CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_LACLM (Chaperone protein clpB OS=Lactococcus lactis subsp. cremoris (strain MG1363) GN=clpB PE=2 SV=3)

HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25
Identity = 62/129 (48.06%), Postives = 87/129 (67.44%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++E++K+ G +ILFIDE+HT++G+G      +G+ +D  NLLKP L RGEL  I +TT DE+R   E DKAL RRFQ VL++EP+ ED + IL GL+E++E HH       A+ AA  LS R
Sbjct:  258 EERLKAVLNEVKKADGQIILFIDELHTIVGAGKT----EGS-MDAGNLLKPMLARGELHLIGATTLDEYRKYMETDKALERRFQKVLVTEPTVEDTISILRGLKERFEIHHGVTIHDNALVAAATLSNR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_BORPE (Chaperone protein clpB OS=Bordetella pertussis GN=clpB PE=3 SV=1)

HSP 1 Score: 115.546 bits (288), Expect = 2.772e-25
Identity = 64/130 (49.23%), Postives = 82/130 (63.08%), Query Frame = 3
Query:    3 EARVTTLISEI-QKSGDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+ Q  G  I+FIDE+HT+ G+G      K  G +D  N+LKP+L RGEL CI +TT DE+R   EKD AL RRFQ VL+ EP  E  + IL GL+E+YE HH  + T  AI AA  LS R
Sbjct:  255 EERLKAVLKELAQDDGQNIVFIDELHTMAGAG------KAEGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVLVGEPDVESTIAILRGLQERYELHHGVEITDPAIVAAAELSHR 378          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_CORGL (Chaperone protein clpB OS=Corynebacterium glutamicum GN=clpB PE=1 SV=1)

HSP 1 Score: 115.161 bits (287), Expect = 3.621e-25
Identity = 58/129 (44.96%), Postives = 85/129 (65.89%), Query Frame = 3
Query:    3 EARVTTLISEIQ-KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI+  +G+V+ FIDE+HT++G+G  G     + +D  N++KP L RGEL+ + +TT +E+R   EKD AL RRFQ V + EP+ EDA+ IL GL+E+YE HH  +    A+ AA  LS R
Sbjct:  257 EERLKAVLDEIKGANGEVVTFIDELHTIVGAGASGE----SAMDAGNMIKPLLARGELRLVGATTLNEYRKYIEKDAALERRFQQVYVGEPTVEDAIGILRGLKERYEVHHGVRIQDSALVAAAELSNR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_COREF (Chaperone protein clpB OS=Corynebacterium efficiens GN=clpB PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.729e-25
Identity = 58/129 (44.96%), Postives = 84/129 (65.12%), Query Frame = 3
Query:    3 EARVTTLISEIQ-KSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI+  +G+++ FIDE+HT++G+G  G     + +D  N++KP L RGEL+ + +TT +E+R   EKD AL RRFQ V + EPS ED V IL GL+E+YE HH  +    A+ AA  LS R
Sbjct:  257 EERLKAVLDEIKGANGEIVTFIDELHTIVGAGASGE----SAMDAGNMIKPLLARGELRLVGATTLNEYRKYIEKDTALERRFQQVYVGEPSVEDTVGILRGLKERYEVHHGVRIQDSALVAAAELSHR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_STAES (Chaperone protein clpB OS=Staphylococcus epidermidis (strain ATCC 12228) GN=clpB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 60/129 (46.51%), Postives = 82/129 (63.57%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+++S G +ILFIDE+H L+G+G          +D  N+LKP L RGEL CI +TT +E+R   EKD AL RRFQ V +SEP  ED + IL GL+E+YE +H  +    A+ AA  LS R
Sbjct:  255 EERLKAVLKEVKESEGRIILFIDEIHMLVGAGKTDGA-----MDAGNMLKPMLARGELHCIGATTLNEYREYIEKDSALERRFQKVGVSEPDVEDTISILRGLKERYEVYHGVRIQDRALVAAAELSDR 378          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_STAEQ (Chaperone protein clpB OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A) GN=clpB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 60/129 (46.51%), Postives = 82/129 (63.57%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+++S G +ILFIDE+H L+G+G          +D  N+LKP L RGEL CI +TT +E+R   EKD AL RRFQ V +SEP  ED + IL GL+E+YE +H  +    A+ AA  LS R
Sbjct:  255 EERLKAVLKEVKESEGRIILFIDEIHMLVGAGKTDGA-----MDAGNMLKPMLARGELHCIGATTLNEYREYIEKDSALERRFQKVGVSEPDVEDTISILRGLKERYEVYHGVRIQDRALVAAAELSDR 378          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_MYCGE (Chaperone protein clpB OS=Mycoplasma genitalium GN=clpB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 57/129 (44.19%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ T++ ++++S G +ILFIDE+H ++G   +GR +    +DI+N+LKP L RGE++ I +TT  E+R   EKD AL RRFQ +LI+EPS ++A+ I+ GL+ ++E  HN      A+ AAV +S R
Sbjct:  110 EKRINTILKQVKESNGRIILFIDEIHQIVG---LGRNSSSGAMDIANILKPMLARGEIKVIGATTLKEYREYIEKDGALERRFQKILINEPSSQEALTIMRGLKTRWELFHNITIFDSALVAAVEMSTR 235          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_BACCR (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=clpB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSG-TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++EI+KS G ++LFIDE+HT++G+G T G       +D  N+LKP L RGEL CI +TT DE+R   EKD AL RRFQ VL  EP+ ED + IL GL+E++E +H       AI AA  LS R
Sbjct:  259 EERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEG------AMDAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDR 382          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_BACC1 (Chaperone protein clpB OS=Bacillus cereus (strain ATCC 10987) GN=clpB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSG-TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++EI+KS G ++LFIDE+HT++G+G T G       +D  N+LKP L RGEL CI +TT DE+R   EKD AL RRFQ VL  EP+ ED + IL GL+E++E +H       AI AA  LS R
Sbjct:  259 EERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEG------AMDAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDR 382          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_BACAN (Chaperone protein clpB OS=Bacillus anthracis GN=clpB PE=3 SV=1)

