CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPV1_PSEAE (Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 PE=1 SV=1)

HSP 1 Score: 107.071 bits (266), Expect = 9.860e-23
Identity = 60/129 (46.51%), Postives = 82/129 (63.57%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGD-VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +I ++Q S   +ILFIDE HTL+G+G    G  GTG D +NLLKP+L RG L+ +A+TT  E++   EKD AL RRFQ V + EPS+  A+ ++ G+    E HH  +   EA+ AAV LS R
Sbjct:  287 EQRLRQVIEDVQSSEKPIILFIDEAHTLVGAG----GAAGTG-DAANLLKPALARGTLRTVAATTWAEYKKHIEKDPALTRRFQVVQVDEPSEHKAILMMRGVASTMEKHHQVQILDEALEAAVRLSHR 410          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: HS104_YEAST (Heat shock protein 104 OS=Saccharomyces cerevisiae GN=HSP104 PE=1 SV=2)

HSP 1 Score: 96.6709 bits (239), Expect = 1.333e-19
Identity = 53/129 (41.09%), Postives = 78/129 (60.47%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGD-VILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R   ++ EI++S   ++LFIDE+H L+G+G           D +N+LKP+L RG+L+ I +TT +E+R+  EKD A  RRFQ + ++EPS    V IL GL+ KYE HH  +    A+  A  L+ R
Sbjct:  262 EERFKGVLKEIEESKTLIVLFIDEIHMLMGNGKD---------DAANILKPALSRGQLKVIGATTNNEYRSIVEKDGAFERRFQKIEVAEPSVRQTVAILRGLQPKYEIHHGVRILDSALVTAAQLAKR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPL_LACLA (ATP-dependent Clp protease ATP-binding subunit clpL OS=Lactococcus lactis subsp. lactis GN=clpL PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.969e-19
Identity = 52/129 (40.31%), Postives = 82/129 (63.57%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGR-GELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E  +  L+ E++ +G++ILFIDE+H ++G+G +  G +  GL  ++++KP L    +L  I +TTQDE+R    K+ ALARRF  V+I+EP+  D +RIL G++E YE HH+     +   AAV  S +
Sbjct:  231 EENIKQLVEEVKAAGNIILFIDEIHQILGTGALA-GEEVKGL--ADIIKPLLCHVAKLSVIGATTQDEYRNTILKNAALARRFNDVVINEPTAADTLRILQGIKELYEKHHHVVLPDDEKKAAVDYSIK 356          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_STRMU (Chaperone protein clpB OS=Streptococcus mutans GN=clpB PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.282e-18
Identity = 50/129 (38.76%), Postives = 79/129 (61.24%), Query Frame = 3
Query:    3 EARVTTLISEI-QKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R   L+++I   +G +ILFIDE+H+++ +G      +G+ +D +++LKP L RG+++ I STT  E+R   E D+AL RRFQ +L+ EP  +  + IL GL+  YE  H  +   + + AA  LS R
Sbjct:  258 EERFKALLNDIIDSNGQIILFIDEIHSIVSAGRT----EGS-VDAASILKPLLARGKIRIIGSTTHAEYRESIEYDRALERRFQRILVHEPDLDYTMEILKGLKPIYENFHGVRLEEDGLEAAASLSKR 381          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB1_CHLTE (Probable chaperone protein clpB 1 OS=Chlorobium tepidum GN=clpB1 PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 7.830e-12
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 2
Query:  512 DIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKD 688
            DIA + S W+GIPV ++   ER  L+G+E +L +RV+GQDEAV A+S AVKRSR G+ D
Sbjct:  108 DIADIVSRWTGIPVSKMLQSERQKLLGIESELHRRVVGQDEAVRAVSDAVKRSRAGMGD 166          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPV1_PSEAE9.860e-2346.51Protein clpV1 OS=Pseudomonas aeruginosa GN=clpV1 P... [more]
HS104_YEAST1.333e-1941.09Heat shock protein 104 OS=Saccharomyces cerevisiae... [more]
CLPL_LACLA2.969e-1940.31ATP-dependent Clp protease ATP-binding subunit clp... [more]
CLPB_STRMU3.282e-1838.76Chaperone protein clpB OS=Streptococcus mutans GN=... [more]
CLPB1_CHLTE7.830e-1255.93Probable chaperone protein clpB 1 OS=Chlorobium te... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
back to top