CX295702

Overview
NameCX295702
Unique NameCX295702
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length710
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_SHIFL (Chaperone protein clpB OS=Shigella flexneri GN=clpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 65/130 (50.00%), Postives = 89/130 (68.46%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++++ K  G+VILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ V ++EPS ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  256 EERLKGVLNDLAKQEGNVILFIDELHTMVGAG------KADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_SALTY (Chaperone protein clpB OS=Salmonella typhimurium GN=clpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 65/130 (50.00%), Postives = 89/130 (68.46%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++++ K  G+VILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ V ++EPS ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  256 EERLKGVLNDLAKQEGNVILFIDELHTMVGAG------KADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_SALTI (Chaperone protein clpB OS=Salmonella typhi GN=clpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 65/130 (50.00%), Postives = 89/130 (68.46%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++++ K  G+VILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ V ++EPS ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  256 EERLKGVLNDLAKQEGNVILFIDELHTMVGAG------KADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_RALSO (Chaperone protein clpB OS=Ralstonia solanacearum GN=clpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 67/130 (51.54%), Postives = 85/130 (65.38%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++++I K  G  ILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL CI +TT DE+R   EKD AL RRFQ VL+ EPS E  + IL GL+EKYE HH  + T  AI AA  LS R
Sbjct:  255 EERLKAVLNDIAKEEGQTILFIDEIHTMVGAG------KAEGAIDAGNMLKPALARGELHCIGATTLDEYRKYIEKDAALERRFQKVLVDEPSVEATIAILRGLQEKYELHHGVEITDPAIVAAAELSHR 378          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_PROFR (Chaperone protein clpB (Fragment) OS=Propionibacterium freudenreichii subsp. shermanii GN=clpB PE=2 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 66/129 (51.16%), Postives = 89/129 (68.99%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++EI+ + G +I FIDE+HT++G+G     ++G+ +D SN+LKP L RGEL+ I +TT DE+R   EKD AL RRFQ V + EPS ED V IL GLRE+YEAHH  + T  A+ AA  LS R
Sbjct:  257 EERLKAVLNEIKSAEGQIITFIDELHTVVGAGA----SEGS-MDASNMLKPLLARGELRLIGATTLDEYREHIEKDPALERRFQQVYVGEPSVEDTVAILRGLRERYEAHHKVRITDSALVAAAQLSHR 380          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_ECOLI (Chaperone protein clpB OS=Escherichia coli (strain K12) GN=clpB PE=1 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 65/130 (50.00%), Postives = 89/130 (68.46%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++++ K  G+VILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ V ++EPS ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  256 EERLKGVLNDLAKQEGNVILFIDELHTMVGAG------KADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_ECOL6 (Chaperone protein clpB OS=Escherichia coli O6 GN=clpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 65/130 (50.00%), Postives = 89/130 (68.46%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++++ K  G+VILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ V ++EPS ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  256 EERLKGVLNDLAKQEGNVILFIDELHTMVGAG------KADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_ECO57 (Chaperone protein clpB OS=Escherichia coli O157:H7 GN=clpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 65/130 (50.00%), Postives = 89/130 (68.46%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTG-LDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  +++++ K  G+VILFIDE+HT++G+G      K  G +D  N+LKP+L RGEL C+ +TT DE+R   EKD AL RRFQ V ++EPS ED + IL GL+E+YE HH+ + T  AI AA  LS R
Sbjct:  256 EERLKGVLNDLAKQEGNVILFIDELHTMVGAG------KADGAMDAGNMLKPALARGELHCVGATTLDEYRQYIEKDAALERRFQKVFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHR 379          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_DICNO (Chaperone protein clpB OS=Dichelobacter nodosus GN=clpB PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 64/129 (49.61%), Postives = 87/129 (67.44%), Query Frame = 3
Query:    3 EARVTTLISEIQKS-GDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  ++ EI K+ G +ILFIDE+HT++G+G     ++G+ LD  N+LKP+L RG+L CI +TT DE+R   EKD AL RRFQ V++ EPS ED + IL  L+E+YE HH    T  A+ AA  LS R
Sbjct:  260 EERLKAVLDEITKADGQIILFIDEIHTMVGAGK----SEGS-LDAGNMLKPALARGDLHCIGATTLDEYRQYMEKDAALERRFQKVIVDEPSVEDTIAILRNLQERYEVHHGINITDPALVAAAQLSHR 383          
BLAST of CX295702 vs. ExPASy Swiss-Prot
Match: CLPB_AQUAE (Chaperone protein clpB OS=Aquifex aeolicus GN=clpB PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.962e-27
Identity = 60/128 (46.88%), Postives = 86/128 (67.19%), Query Frame = 3
Query:    3 EARVTTLISEIQKSGDVILFIDEVHTLIGSGTVGRGNKGTGLDISNLLKPSLGRGELQCIASTTQDEHRTQFEKDKALARRFQPVLISEPSQEDAVRILLGLREKYEAHHNCKFTLEAINAAVHLSAR 386
            E R+  L+ E+++ G+VILFIDE+HT++G+G          +D +N++KP+L RGE++ I +TT DE+R   EKD AL RRFQPV + EP++E  + IL GLR + E  H  K + EAI AAV L+ R
Sbjct:  390 EERLKALLDEVKEKGNVILFIDEIHTVVGAGAAEGA-----VDAANIMKPALARGEIRVIGATTVDEYRKYIEKDPALERRFQPVFVDEPTEEQTIEILKGLRPRLEQFHKVKISDEAIEAAVKLTKR 512          

