CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_HELHP (Chaperone protein clpB OS=Helicobacter hepaticus GN=clpB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.968e-28
Identity = 61/128 (47.66%), Postives = 92/128 (71.88%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E++K+G++ILFIDE+HT++G+G     ++G+ +D +N+LKP+L RGEL  I +TT  E+R  FEKD AL RRFQP+ ++EPS  +A++IL G++   EAHHN   T  A+ AA  LS+R
Sbjct:  256 EERLKNVVDEVKKAGNIILFIDEIHTIVGAGA----SEGS-MDAANILKPALARGELHTIGATTLKEYRKYFEKDAALTRRFQPINVNEPSINEALQILRGIKPNLEAHHNVNITDAALVAAAKLSSR 378          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_HAEIN (Chaperone protein clpB OS=Haemophilus influenzae GN=clpB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.968e-28
Identity = 66/129 (51.16%), Postives = 84/129 (65.12%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++E+ K  G VILFIDE+HT++G+G          +D  NLLKPSL RGEL C+ +TT DE+R   EKD AL RRFQ V + EPS ED + IL GL+E+YE HH+   T  AI AA  LS R
Sbjct:  256 EERLKAVLNELSKEEGRVILFIDEIHTMVGAGKTDGA-----MDAGNLLKPSLARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVDEPSVEDTIAILRGLKERYEIHHHVDITDPAIVAAATLSHR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB1_ANASP (Chaperone protein clpB 1 OS=Anabaena sp. (strain PCC 7120) GN=clpB1 PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.968e-28
Identity = 64/129 (49.61%), Postives = 89/129 (68.99%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+ +S G+++LFIDE+HT++G+G+    N+   +D  NLLKP L RGEL+CI +TT DE R   EKD AL RRFQ V + +PS E+ + IL GL+E+YE HHN K +  A+ AA  LSAR
Sbjct:  258 EDRLKAVLREVTESNGNIVLFIDELHTVVGTGS----NQQGAMDAGNLLKPMLARGELRCIGATTLDEFRKFIEKDAALERRFQQVYVDQPSVENTISILRGLKERYEVHHNVKISDSALVAAATLSAR 382          

HSP 2 Score: 68.1662 bits (165), Expect = 5.076e-11
Identity = 31/60 (51.67%), Postives = 43/60 (71.67%), Query Frame = 2
Query:  512 DIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            DIA + + W+GIPV ++   ER  L+ LE  L +RVIGQ EAV A+S A++R+R G+KDP
Sbjct:  544 DIAEIVAKWTGIPVNRLLESERQKLLQLESHLHQRVIGQQEAVEAVSAAIRRARAGMKDP 603          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_TREDE (Chaperone protein clpB OS=Treponema denticola GN=clpB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28
Identity = 70/129 (54.26%), Postives = 90/129 (69.77%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +ISE+QKS G VILFIDE+HTL+G+G     ++G+ +D SNLLKP+L RGEL+ I +TT +E+R   EKD AL RRFQ V   EP+ ED + IL GL+EKYE HH  +   EA+ AA  LS R
Sbjct:  256 EERLKAVISEVQKSEGRVILFIDELHTLVGAGA----SEGS-MDASNLLKPALARGELRAIGATTLNEYRKYIEKDAALERRFQQVYCPEPTVEDTIAILRGLQEKYEVHHGVRIRDEALIAAAVLSNR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_PASMU (Chaperone protein clpB OS=Pasteurella multocida GN=clpB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28
Identity = 65/129 (50.39%), Postives = 85/129 (65.89%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++E+ K  G VILFIDE+HT++G+G          +D  NLLKPSL RGEL C+ +TT DE+R   EKD AL RRFQ V + EP+ ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  255 EERLKAVLNELSKEEGRVILFIDEIHTMVGAGKTDGA-----MDAGNLLKPSLARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVGEPTVEDTIAILRGLKERYEIHHHVQITDPAIVAAATLSHR 378          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_PARUW (Chaperone protein clpB OS=Protochlamydia amoebophila (strain UWE25) GN=clpB PE=3 SV=1)

