CX295713
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA9_MOUSE (ATP-binding cassette sub-family A member 9 OS=Mus musculus GN=Abca9 PE=1 SV=1) HSP 1 Score: 100.908 bits (250), Expect = 7.494e-21 Identity = 52/99 (52.53%), Postives = 72/99 (72.73%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVK-PTEVSSVDLE 324 G+PP+V+LDEPSTGMDP ++ MW+ I T + A +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG LE++VK P++V ++ E Sbjct: 1436 GNPPVVLLDEPSTGMDPEGQQQMWQAIRATFTNTERGA-LLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKVKTPSQVEPLNTE 1533
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCAD_HUMAN (ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13 PE=2 SV=2) HSP 1 Score: 100.138 bits (248), Expect = 1.278e-20 Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV 291 G P I++LDEPS+GMDP +KR++W+ I + R+G A +LT+HSM E +ALCTR+ IMV G +C+GSPQH+K RFG+ ++V Sbjct: 4873 GKPDILLLDEPSSGMDPCSKRYLWQTIMK-EVREG-CAAVLTSHSMEECEALCTRLAIMVNGSFKCLGSPQHIKNRFGDGYTVKV 4955 HSP 2 Score: 75.8702 bits (185), Expect = 2.582e-13 Identity = 40/107 (37.38%), Postives = 68/107 (63.55%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV--KPTEVSSVDLEDL 330 S I G V+LDEP++G+DP ++ +W+++ L R+G+T +I TTH ++EA+AL R+ ++ G+LRC G P LK +G L L + +P+ + + DL+D+ Sbjct: 3985 SLGIAFMGMSRTVVLDEPTSGVDPCSRHSLWDIL--LKYREGRT-IIFTTHHLDEAEALSDRVAVLQHGRLRCCGPPFCLKEAYGQGLRLTLTRQPSVLEAHDLKDM 4088
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA7_HUMAN (ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3) HSP 1 Score: 99.3673 bits (246), Expect = 2.180e-20 Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF--GNFLELEV 291 GDP +V LDEP+TGMDP A+RF+W + + R+G++ V+LT+HSM E +ALC+R+ IMV G+ RC+GSPQHLK RF G+ L L V Sbjct: 1942 GDPAVVFLDEPTTGMDPSARRFLWNSLLAV-VREGRS-VMLTSHSMEECEALCSRLAIMVNGRFRCLGSPQHLKGRFAAGHTLTLRV 2026 HSP 2 Score: 72.0182 bits (175), Expect = 3.728e-12 Identity = 42/119 (35.29%), Postives = 67/119 (56.30%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN-------FLELEVKPTEVSSVDLEDLCQIIQER 351 S I G +VILDEP+ G+DP ++R +WE++ L R+G+T +IL+TH ++EA+ L R+ ++ GG+L C GSP L+ G+ L + E + D+E QE+ Sbjct: 949 SVAIAFVGGSQVVILDEPTAGVDPASRRGIWELL--LKYREGRT-LILSTHHLDEAELLGDRVAVVAGGRLCCCGSPLFLRRHLGSGYYLTLVKARLPLTTNEKADTDMEGSVDTRQEK 1064
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA1_HUMAN (ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=2) HSP 1 Score: 99.3673 bits (246), Expect = 2.180e-20 Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294 G PP+V LDEP+TGMDP A+RF+W LS + +V+LT+HSM E +ALCTR+ IMV G+ RC+GS QHLK RFG+ + V+ Sbjct: 2061 GGPPVVFLDEPTTGMDPKARRFLWNCA--LSVVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVR 2144 HSP 2 Score: 72.4034 bits (176), Expect = 2.854e-12 Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTEVS 309 G +VILDEP+ G+DP ++R +WE++ L RQG+T +IL+TH M+EA L RI I+ G+L C+GS LK + G +L L K E S Sbjct: 1049 GGSKVVILDEPTAGVDPYSRRGIWELL--LKYRQGRT-IILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESS 1138
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA9_HUMAN (ATP-binding cassette sub-family A member 9 OS=Homo sapiens GN=ABCA9 PE=1 SV=1) HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20 Identity = 48/94 (51.06%), Postives = 68/94 (72.34%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVD 318 G+P +V+LDEPSTGMDP ++ MW+VI R + R + +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG LE+K ++ ++ Sbjct: 1437 GNPSVVLLDEPSTGMDPEGQQQMWQVI-RATFRNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKLKNLAQME 1529
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA8_HUMAN (ATP-binding cassette sub-family A member 8 OS=Homo sapiens GN=ABCA8 PE=1 SV=3) HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20 Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVD 318 G+P +V+LDEPSTGMDP ++ MW+ I R + R + +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG LE+K ++ V+ Sbjct: 1394 GNPSVVLLDEPSTGMDPEGQQQMWQAI-RATFRNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKVKNLAQVE 1486
