CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_VIBCH (Chaperone protein clpB OS=Vibrio cholerae GN=clpB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28
Identity = 66/130 (50.77%), Postives = 91/130 (70.00%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ ++++E+ K  G++ILFIDE+HT++G+G      KG G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ VL+ EP+ ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  256 EERLKSVLNELAKEEGNIILFIDELHTMVGAG------KGEGSMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDPALERRFQKVLVDEPTVEDTIAILRGLKERYELHHHVEITDPAIVAAASLSHR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_RICFE (Chaperone protein clpB OS=Rickettsia felis GN=clpB PE=3 SV=2)

HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28
Identity = 67/129 (51.94%), Postives = 87/129 (67.44%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI++S G++ILFIDE+H L+G+G          +D SNLLKP L RGEL CI +TT DE+R   EKD ALARRFQPV +SEP+  D + IL G++EKYE HH  + +  AI AA  LS R
Sbjct:  257 EERLKAVLGEIKESSGEIILFIDELHLLVGTGKTDGA-----MDASNLLKPMLARGELHCIGATTLDEYRKYIEKDAALARRFQPVYVSEPTASDTISILRGIKEKYELHHAVRISDSAIVAAATLSNR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_RICBR (Chaperone protein clpB OS=Rickettsia bellii (strain RML369-C) GN=clpB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28
Identity = 67/129 (51.94%), Postives = 87/129 (67.44%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI++S G++ILFIDE+H L+G+G          +D SNLLKP L RGEL CI +TT DE+R   EKD A ARRFQPV +SEP+ ED + IL G++EKYE HH  + +  AI AA  LS R
Sbjct:  257 EERLKAVLGEIKESSGEIILFIDELHLLVGTGKTDGA-----MDASNLLKPMLARGELHCIGATTLDEYRKYIEKDAAFARRFQPVYVSEPTVEDTISILRGIKEKYELHHAVRISDSAIVAAATLSNR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_PSEPK (Chaperone protein clpB OS=Pseudomonas putida (strain KT2440) GN=clpB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28
Identity = 67/130 (51.54%), Postives = 89/130 (68.46%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ +L++E+ K  G +ILFIDE+HT++G+G      KG G +D  N+LKP+L RGEL C+ +TT +E+R   EKD AL RRFQ VL+ EPS+ED + IL GL+E+YE HH    T  AI AA  LS R
Sbjct:  256 EERLKSLLNELSKQEGQIILFIDELHTMVGAG------KGEGAMDAGNMLKPALARGELHCVGATTLNEYRQFIEKDAALERRFQKVLVEEPSEEDTIAILRGLKERYEVHHKVAITDGAIIAAAKLSHR 379          

HSP 2 Score: 67.781 bits (164), Expect = 6.629e-11
Identity = 34/64 (53.12%), Postives = 45/64 (70.31%), Query Frame = 2
Query:  500 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            V  ++IA V S W+GIPV ++   ER  L+ +EE L +RVIGQ EAV A++ AV+RSR GL DP
Sbjct:  531 VTEEEIAEVVSKWTGIPVAKMLEGEREKLLKMEELLHQRVIGQSEAVTAVANAVRRSRAGLSDP 594          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_PROMM (Chaperone protein clpB OS=Prochlorococcus marinus (strain MIT 9313) GN=clpB PE=3 SV=1)

HSP 1 Score: 126.716 bits (317), Expect = 1.202e-28
Identity = 63/129 (48.84%), Postives = 86/129 (66.67%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+  S G ++LFIDE+HT++G+G  G       +D SNLLKP L RGEL+CI +TT DEHR   EKD AL RRFQ VL+ +P+ +D + IL GL+E+YE HH  +    A+ AA  LS+R
Sbjct:  257 EERLKAVLKEVTASEGQIVLFIDEIHTVVGAGATGGA-----MDASNLLKPMLARGELRCIGATTLDEHRQHIEKDPALERRFQQVLVDQPTVQDTISILRGLKERYEVHHGVRIADNALVAAAVLSSR 380          

HSP 2 Score: 68.5514 bits (166), Expect = 3.886e-11
Identity = 33/64 (51.56%), Postives = 46/64 (71.88%), Query Frame = 2
Query:  500 VGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            V  DDIA V + W+GIPV ++   E   L+GLE +L +RVIGQ++AV A++ A++RSR GL DP
Sbjct:  537 VTEDDIADVIAKWTGIPVAKLVQSEMEKLLGLEAELHQRVIGQEQAVQAVADAIQRSRAGLSDP 600          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_BDEBA (Chaperone protein clpB OS=Bdellovibrio bacteriovorus GN=clpB PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.570e-28
Identity = 69/130 (53.08%), Postives = 88/130 (67.69%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSG-TVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +I E+  S G +ILFIDE+HTL+G+G T G       +D   LLKP+L RGEL+CI +TT DE+R   EKD AL RRFQ V++ EPS EDA+ IL GL+EKYE HH  + T  A+ +AV LS R
Sbjct:  252 EDRLKAVIKEVTSSDGQIILFIDELHTLVGAGKTEG------AMDAGQLLKPALARGELRCIGATTLDEYRKYIEKDAALERRFQTVMVEEPSVEDAITILRGLKEKYEVHHGIRITDAALVSAVKLSHR 375          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB2_CHLTE (Probable chaperone protein clpB 2 OS=Chlorobium tepidum GN=clpB2 PE=3 SV=1)