HSP 1 Score: 124.02 bits (310), Expect = 7.794e-28
Identity = 67/129 (51.94%), Postives = 90/129 (69.77%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ +I+KS G +ILFIDEVHTLIG+G          +D +NLLKP+L RG L CI +TT +E++   EKD AL RRFQ VL++EP+ ED++ IL GLRE+YE +H    T  AI+AAV LS+R
Sbjct:  256 EERLKGILQDIEKSEGQIILFIDEVHTLIGAGATDGA-----MDAANLLKPALARGILHCIGATTLNEYQKYIEKDAALERRFQLVLVNEPTIEDSIAILRGLRERYEIYHGVHITESAIHAAVLLSSR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_WOLSU (Chaperone protein clpB OS=Wolinella succinogenes GN=clpB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 61/128 (47.66%), Postives = 93/128 (72.66%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E++K+G+VILFIDE+HT++G+G     ++G+ +D +N+LKP+L RGEL  I +TT  E+R  FEKD AL RRFQP+ ++EP+  +A++IL G++E+ EAHHN      A+ AA  LS+R
Sbjct:  256 EDRLKKVVEEVKKAGNVILFIDEIHTIVGAGA----SEGS-MDAANILKPALARGELHTIGATTLKEYRKYFEKDAALQRRFQPIFLNEPTINEALQILRGIKERLEAHHNVTIYDSALVAAAKLSSR 378          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_CLOPE (Chaperone protein clpB OS=Clostridium perfringens GN=clpB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 63/129 (48.84%), Postives = 85/129 (65.89%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ E+Q S G ++LFIDE+HT++G+G          +D  NL+KP L RGEL CI +TT DE+R   EKDKAL RRFQPV++ EP+ E+ V IL GL+E++E HH  +    AI AA  LS R
Sbjct:  261 EERLKAVLKEVQSSEGKILLFIDEIHTIVGAGKTDGA-----MDAGNLIKPMLARGELHCIGATTFDEYRQYIEKDKALERRFQPVIVEEPTVEETVSILRGLKERFEIHHGIRIHDSAIVAAAKLSHR 384          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_CHRVO (Chaperone protein clpB OS=Chromobacterium violaceum GN=clpB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 66/130 (50.77%), Postives = 85/130 (65.38%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++++ K  G  ++FIDE+HTL+G+G      K  G +D  N+LKP+L RGEL CI +TT DE+R   EKD AL RRFQ VL+ EPS ED + IL GL+EKYE HH    T  AI AA  LS R
Sbjct:  256 EERLKAVLNDLSKDDGQTLIFIDEIHTLVGAG------KADGAMDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVLVGEPSVEDTIAILRGLQEKYEIHHGVDITDPAIVAAAELSQR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_CHLPN (Chaperone protein clpB OS=Chlamydia pneumoniae GN=clpB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.018e-27
Identity = 65/129 (50.39%), Postives = 88/129 (68.22%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+ +++ +++   G+ I+FIDEVHTL+G+G          +D +NLLKP+L RG L CI +TT +E++   EKD AL RRFQP+ ++EPS EDAV IL GLREKYE  H  + T  A+NAAV LS R
Sbjct:  255 EERLKSVLKDVESGDGEHIIFIDEVHTLVGAGATDGA-----MDAANLLKPALARGTLHCIGATTLNEYQKYIEKDAALERRFQPIFVTEPSLEDAVFILRGLREKYEIFHGVRITEGALNAAVLLSYR 378          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB_HELHP5.968e-2847.66Chaperone protein clpB OS=Helicobacter hepaticus G... [more]
CLPB_HAEIN5.968e-2851.16Chaperone protein clpB OS=Haemophilus influenzae G... [more]
CLPB1_ANASP5.968e-2849.61Chaperone protein clpB 1 OS=Anabaena sp. (strain P... [more]
CLPB_TREDE7.794e-2854.26Chaperone protein clpB OS=Treponema denticola GN=c... [more]
CLPB_PASMU7.794e-2850.39Chaperone protein clpB OS=Pasteurella multocida GN... [more]
CLPB_PARUW7.794e-2851.94Chaperone protein clpB OS=Protochlamydia amoebophi... [more]
CLPB_WOLSU1.018e-2747.66Chaperone protein clpB OS=Wolinella succinogenes G... [more]
CLPB_CLOPE1.018e-2748.84Chaperone protein clpB OS=Clostridium perfringens ... [more]
CLPB_CHRVO1.018e-2750.77Chaperone protein clpB OS=Chromobacterium violaceu... [more]
CLPB_CHLPN1.018e-2750.39Chaperone protein clpB OS=Chlamydia pneumoniae GN=... [more]

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Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
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