HSP 1 Score: 114.39 bits (285), Expect = 6.176e-25
Identity = 64/130 (49.23%), Postives = 85/130 (65.38%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSG-TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++EI+KS G ++LFIDE+HT++G+G T G       +D  N+LKP L RGEL CI +TT DE+R   EKD AL RRFQ VL  EP+ ED + IL GL+E++E +H       AI AA  LS R
Sbjct:  259 EERLQAVLNEIKKSEGRILLFIDELHTIVGAGKTEG------AMDAGNMLKPMLARGELHCIGATTLDEYRKYIEKDPALERRFQQVLAEEPTVEDTISILRGLKERFEIYHGVNIHDRAIVAASVLSDR 382          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB_LACLM2.772e-2548.06Chaperone protein clpB OS=Lactococcus lactis subsp... [more]
CLPB_BORPE2.772e-2549.23Chaperone protein clpB OS=Bordetella pertussis GN=... [more]
CLPB_CORGL3.621e-2544.96Chaperone protein clpB OS=Corynebacterium glutamic... [more]
CLPB_COREF4.729e-2544.96Chaperone protein clpB OS=Corynebacterium efficien... [more]
CLPB_STAES6.176e-2546.51Chaperone protein clpB OS=Staphylococcus epidermid... [more]
CLPB_STAEQ6.176e-2546.51Chaperone protein clpB OS=Staphylococcus epidermid... [more]
CLPB_MYCGE6.176e-2544.19Chaperone protein clpB OS=Mycoplasma genitalium GN... [more]
CLPB_BACCR6.176e-2549.23Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_BACC16.176e-2549.23Chaperone protein clpB OS=Bacillus cereus (strain ... [more]
CLPB_BACAN6.176e-2549.23Chaperone protein clpB OS=Bacillus anthracis GN=cl... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
back to top