ++   E+  L+ +E++L KRVIGQDEAV AIS A++RSR GL DP
Sbjct:  535 EIADILARWTGIPVARMLESEKDKLLRMEQELHKRVIGQDEAVNAISNAIRRSRAGLADP 594          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB2_ANASP (Chaperone protein clpB 2 OS=Anabaena sp. (strain PCC 7120) GN=clpB2 PE=3 SV=2)

HSP 1 Score: 121.709 bits (304), Expect = 3.868e-27
Identity = 61/129 (47.29%), Postives = 86/129 (66.67%), Query Frame = 3
Query:    3 EARVTTLISEIQKSG-DVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+ +SG +++LFIDE+HT++G+G          +D  NLLKP L RGEL+CI +TT DE+R   EKD AL RRFQ V + +PS ED + IL GL+E+YE HH  K +  ++ AA  LS+R
Sbjct:  258 EERLKAVLKEVTESGGNIVLFIDEIHTVVGAGATQGA-----MDAGNLLKPMLARGELRCIGATTLDEYRKYIEKDAALERRFQQVYVDQPSVEDTISILRGLKERYEVHHGVKISDSSLVAAATLSSR 381          

HSP 2 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 31/60 (51.67%), Postives = 44/60 (73.33%), Query Frame = 2
Query:  512 DIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            DIA + S W+GIP+ ++   E+  L+ LE++L  RVIGQDEAV A++ A++RSR GL DP
Sbjct:  541 DIAEIISKWTGIPISKLVESEKEKLLHLEDELHHRVIGQDEAVTAVADAIQRSRAGLADP 600          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_STRAL (Chaperone protein clpB OS=Streptomyces albus G GN=clpB PE=2 SV=1)

HSP 1 Score: 121.324 bits (303), Expect = 5.052e-27
Identity = 62/129 (48.06%), Postives = 89/129 (68.99%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ T++SEI++S G ++ FIDE+HT++G+G        + +D  N+LKP L RGEL+ + +TT DE+R + EKD AL RRFQ VL++EPS ED++ IL GL+ +YEAHH  +    A+ AA  LS R
Sbjct:  257 EERLKTVLSEIKESDGQIVTFIDELHTVVGAGAAD-----SAMDAGNMLKPMLARGELRMVGATTLDEYRERIEKDPALERRFQQVLVAEPSVEDSIAILRGLKGRYEAHHKVQIADSALVAAATLSDR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: HS104_SCHPO (Heat shock protein 104 OS=Schizosaccharomyces pombe GN=hsp104 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 60/129 (46.51%), Postives = 87/129 (67.44%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGD-VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ +++ E+++S   +ILF+DE+H L+G+G+ G G    G+D +NLLKP L RG+L CI +TT  E++   EKD A  RRFQ +L+ EPS ED + IL GL+EKYE HH    +  A+  A HL++R
Sbjct:  259 EERIKSVLKEVEESETPIILFVDEMHLLMGAGSGGEG----GMDAANLLKPMLARGKLHCIGATTLAEYKKYIEKDAAFERRFQIILVKEPSIEDTISILRGLKEKYEVHHGVTISDRALVTAAHLASR 383          

HSP 2 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 34/80 (42.50%), Postives = 52/80 (65.00%), Query Frame = 2
Query:  461 SLPSASDDDEPA---VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            ++ +A    EP    VVGPD I  + + W+GIPV ++   E+  L+ +E+ L K+VIGQ+EAV A++ A++ SR GL DP
Sbjct:  531 AIANAQPGSEPLLIDVVGPDQINEIVARWTGIPVTRLKTTEKERLLNMEKVLSKQVIGQNEAVTAVANAIRLSRAGLSDP 610          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMB (Chaperone protein clpB OS=Neisseria meningitidis serogroup B GN=clpB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 63/129 (48.84%), Postives = 84/129 (65.12%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++++ K  G+ ++FIDE+HTL+G+G          +D  N+LKP+L RGEL CI +TT DE+R   EKD AL RRFQ VL+ EPS ED + IL GL+E+YE HH    T  AI AA  LS R
Sbjct:  256 EERLKGVLNDLAKDDGNTLIFIDEIHTLVGAGKTDGA-----MDAGNMLKPALARGELHCIGATTLDEYRQYIEKDAALERRFQKVLVGEPSVEDTIAILRGLQERYEIHHGIDITDPAIVAAAELSDR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_NEIMA (Chaperone protein clpB OS=Neisseria meningitidis serogroup A GN=clpB PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 63/129 (48.84%), Postives = 84/129 (65.12%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++++ K  G+ ++FIDE+HTL+G+G          +D  N+LKP+L RGEL CI +TT DE+R   EKD AL RRFQ VL+ EPS ED + IL GL+E+YE HH    T  AI AA  LS R
Sbjct:  256 EERLKGVLNDLAKDDGNTLIFIDEIHTLVGAGKTDGA-----MDAGNMLKPALARGELHCIGATTLDEYRQYIEKDAALERRFQKVLVGEPSVEDTIAILRGLQERYEIHHGIDITDPAIVAAAELSDR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB1_STRAW (Chaperone protein clpB 1 OS=Streptomyces avermitilis GN=clpB1 PE=3 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.598e-27
Identity = 63/129 (48.84%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ T+++EI+ S G +I FIDE+HT++G+G  G     + +D  N+LKP L RGEL+ + +TT DE+R + EKD AL RRFQ VL++EPS ED + IL GL+ +YEAHH  +    A+ AA  LS R
Sbjct:  257 EERLKTVLAEIKDSDGQIITFIDELHTVVGAGAGG----DSAMDAGNMLKPMLARGELRMVGATTLDEYRERIEKDPALERRFQQVLVAEPSVEDTIAILRGLKGRYEAHHKVQIADSALVAAAALSDR 381          