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA4_HUMAN (Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3) HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20 Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVK-PTEVSSVDLEDLCQIIQ 345 S I G PP+V+LDEP+TGMDP A+R +W VI + R+G+ AV+LT+HSM E +ALCTR+ IMV G RC+G+ QHLK++FG+ + +++K P + DL + Q Q Sbjct: 2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSI-IREGR-AVVLTSHSMEECEALCTRLAIMVKGAFRCMGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQ 2190 HSP 2 Score: 73.559 bits (179), Expect = 1.281e-12 Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 285 S I GD +VILDEP++G+DP ++R +W+++ L R G+T +I++TH M+EA L RI I+ G+L C G+P LK FG L L Sbjct: 1071 SVAIAFVGDAKVVILDEPTSGVDPYSRRSIWDLL--LKYRSGRT-IIMSTHHMDEADLLGDRIAIIAQGRLYCSGTPLFLKNCFGTGLYL 1157
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA2_HUMAN (ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3) HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20 Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSV 315 S I G P + LDEP+TGMDP A+RF+W +I L + G++ V+LT+HSM E +ALCTR+ IMV G+LRC+GS QHLK RFG+ + V+ SV Sbjct: 2195 STAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDL-IKTGRS-VVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQSV 2292 HSP 2 Score: 69.3218 bits (168), Expect = 2.416e-11 Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTE 303 S I G +ILDEP+ G+DP A+R +W++I L + G+T ++L+TH M+EA L RI I+ G+L+C GSP LK +G+ L L +P E Sbjct: 1132 SVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLI--LKYKPGRT-ILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYRLTLVKRPAE 1226
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA1_MOUSE (ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=3) HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20 Identity = 46/86 (53.49%), Postives = 64/86 (74.42%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294 G PP+V LDEP+TGMDP A+RF+W + ++G++ V+LT+HSM E +ALCTR+ IMV G+ RC+GS QHLK RFG+ + V+ Sbjct: 2061 GGPPVVFLDEPTTGMDPKARRFLWNCALSI-VKEGRS-VVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVR 2144 HSP 2 Score: 75.0998 bits (183), Expect = 4.404e-13 Identity = 63/202 (31.19%), Postives = 95/202 (47.03%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSE-QLVRDGGIQLPIFSEWWLAKE 639 G +VILDEP+ G+DP ++R +WE++ L RQG+T +IL+TH M+EA L RI I+ G+L C+GS LK + G L + +V S + S R S C+ DS+S ++ A LG++ TL S+ + + +SE +LV D G +L + AKE Sbjct: 1049 GGSKVVILDEPTAGVDPYSRRGIWELL--LKYRQGRT-IILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVES---------------SLSSCRNS--SSTVSCLKKEDSVSQSSSDAG---------------LGSDHESDTLTIDVSAISNLIRKHVSEARLVEDIGHELTYVLPYEAAKE 1215
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCAD_MOUSE (ATP-binding cassette sub-family A member 13 OS=Mus musculus GN=Abca13 PE=2 SV=1) HSP 1 Score: 98.5969 bits (244), Expect = 3.719e-20 Identity = 45/85 (52.94%), Postives = 63/85 (74.12%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV 291 G P I++LDEPS+GMDP +KR++W+ I++ R G A +LT+HSM E +ALCTR+ IMV G RC+G PQH+K RFG+ ++V Sbjct: 4848 GKPDILLLDEPSSGMDPCSKRYLWQTITQ-EVRDG-CAAVLTSHSMEECEALCTRLAIMVDGSFRCLGPPQHIKNRFGDGYTVKV 4930 HSP 2 Score: 71.2478 bits (173), Expect = 6.359e-12 Identity = 37/110 (33.64%), Postives = 67/110 (60.91%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV--KPTEVSSVDLEDLCQI 339 S I G V+LDEPS+G+DP ++R +W+++ L R+G+T +I TTH ++EA+ L + ++ G+LRC P LK +G L L + +P+ + + + +D+ ++ Sbjct: 3953 SIGIAFMGMSKTVVLDEPSSGVDPCSRRSLWDIL--LKYREGRT-IIFTTHHLDEAEMLSDHVAVLQQGRLRCYAPPADLKETYGQGLTLTLSKQPSILETQEPKDVARV 4059 The following BLAST results are available for this feature:
BLAST of CX295713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295713 ID=CX295713; Name=CX295713; organism=Citrus clementina; type=EST; length=737bpback to top |