CX295713

Overview
NameCX295713
Unique NameCX295713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA9_MOUSE (ATP-binding cassette sub-family A member 9 OS=Mus musculus GN=Abca9 PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.494e-21
Identity = 52/99 (52.53%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVK-PTEVSSVDLE 324
            G+PP+V+LDEPSTGMDP  ++ MW+ I    T   + A +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG    LE++VK P++V  ++ E
Sbjct: 1436 GNPPVVLLDEPSTGMDPEGQQQMWQAIRATFTNTERGA-LLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKVKTPSQVEPLNTE 1533          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCAD_HUMAN (ATP-binding cassette sub-family A member 13 OS=Homo sapiens GN=ABCA13 PE=2 SV=2)

HSP 1 Score: 100.138 bits (248), Expect = 1.278e-20
Identity = 45/85 (52.94%), Postives = 64/85 (75.29%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV 291
            G P I++LDEPS+GMDP +KR++W+ I +   R+G  A +LT+HSM E +ALCTR+ IMV G  +C+GSPQH+K RFG+   ++V
Sbjct: 4873 GKPDILLLDEPSSGMDPCSKRYLWQTIMK-EVREG-CAAVLTSHSMEECEALCTRLAIMVNGSFKCLGSPQHIKNRFGDGYTVKV 4955          

HSP 2 Score: 75.8702 bits (185), Expect = 2.582e-13
Identity = 40/107 (37.38%), Postives = 68/107 (63.55%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV--KPTEVSSVDLEDL 330
            S  I   G    V+LDEP++G+DP ++  +W+++  L  R+G+T +I TTH ++EA+AL  R+ ++  G+LRC G P  LK  +G  L L +  +P+ + + DL+D+
Sbjct: 3985 SLGIAFMGMSRTVVLDEPTSGVDPCSRHSLWDIL--LKYREGRT-IIFTTHHLDEAEALSDRVAVLQHGRLRCCGPPFCLKEAYGQGLRLTLTRQPSVLEAHDLKDM 4088          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA7_HUMAN (ATP-binding cassette sub-family A member 7 OS=Homo sapiens GN=ABCA7 PE=1 SV=3)

HSP 1 Score: 99.3673 bits (246), Expect = 2.180e-20
Identity = 49/87 (56.32%), Postives = 66/87 (75.86%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRF--GNFLELEV 291
            GDP +V LDEP+TGMDP A+RF+W  +  +  R+G++ V+LT+HSM E +ALC+R+ IMV G+ RC+GSPQHLK RF  G+ L L V
Sbjct: 1942 GDPAVVFLDEPTTGMDPSARRFLWNSLLAV-VREGRS-VMLTSHSMEECEALCSRLAIMVNGRFRCLGSPQHLKGRFAAGHTLTLRV 2026          

HSP 2 Score: 72.0182 bits (175), Expect = 3.728e-12
Identity = 42/119 (35.29%), Postives = 67/119 (56.30%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN-------FLELEVKPTEVSSVDLEDLCQIIQER 351
            S  I   G   +VILDEP+ G+DP ++R +WE++  L  R+G+T +IL+TH ++EA+ L  R+ ++ GG+L C GSP  L+   G+          L +   E +  D+E      QE+
Sbjct:  949 SVAIAFVGGSQVVILDEPTAGVDPASRRGIWELL--LKYREGRT-LILSTHHLDEAELLGDRVAVVAGGRLCCCGSPLFLRRHLGSGYYLTLVKARLPLTTNEKADTDMEGSVDTRQEK 1064          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA1_HUMAN (ATP-binding cassette sub-family A member 1 OS=Homo sapiens GN=ABCA1 PE=1 SV=2)

HSP 1 Score: 99.3673 bits (246), Expect = 2.180e-20
Identity = 47/86 (54.65%), Postives = 62/86 (72.09%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294
            G PP+V LDEP+TGMDP A+RF+W     LS  +   +V+LT+HSM E +ALCTR+ IMV G+ RC+GS QHLK RFG+   + V+
Sbjct: 2061 GGPPVVFLDEPTTGMDPKARRFLWNCA--LSVVKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVR 2144          

