CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_LISIN (Chaperone protein clpB OS=Listeria innocua GN=clpB PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 4.277e-26
Identity = 61/129 (47.29%), Postives = 83/129 (64.34%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+++S G ++LFIDE+HT++G+G          +D  N+LKP L RGEL CI +TT DE+R   EKD AL RRFQ VL+ EP+ ED V IL GL+E++E HH       A+ AA  LS R
Sbjct:  258 EERLKAVLQEVKQSDGQILLFIDEIHTIVGAGKTDGA-----MDAGNMLKPMLARGELHCIGATTLDEYRQYIEKDAALERRFQKVLVPEPTVEDTVSILRGLKERFEIHHGVNIHDNALVAAASLSNR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPL_STAAW (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain MW2) GN=clpL PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E  +  LI  ++ S + +LF DE+H +IGSG  G  +   GL  S++LKP+L RGE+  I +TTQDE+R    KD AL RRF  VL++EPS +D V IL G+REK+E HH  K   + + A V LS
Sbjct:  176 EENIQKLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGL--SDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLS 299          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPL_STAAS (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain MSSA476) GN=clpL PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E  +  LI  ++ S + +LF DE+H +IGSG  G  +   GL  S++LKP+L RGE+  I +TTQDE+R    KD AL RRF  VL++EPS +D V IL G+REK+E HH  K   + + A V LS
Sbjct:  176 EENIQKLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGL--SDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLS 299          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPL_STAAN (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain N315) GN=clpL PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E  +  LI  ++ S + +LF DE+H +IGSG  G  +   GL  S++LKP+L RGE+  I +TTQDE+R    KD AL RRF  VL++EPS +D V IL G+REK+E HH  K   + + A V LS
Sbjct:  176 EENIQKLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGL--SDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLS 299          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPL_STAAM (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=clpL PE=1 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E  +  LI  ++ S + +LF DE+H +IGSG  G  +   GL  S++LKP+L RGE+  I +TTQDE+R    KD AL RRF  VL++EPS +D V IL G+REK+E HH  K   + + A V LS
Sbjct:  176 EENIQKLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGL--SDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLS 299          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPL_STAAC (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain COL) GN=clpL PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E  +  LI  ++ S + +LF DE+H +IGSG  G  +   GL  S++LKP+L RGE+  I +TTQDE+R    KD AL RRF  VL++EPS +D V IL G+REK+E HH  K   + + A V LS
Sbjct:  176 EENIQKLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGL--SDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLS 299          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPL_STAAB (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=clpL PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 58/126 (46.03%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E  +  L+  ++ S + +LF DE+H +IGSG  G  +   GL  S++LKP+L RGE+  I +TTQDE+R    KD AL RRF  VL++EPS +D V IL G+REK+E HH  K   + + A V LS
Sbjct:  176 EENIQKLVEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGL--SDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFETHHQVKLPDDVLKACVDLS 299          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPL_STAA8 (ATP-dependent Clp protease ATP-binding subunit clpL OS=Staphylococcus aureus (strain NCTC 8325) GN=clpL PE=2 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.586e-26
Identity = 59/126 (46.83%), Postives = 80/126 (63.49%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLS 380
            E  +  LI  ++ S + +LF DE+H +IGSG  G  +   GL  S++LKP+L RGE+  I +TTQDE+R    KD AL RRF  VL++EPS +D V IL G+REK+E HH  K   + + A V LS
Sbjct:  176 EENIQKLIEGVKSSQNAVLFFDEIHQIIGSGATGSDSGSKGL--SDILKPALSRGEISIIGATTQDEYRNNILKDAALTRRFNEVLVNEPSAKDTVEILKGIREKFEEHHQVKLPDDVLKACVDLS 299          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLP_TRYBB (Heat shock protein 100 OS=Trypanosoma brucei brucei GN=HSP100 PE=3 SV=1)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 59/129 (45.74%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGD-VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ ++++E+++S + VILFIDE+H ++G+G       G  +D +NLLKP L RGEL+ I +TT +E+RT  EKD A  RRF PV ++EPS E+ + IL GL+++YEAHH  + T  A+  A  L+ R
Sbjct:  254 EERLKSVLNEVKESSNGVILFIDEIHLVLGAG-----KSGGSMDAANLLKPMLARGELRTIGATTLEEYRTYVEKDAAFERRFMPVYVTEPSVEECISILRGLKDRYEAHHGVQITDNAVVVAAQLANR 377          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_FUSNN (Chaperone protein clpB OS=Fusobacterium nucleatum subsp. nucleatum GN=clpB PE=3 SV=2)

HSP 1 Score: 117.472 bits (293), Expect = 7.295e-26
Identity = 62/130 (47.69%), Postives = 89/130 (68.46%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+++S G++ILFIDE+HT++G+G      KG G LD  N+LKP L RGEL+ I +TT DE+R   EKD AL RRFQ +L++EP+ +D + IL GL++K+E +H  + T  AI  A  LS R
Sbjct:  254 EERMKGVLKEVEESNGNIILFIDEIHTIVGAG------KGEGSLDAGNMLKPMLARGELRVIGATTIDEYRKYIEKDPALERRFQTILVNEPNVDDTISILRGLKDKFETYHGVRITDTAIVEAATLSQR 377          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB_LISIN4.277e-2647.29Chaperone protein clpB OS=Listeria innocua GN=clpB... [more]
CLPL_STAAW5.586e-2646.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAS5.586e-2646.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAN5.586e-2646.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAM5.586e-2646.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAC5.586e-2646.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAAB5.586e-2646.03ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPL_STAA85.586e-2646.83ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLP_TRYBB7.295e-2645.74Heat shock protein 100 OS=Trypanosoma brucei bruce... [more]
CLPB_FUSNN7.295e-2647.69Chaperone protein clpB OS=Fusobacterium nucleatum ... [more]

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Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
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