HSP 1 Score: 126.331 bits (316), Expect = 1.570e-28
Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  L+ E+Q S G+VILFIDE+H L+G+G+     +G+ +D +N+LKP+L RGEL+CI +TT DE+R   EKD AL RRFQ V++ +PS ED V IL GL+EKYE HH  +    A+ AA  LS R
Sbjct:  259 EERLKALVKEVQASDGEVILFIDELHLLVGAGSA----EGS-MDAANILKPALARGELRCIGATTLDEYRKHIEKDAALERRFQTVIVDQPSVEDTVSILRGLKEKYEIHHGVRIKDAALVAAAELSNR 382          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_SHEON (Chaperone protein clpB OS=Shewanella oneidensis GN=clpB PE=3 SV=1)

HSP 1 Score: 125.946 bits (315), Expect = 2.051e-28
Identity = 66/130 (50.77%), Postives = 90/130 (69.23%), Query Frame = 3
Query:    3 EARVTTLISEI-QKSGDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++E+ Q+ G VILFIDE+HT++G+G      KG G +D  N+LKP+L RG+L C+ +TT DE+R   EKD AL RRFQ VL+ EPS ED + IL GL+E+YE HH+ + T  AI AA  +S R
Sbjct:  256 EERLKAVLNELAQEEGQVILFIDELHTMVGAG------KGDGAMDAGNMLKPALARGDLHCVGATTLDEYRQYIEKDAALERRFQKVLVDEPSVEDTIAILRGLKERYELHHHVEITDPAIVAAATMSHR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB1_SYNPX (Chaperone protein clpB 1 OS=Synechococcus sp. (strain WH8102) GN=clpB1 PE=3 SV=2)

HSP 1 Score: 125.946 bits (315), Expect = 2.051e-28
Identity = 63/129 (48.84%), Postives = 85/129 (65.89%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+  S G ++LFIDE+HT++G+G       G  +D SNLLKP L RGEL+CI +TT DEHR   EKD AL RRFQ VL+ +P+  D + IL GL+E+YE HH  +    A+ AA  LS+R
Sbjct:  257 EERLKAVLKEVTTSDGQIVLFIDEIHTVVGAGA-----SGGAMDASNLLKPMLARGELRCIGATTLDEHRQHIEKDPALERRFQQVLVDQPTVPDTISILRGLKERYEVHHGVRIADSALVAAAMLSSR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPC_GUITH (ATP-dependent Clp protease ATP-binding subunit clpA homolog OS=Guillardia theta GN=clpC PE=3 SV=1)

HSP 1 Score: 125.561 bits (314), Expect = 2.679e-28
Identity = 62/122 (50.82%), Postives = 85/122 (69.67%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAA 368
            E R+  +I EI+ + +VIL IDEVHTLIG+G          +D +N+LKP+L RGE+QCI +TT +E+R   EKD AL RRFQPV++ EPS E+ + IL GLR++YE HH    + EA++AA
Sbjct:  257 EERLKKIIDEIRVANNVILVIDEVHTLIGAGAAEGA-----IDAANILKPALARGEMQCIGATTLEEYRKHIEKDSALERRFQPVMVGEPSVEETIEILYGLRDRYEKHHKLVISDEALSAA 373          

HSP 2 Score: 75.485 bits (184), Expect = 3.179e-13
Identity = 36/81 (44.44%), Postives = 54/81 (66.67%), Query Frame = 2
Query:  449 VVESSLPSASDDDEPAVVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            +  S      +  E +VV  +DIA + + W+GIPV ++T  E   L+ +EE L  R+IGQDEAV A+S+A++R+RVGLK+P
Sbjct:  455 IAHSKKGDEENTKEVSVVTEEDIAQIVAAWTGIPVNKMTRSESEKLLQMEETLHGRIIGQDEAVVAVSKAIRRARVGLKNP 535          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB_VIBCH1.202e-2850.77Chaperone protein clpB OS=Vibrio cholerae GN=clpB ... [more]
CLPB_RICFE1.202e-2851.94Chaperone protein clpB OS=Rickettsia felis GN=clpB... [more]
CLPB_RICBR1.202e-2851.94Chaperone protein clpB OS=Rickettsia bellii (strai... [more]
CLPB_PSEPK1.202e-2851.54Chaperone protein clpB OS=Pseudomonas putida (stra... [more]
CLPB_PROMM1.202e-2848.84Chaperone protein clpB OS=Prochlorococcus marinus ... [more]
CLPB_BDEBA1.570e-2853.08Chaperone protein clpB OS=Bdellovibrio bacteriovor... [more]
CLPB2_CHLTE1.570e-2851.94Probable chaperone protein clpB 2 OS=Chlorobium te... [more]
CLPB_SHEON2.051e-2850.77Chaperone protein clpB OS=Shewanella oneidensis GN... [more]
CLPB1_SYNPX2.051e-2848.84Chaperone protein clpB 1 OS=Synechococcus sp. (str... [more]
CLPC_GUITH2.679e-2850.82ATP-dependent Clp protease ATP-binding subunit clp... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
back to top