CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_XANAC (Chaperone protein clpB OS=Xanthomonas axonopodis pv. citri GN=clpB PE=3 SV=2)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 64/130 (49.23%), Postives = 86/130 (66.15%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++S++ K+ G +ILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL CI +TT DE+R   EKD AL RRFQ V + EP+ ED + IL GL+E+Y  HH  + T  AI AA  LS R
Sbjct:  256 EERLKAVLSDLSKNEGQIILFIDELHTMVGAG------KADGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKERYAVHHGVEITDPAIVAAATLSNR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_STRCO (Chaperone protein clpB OS=Streptomyces coelicolor GN=clpB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 62/129 (48.06%), Postives = 89/129 (68.99%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ T+++EI+ S G V+ FIDE+HT++G+G  G     + +D  N+LKP L RGEL+ + +TT DE+R + EKD AL RRFQ VL++EP+ ED++ IL GL+ +YEAHH  +    A+ AA  LS R
Sbjct:  257 EERLKTVLAEIKDSDGQVVTFIDELHTVVGAGAGG----DSAMDAGNMLKPMLARGELRMVGATTLDEYRERIEKDPALERRFQQVLVAEPTVEDSIAILRGLKGRYEAHHKVQIADSALVAAASLSDR 381          

HSP 2 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 37/88 (42.05%), Postives = 54/88 (61.36%), Query Frame = 2
Query:  452 VESSLPSASDDDEPAV--------VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            +E  L +AS+ +E           VG DDIA V + W+GIP  ++   E   L+ +E++L KR+IGQ +AV A+S AV+RSR G+ DP
Sbjct:  511 LERDLEAASEAEEEVARDTMVKEEVGADDIADVVASWTGIPAGRLLEGETQKLLRMEDELGKRLIGQTQAVRAVSDAVRRSRAGIADP 598          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_MYCPA (Chaperone protein clpB OS=Mycobacterium paratuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 61/129 (47.29%), Postives = 84/129 (65.12%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ +I+ S G +I FIDE+HT++G+G  G G     +D  N++KP L RGEL+ + +TT DE+R   EKD AL RRFQ V + EPS ED V IL GL+++YE HH  + T  A+ AA  LS R
Sbjct:  256 EERLKAVLDDIKNSAGQIITFIDELHTIVGAGATGEG----AMDAGNMIKPMLARGELRLVGATTLDEYRKYIEKDAALERRFQQVFVGEPSVEDTVGILRGLKDRYEVHHGVRITDSALVAAATLSDR 380          

HSP 2 Score: 72.0182 bits (175), Expect = 3.515e-12
Identity = 37/83 (44.58%), Postives = 54/83 (65.06%), Query Frame = 2
Query:  452 VESSLPSASDDDEPAV---VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            +E++LP A   +   +   VGPDDIA V S W+GIP  ++   E   L+ +E++L KRV+GQ  AV A+S AV+R+R G+ DP
Sbjct:  514 LEAALPQAEARENVMLKEEVGPDDIAEVVSAWTGIPAGRMLEGETAKLLRMEDELGKRVVGQKRAVQAVSDAVRRARAGVADP 596          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_LEPIN (Chaperone protein clpB OS=Leptospira interrogans GN=clpB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 65/129 (50.39%), Postives = 84/129 (65.12%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  L+ E++ S G+VILFIDE+HTL+G+G          LD SN+LKP L RGEL+CI +TT  E++   EKD AL RRFQPV + EPS E+ V IL GL+ +YE HH  +    A+ AA  LS R
Sbjct:  258 EDRLKALLDEVKSSDGEVILFIDEIHTLVGAGATEGA-----LDASNMLKPMLARGELRCIGATTLKEYQKYIEKDAALERRFQPVYVKEPSVEETVTILRGLKGRYELHHGIRILDSALIAAATLSNR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_LEPIC (Chaperone protein clpB OS=Leptospira interrogans serogroup Icterohaemorrhagiae serovar copenhageni GN=clpB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 65/129 (50.39%), Postives = 84/129 (65.12%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  L+ E++ S G+VILFIDE+HTL+G+G          LD SN+LKP L RGEL+CI +TT  E++   EKD AL RRFQPV + EPS E+ V IL GL+ +YE HH  +    A+ AA  LS R
Sbjct:  258 EDRLKALLDEVKSSDGEVILFIDEIHTLVGAGATEGA-----LDASNMLKPMLARGELRCIGATTLKEYQKYIEKDAALERRFQPVYVKEPSVEETVTILRGLKGRYELHHGIRILDSALIAAATLSNR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_GLOVI (Chaperone protein clpB OS=Gloeobacter violaceus GN=clpB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 61/129 (47.29%), Postives = 85/129 (65.89%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++E+ KS G ++LFIDE+HT++G+G          +D  NLLKP L RGEL+CI +TT DE+R   EKD AL RRFQ V + +P+ ED + IL GL+E+YE HH  + +  A+ AA  LS R
Sbjct:  259 EERLKAVLNEVTKSEGQIVLFIDEIHTVVGAGATQGA-----MDAGNLLKPMLARGELRCIGATTLDEYRKYIEKDAALERRFQQVYVDQPTVEDTISILRGLKERYEVHHGVRISDSALVAAAVLSHR 382          

