CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNE7 (Chaperone protein clpB 1 OS=Synechococcus elongatus (strain PCC 7942) GN=clpB1 PE=2 SV=3)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 63/129 (48.84%), Postives = 87/129 (67.44%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+  S G +ILFIDE+HT++G+G V    +G+ +D  NLLKP L RGEL+CI +TT DE+R   EKD AL RRFQ V + +P+ ED + IL GL+E+YE HH  + +  A+ AA  LS R
Sbjct:  258 EERLKAVLKEVTDSEGIIILFIDEIHTVVGAGAV----QGS-MDAGNLLKPMLARGELRCIGATTLDEYRQYIEKDAALERRFQQVFVDQPTVEDTISILRGLKERYEVHHGVRISDNALVAAAVLSTR 381          

HSP 2 Score: 68.9366 bits (167), Expect = 2.976e-11
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 2
Query:  512 DIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            DIA + S W+GIPV ++   E   L+ L+E+L +RVIGQ+EAV+A++ A++RSR GL DP
Sbjct:  541 DIAEIISKWTGIPVSKLVESEMQKLLNLDEELHQRVIGQEEAVSAVADAIQRSRAGLSDP 600          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPA_ECOLI (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli (strain K12) GN=clpA PE=1 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 59/128 (46.09%), Postives = 88/128 (68.75%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R   L+ ++++  + ILFIDE+HT+IG+G    G     +D +NL+KP L  G+++ I STT  E    FEKD+ALARRFQ + I+EPS E+ V+I+ GL+ KYEAHH+ ++T +A+ AAV L+ +
Sbjct:  264 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ----VDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPA_ECOL6 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O6 GN=clpA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 59/128 (46.09%), Postives = 88/128 (68.75%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R   L+ ++++  + ILFIDE+HT+IG+G    G     +D +NL+KP L  G+++ I STT  E    FEKD+ALARRFQ + I+EPS E+ V+I+ GL+ KYEAHH+ ++T +A+ AAV L+ +
Sbjct:  264 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ----VDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPA_ECO57 (ATP-dependent Clp protease ATP-binding subunit clpA OS=Escherichia coli O157:H7 GN=clpA PE=3 SV=1)

HSP 1 Score: 120.168 bits (300), Expect = 1.125e-26
Identity = 59/128 (46.09%), Postives = 88/128 (68.75%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R   L+ ++++  + ILFIDE+HT+IG+G    G     +D +NL+KP L  G+++ I STT  E    FEKD+ALARRFQ + I+EPS E+ V+I+ GL+ KYEAHH+ ++T +A+ AAV L+ +
Sbjct:  264 EKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQ----VDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVK 387          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_LACPL (Chaperone protein clpB OS=Lactobacillus plantarum GN=clpB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26
Identity = 64/129 (49.61%), Postives = 87/129 (67.44%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI+KS G +I+FIDE+H ++G+G      +G+ +D  NLLKP L RGEL  I +TT DE+R   EKDKAL RRFQ VL++EPS ED + IL GL+E++E HH  +    A+ AA  LS R
Sbjct:  258 EERLKAVLKEIKKSDGQIIMFIDEIHNIVGAGKT----EGS-MDAGNLLKPMLARGELHLIGATTLDEYRQYMEKDKALERRFQKVLVAEPSVEDTISILRGLKERFEIHHGVRIHDNALVAAAKLSDR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_GEOSL (Chaperone protein clpB OS=Geobacter sulfurreducens GN=clpB PE=3 SV=1)

HSP 1 Score: 119.783 bits (299), Expect = 1.470e-26
Identity = 67/129 (51.94%), Postives = 83/129 (64.34%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +I E+ KS G VILFIDE+HTL+G+G          +D SN+LKP+L RGEL CI +TT +E+R   EKD AL RRFQ V   EPS ED + IL GL+EKYE +H  +    AI AA  LS R
Sbjct:  258 EERLKAVIREVAKSEGKVILFIDELHTLVGAGAAEGA-----MDASNMLKPALARGELHCIGATTLNEYRKYIEKDAALERRFQQVYTGEPSVEDTIAILRGLKEKYENYHGIRIKDSAIIAAATLSDR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_DEIRA (Chaperone protein clpB OS=Deinococcus radiodurans GN=clpB PE=3 SV=2)

HSP 1 Score: 119.398 bits (298), Expect = 1.920e-26
Identity = 64/129 (49.61%), Postives = 89/129 (68.99%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +I E+ KS G++ILF+DE+HT++G+G      +G+  D  N+LKP+L RGEL  I +TT DE+R + EKD AL RRFQPV + EPS ED + IL G++E+Y+ HHN + T  A+ AA  LS R
Sbjct:  248 EERLKGVIDEVVKSAGEIILFVDEIHTIVGAGKT----EGSP-DAGNMLKPALARGELHLIGATTLDEYR-EIEKDAALERRFQPVFVDEPSVEDTISILRGIKERYQVHHNVEITDPALVAAATLSNR 370          