HSP 2 Score: 74.3294 bits (181), Expect = 7.082e-13
Identity = 42/99 (42.42%), Postives = 58/99 (58.59%), Query Frame = 2
Query:  395 SRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            S+L Y ++ A   D  E   E+   +A D      VGPDDIA V   W+GIP  ++   E   L+ +EE+L  R+IGQ EAV A+S AV+R+R G+ DP
Sbjct:  501 SKLLYGEIPALERDLEE-ASEAEEEAARDTMVKEEVGPDDIADVVGSWTGIPAGRLLEGETQKLLRMEEELGHRLIGQSEAVQAVSDAVRRTRAGIADP 598          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_PORPU (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Porphyra purpurea GN=clpC PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 61/122 (50.00%), Postives = 82/122 (67.21%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 368
            E R+  ++ EI+ + +VIL IDEVHTLIG+G          +D +NLLKP+L RGELQCI +TT +E+R   EKD AL RRF PV++ EPS E+ + IL GLR++YE HH    +  A+ AA
Sbjct:  260 EERLKRIMDEIKSADNVILVIDEVHTLIGAGAAEGA-----IDAANLLKPALARGELQCIGATTLEEYRKHIEKDPALERRFHPVVVGEPSVEETIEILFGLRDRYEKHHQLTMSDGALAAA 376          

HSP 2 Score: 77.411 bits (189), Expect = 8.366e-14
Identity = 43/102 (42.16%), Postives = 61/102 (59.80%), Query Frame = 2
Query:  404 KYDDVVASMGDTSEIVVESSLPSASDDDEP------AVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            KY+          EI  + +  + S  +EP       VV  DDIA + + W+GIPV ++T  E   L+ +EE L  R+IGQDEAV A+SRA++R+RVGLK+P
Sbjct:  437 KYETAEQYRAREMEIKAQIAAIAQSKKNEPDLNLEDPVVTEDDIAEIVAAWTGIPVTKLTKSESEKLMQMEETLHGRIIGQDEAVIAVSRAIRRARVGLKNP 538          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_XANCP (Chaperone protein clpB OS=Xanthomonas campestris pv. campestris GN=clpB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 64/130 (49.23%), Postives = 86/130 (66.15%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++S++ K+ G +ILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL CI +TT DE+R   EKD AL RRFQ V + EP+ ED + IL GL+E+Y  HH  + T  AI AA  LS R
Sbjct:  256 EERLKAVLSDLSKNEGQIILFIDELHTMVGAG------KADGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKERYAVHHGVEITDPAIVAAATLSNR 379          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB_RHOBA3.868e-2749.61Chaperone protein clpB OS=Rhodopirellula baltica G... [more]
CLPB_PHOLL3.868e-2750.00Chaperone protein clpB OS=Photorhabdus luminescens... [more]
CLPB2_ANASP3.868e-2747.29Chaperone protein clpB 2 OS=Anabaena sp. (strain P... [more]
CLPB_STRAL5.052e-2748.06Chaperone protein clpB OS=Streptomyces albus G GN=... [more]
HS104_SCHPO6.598e-2746.51Heat shock protein 104 OS=Schizosaccharomyces pomb... [more]
CLPB_NEIMB6.598e-2748.84Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB_NEIMA6.598e-2748.84Chaperone protein clpB OS=Neisseria meningitidis s... [more]
CLPB1_STRAW6.598e-2748.84Chaperone protein clpB 1 OS=Streptomyces avermitil... [more]
CLPC_PORPU8.617e-2750.00ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_XANCP8.617e-2749.23Chaperone protein clpB OS=Xanthomonas campestris p... [more]

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Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
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