HSP 2 Score: 72.7886 bits (177), Expect = 2.061e-12
Identity = 34/64 (53.12%), Postives = 47/64 (73.44%), Query Frame = 2
Query:  500 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            V  +DIA + S W+GIPV ++ A ER  L+ LE++L KRV+GQ+EAV  +S A++RSR GL DP
Sbjct:  538 VTEEDIAEIISKWTGIPVSKLVASEREKLLHLEDELHKRVVGQEEAVRIVSEAIQRSRAGLADP 601          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_CLOAB (Chaperone protein clpB OS=Clostridium acetobutylicum GN=clpB PE=3 SV=1)

HSP 1 Score: 120.553 bits (301), Expect = 8.617e-27
Identity = 64/130 (49.23%), Postives = 87/130 (66.92%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSG-TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+++S G +ILFIDE+HT++G+G T G       +D  N++KP L RGEL CI +TT DE+R   EKDKAL RRFQ V I EP+ +DA+ IL GL+E++E HH  +    AI AA  LS R
Sbjct:  260 EERLKAVLKEVERSEGKIILFIDEIHTIVGAGKTEG------AMDAGNIIKPMLARGELHCIGATTFDEYRKYIEKDKALERRFQKVQIDEPTVDDAISILRGLKERFEIHHGVRIHDNAIVAAAKLSDR 383          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: HSP98_NEUCR (Heat shock protein hsp98 OS=Neurospora crassa GN=hsp98 PE=1 SV=2)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 63/129 (48.84%), Postives = 85/129 (65.89%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGD-VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI +S + +ILFIDE+H L+G+G  G G    G+D +NLLKP L RG+L CI +TT  E+R   EKD A  RRFQ V++ EPS  + + IL GL+EKYE HH    +  AI AA +L+AR
Sbjct:  274 EERMKGVLKEISESKEMIILFIDEIHLLMGAGASGEG----GMDAANLLKPMLARGQLHCIGATTLAEYRKYIEKDAAFERRFQQVIVKEPSVSETISILRGLKEKYEVHHGVTISDAAIVAAANLAAR 398          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_MYCTU (Chaperone protein clpB OS=Mycobacterium tuberculosis GN=clpB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 60/129 (46.51%), Postives = 84/129 (65.12%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ +I+ S G +I FIDE+HT++G+G  G G     +D  N++KP L RGEL+ + +TT DE+R   EKD AL RRFQ V + EPS ED + IL GL+++YE HH  + T  A+ AA  LS R
Sbjct:  256 EERLKAVLDDIKNSAGQIITFIDELHTIVGAGATGEG----AMDAGNMIKPMLARGELRLVGATTLDEYRKHIEKDAALERRFQQVYVGEPSVEDTIGILRGLKDRYEVHHGVRITDSALVAAATLSDR 380          

HSP 2 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  452 VESSLPSASDDDEPAV---VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            ++++LP A   ++  +   VGPDDIA V S W+GIP  ++   E   L+ +E++L KRVIGQ  AV A+S AV+RSR G+ DP
Sbjct:  514 LDAALPQAQAREQVMLKEEVGPDDIADVVSAWTGIPAGRLLEGETAKLLRMEDELGKRVIGQKAAVTAVSDAVRRSRAGVSDP 596          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_MYCBO (Chaperone protein clpB OS=Mycobacterium bovis GN=clpB PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 60/129 (46.51%), Postives = 84/129 (65.12%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ +I+ S G +I FIDE+HT++G+G  G G     +D  N++KP L RGEL+ + +TT DE+R   EKD AL RRFQ V + EPS ED + IL GL+++YE HH  + T  A+ AA  LS R
Sbjct:  256 EERLKAVLDDIKNSAGQIITFIDELHTIVGAGATGEG----AMDAGNMIKPMLARGELRLVGATTLDEYRKHIEKDAALERRFQQVYVGEPSVEDTIGILRGLKDRYEVHHGVRITDSALVAAATLSDR 380          

HSP 2 Score: 73.559 bits (179), Expect = 1.208e-12
Identity = 38/83 (45.78%), Postives = 55/83 (66.27%), Query Frame = 2
Query:  452 VESSLPSASDDDEPAV---VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            ++++LP A   ++  +   VGPDDIA V S W+GIP  ++   E   L+ +E++L KRVIGQ  AV A+S AV+RSR G+ DP
Sbjct:  514 LDAALPQAQAREQVMLKEEVGPDDIADVVSAWTGIPAGRLLEGETAKLLRMEDELGKRVIGQKAAVTAVSDAVRRSRAGVSDP 596          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB_XANAC8.617e-2749.23Chaperone protein clpB OS=Xanthomonas axonopodis p... [more]
CLPB_STRCO8.617e-2748.06Chaperone protein clpB OS=Streptomyces coelicolor ... [more]
CLPB_MYCPA8.617e-2747.29Chaperone protein clpB OS=Mycobacterium paratuberc... [more]
CLPB_LEPIN8.617e-2750.39Chaperone protein clpB OS=Leptospira interrogans G... [more]
CLPB_LEPIC8.617e-2750.39Chaperone protein clpB OS=Leptospira interrogans s... [more]
CLPB_GLOVI8.617e-2747.29Chaperone protein clpB OS=Gloeobacter violaceus GN... [more]
CLPB_CLOAB8.617e-2749.23Chaperone protein clpB OS=Clostridium acetobutylic... [more]
HSP98_NEUCR1.125e-2648.84Heat shock protein hsp98 OS=Neurospora crassa GN=h... [more]
CLPB_MYCTU1.125e-2646.51Chaperone protein clpB OS=Mycobacterium tuberculos... [more]
CLPB_MYCBO1.125e-2646.51Chaperone protein clpB OS=Mycobacterium bovis GN=c... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
back to top