HSP 2 Score: 76.2554 bits (186), Expect = 1.864e-13
Identity = 44/101 (43.56%), Postives = 63/101 (62.38%), Query Frame = 2
Query:  389 QGSRLKYDDVVASMGDTSEIVVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            + +RL+Y ++ A   D  ++  E  L SA  +     V  +DIAAV S W+GIPV ++   ER  L+ LEEQL  RVIGQD A+ ++S A++R+R GL DP
Sbjct:  488 EAARLEYGELPALEKDVQDL--EKKLKSA--EFAHMEVTEEDIAAVVSRWTGIPVSKLMEGEREKLLHLEEQLHGRVIGQDRAIVSVSDAIRRARAGLNDP 584          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_MEIRU (Chaperone protein clpB OS=Meiothermus ruber GN=clpB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26
Identity = 65/130 (50.00%), Postives = 87/130 (66.92%), Query Frame = 3
Query:    3 EARVTTLISE-IQKSGDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +I E +Q +G +ILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL  I +TT DE+R + EKD AL RRFQPV + EPS E+ V IL G++EKYE HH  + +  A+ AA  LS R
Sbjct:  248 EERLKAVIQETVQSAGQIILFIDEIHTVVGAG------KAEGAVDAGNMLKPALARGELHLIGATTLDEYR-EIEKDPALERRFQPVFVDEPSLEETVSILRGIKEKYEVHHGVRISDPALIAAAQLSHR 370          

HSP 2 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 34/65 (52.31%), Postives = 50/65 (76.92%), Query Frame = 2
Query:  497 VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            +V  +DIAA+ S W+GIPV ++   ER  L+ LE++L KRV+GQDEA+ A++ A++R+R GLKDP
Sbjct:  520 MVTEEDIAAIVSRWTGIPVAKLMEGEREKLLRLEDELHKRVVGQDEAIVAVADAIRRARAGLKDP 584          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_CORDI (Chaperone protein clpB OS=Corynebacterium diphtheriae GN=clpB PE=3 SV=1)

HSP 1 Score: 119.013 bits (297), Expect = 2.507e-26
Identity = 61/129 (47.29%), Postives = 85/129 (65.89%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI+ + G++I FIDE+HT++G+G  G     + +D  N++KP L RGEL+ + +TT DE+R   EKD AL RRFQ V + EPS EDAV IL GL+E+YE HH  +    A+ AA  LS R
Sbjct:  257 EERLKAVLDEIKSAEGEIITFIDELHTIVGAGATG----DSAMDAGNMIKPLLARGELRLVGATTLDEYRKYIEKDAALERRFQQVFVGEPSVEDAVGILRGLKERYEVHHGVRIQDSALVAAATLSDR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_XYLFT (Chaperone protein clpB OS=Xylella fastidiosa (strain Temecula1 / ATCC 700964) GN=clpB PE=3 SV=1)

HSP 1 Score: 118.627 bits (296), Expect = 3.275e-26
Identity = 65/130 (50.00%), Postives = 86/130 (66.15%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++++ K+ G VILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL CI +TT DE+R   EKD AL RRFQ V + EP+ ED + IL GL+EKY  HH  + T  AI AA  LS R
Sbjct:  256 EERLKGVLNDLAKNEGRVILFIDELHTMVGAG------KAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKEKYALHHGVEITDPAIVAAATLSNR 379          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB1_SYNE71.125e-2648.84Chaperone protein clpB 1 OS=Synechococcus elongatu... [more]
CLPA_ECOLI1.125e-2646.09ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_ECOL61.125e-2646.09ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPA_ECO571.125e-2646.09ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_LACPL1.470e-2649.61Chaperone protein clpB OS=Lactobacillus plantarum ... [more]
CLPB_GEOSL1.470e-2651.94Chaperone protein clpB OS=Geobacter sulfurreducens... [more]
CLPB_DEIRA1.920e-2649.61Chaperone protein clpB OS=Deinococcus radiodurans ... [more]
CLPB_MEIRU2.507e-2650.00Chaperone protein clpB OS=Meiothermus ruber GN=clp... [more]
CLPB_CORDI2.507e-2647.29Chaperone protein clpB OS=Corynebacterium diphther... [more]
CLPB_XYLFT3.275e-2650.00Chaperone protein clpB OS=Xylella fastidiosa (stra... [more]

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Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
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