HSP 2 Score: 69.3218 bits (168), Expect = 2.278e-11
Identity = 32/65 (49.23%), Postives = 47/65 (72.31%), Query Frame = 2
Query:  497 VVGPDDIAAVASLWSGIPVQQITADERMLLVGLEEQLXKRVIGQDEAVAAISRAVKRSRVGLKDP 691
            VV  DD+A V S W+GIPV ++  +E   L+ LE++L KRV+ Q+ AV A++ A++R+R GLKDP
Sbjct:  651 VVTWDDVAEVVSEWTGIPVSRLKEEEMQKLLKLEDELHKRVVDQEHAVKAVAEAIRRARAGLKDP 715          
The following BLAST results are available for this feature:
BLAST of CX295702 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 195
Match NameE-valueIdentityDescription
CLPB_SHIFL2.962e-2750.00Chaperone protein clpB OS=Shigella flexneri GN=clp... [more]
CLPB_SALTY2.962e-2750.00Chaperone protein clpB OS=Salmonella typhimurium G... [more]
CLPB_SALTI2.962e-2750.00Chaperone protein clpB OS=Salmonella typhi GN=clpB... [more]
CLPB_RALSO2.962e-2751.54Chaperone protein clpB OS=Ralstonia solanacearum G... [more]
CLPB_PROFR2.962e-2751.16Chaperone protein clpB (Fragment) OS=Propionibacte... [more]
CLPB_ECOLI2.962e-2750.00Chaperone protein clpB OS=Escherichia coli (strain... [more]
CLPB_ECOL62.962e-2750.00Chaperone protein clpB OS=Escherichia coli O6 GN=c... [more]
CLPB_ECO572.962e-2750.00Chaperone protein clpB OS=Escherichia coli O157:H7... [more]
CLPB_DICNO2.962e-2749.61Chaperone protein clpB OS=Dichelobacter nodosus GN... [more]
CLPB_AQUAE2.962e-2746.88Chaperone protein clpB OS=Aquifex aeolicus GN=clpB... [more]

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Properties
Property NameValue
Genbank descriptionC05075A04SK DroRLeaf1 Citrus clementina cDNA clone C05075A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295702 ID=CX295702; Name=CX295702; organism=Citrus clementina; type=EST; length=710bp
TAGAGGCTCGTGTTACTACCTTAATAAGTGAGATACAGAAATCAGGTGAT
GTCATTCTTTTCATTGATGAAGTTCACACACTTATTGGTTCGGGCACAGT
GGGACGAGGAAACAAGGGTACTGGTCTTGACATTTCCAATCTATTGAAGC
CATCACTTGGGAGGGGTGAACTTCAGTGTATTGCATCCACAACTCAAGAT
GAACACAGGACCCAATTTGAGAAGGACAAAGCATTAGCCCGGAGATTCCA
GCCTGTATTGATTAGTGAACCAAGCCAGGAGGATGCAGTTAGGATACTCT
TGGGTCTGCGTGAGAAATATGAGGCCCATCACAACTGCAAATTCACGCTA
GAAGCAATAAATGCTGCTGTGCACCTGTCAGCAAGGTCCAGGGAAGTAGG
CTGAAATATGATGATGTTGTTGCCAGCATGGGTGATACTAGTGAAATTGT
TGTAGAATCCTCTTTGCCTTCTGCTTCAGATGATGATGAACCTGCAGTCG
TGGGACCTGATGATATTGCAGCAGTTGCTTCACTTTGGTCTGGGATCCCA
GTTCAGCAGATCACTGCCGATGAAAGAATGCTGCTAGTGGGTCTCGAAGA
GCAGCTTANAAAGCGAGTTATTGGTCAAGATGAGGCTGTTGCCGCCATTT
CTCGAGCTGTTAAGAGATCCCGGGTTGGCCTGAAGGATCCTACAGGCCAC
AGCTGCATGC
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