HSP 2 Score: 72.4034 bits (176), Expect = 2.854e-12
Identity = 42/93 (45.16%), Postives = 59/93 (63.44%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTEVS 309
            G   +VILDEP+ G+DP ++R +WE++  L  RQG+T +IL+TH M+EA  L  RI I+  G+L C+GS   LK + G   +L L  K  E S
Sbjct: 1049 GGSKVVILDEPTAGVDPYSRRGIWELL--LKYRQGRT-IILSTHHMDEADVLGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVESS 1138          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA9_HUMAN (ATP-binding cassette sub-family A member 9 OS=Homo sapiens GN=ABCA9 PE=1 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20
Identity = 48/94 (51.06%), Postives = 68/94 (72.34%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVD 318
            G+P +V+LDEPSTGMDP  ++ MW+VI R + R  +   +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG    LE+K   ++ ++
Sbjct: 1437 GNPSVVLLDEPSTGMDPEGQQQMWQVI-RATFRNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKLKNLAQME 1529          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA8_HUMAN (ATP-binding cassette sub-family A member 8 OS=Homo sapiens GN=ABCA8 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20
Identity = 48/94 (51.06%), Postives = 67/94 (71.28%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVD 318
            G+P +V+LDEPSTGMDP  ++ MW+ I R + R  +   +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG    LE+K   ++ V+
Sbjct: 1394 GNPSVVLLDEPSTGMDPEGQQQMWQAI-RATFRNTERGALLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKDYLLEMKVKNLAQVE 1486          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA4_HUMAN (Retinal-specific ATP-binding cassette transporter OS=Homo sapiens GN=ABCA4 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20
Identity = 54/113 (47.79%), Postives = 77/113 (68.14%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVK-PTEVSSVDLEDLCQIIQ 345
            S  I   G PP+V+LDEP+TGMDP A+R +W VI  +  R+G+ AV+LT+HSM E +ALCTR+ IMV G  RC+G+ QHLK++FG+   + +++K P +    DL  + Q  Q
Sbjct: 2080 STAIALIGCPPLVLLDEPTTGMDPQARRMLWNVIVSI-IREGR-AVVLTSHSMEECEALCTRLAIMVKGAFRCMGTIQHLKSKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQ 2190          

HSP 2 Score: 73.559 bits (179), Expect = 1.281e-12
Identity = 40/90 (44.44%), Postives = 58/90 (64.44%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLEL 285
            S  I   GD  +VILDEP++G+DP ++R +W+++  L  R G+T +I++TH M+EA  L  RI I+  G+L C G+P  LK  FG  L L
Sbjct: 1071 SVAIAFVGDAKVVILDEPTSGVDPYSRRSIWDLL--LKYRSGRT-IIMSTHHMDEADLLGDRIAIIAQGRLYCSGTPLFLKNCFGTGLYL 1157          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA2_HUMAN (ATP-binding cassette sub-family A member 2 OS=Homo sapiens GN=ABCA2 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20
Identity = 51/100 (51.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSV 315
            S  I   G P  + LDEP+TGMDP A+RF+W +I  L  + G++ V+LT+HSM E +ALCTR+ IMV G+LRC+GS QHLK RFG+   + V+     SV
Sbjct: 2195 STAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDL-IKTGRS-VVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQSV 2292          

HSP 2 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTE 303
            S  I   G    +ILDEP+ G+DP A+R +W++I  L  + G+T ++L+TH M+EA  L  RI I+  G+L+C GSP  LK  +G+   L L  +P E
Sbjct: 1132 SVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLI--LKYKPGRT-ILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGTYGDGYRLTLVKRPAE 1226          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA1_MOUSE (ATP-binding cassette sub-family A member 1 OS=Mus musculus GN=Abca1 PE=1 SV=3)

HSP 1 Score: 98.9821 bits (245), Expect = 2.848e-20
Identity = 46/86 (53.49%), Postives = 64/86 (74.42%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294
            G PP+V LDEP+TGMDP A+RF+W     +  ++G++ V+LT+HSM E +ALCTR+ IMV G+ RC+GS QHLK RFG+   + V+
Sbjct: 2061 GGPPVVFLDEPTTGMDPKARRFLWNCALSI-VKEGRS-VVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIVVR 2144          

HSP 2 Score: 75.0998 bits (183), Expect = 4.404e-13
Identity = 63/202 (31.19%), Postives = 95/202 (47.03%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQEMLLIVGRWLGNEERIKTLISSSSSPDRIFGEQLSE-QLVRDGGIQLPIFSEWWLAKE 639
            G   +VILDEP+ G+DP ++R +WE++  L  RQG+T +IL+TH M+EA  L  RI I+  G+L C+GS   LK + G    L +   +V S                + S R S       C+   DS+S  ++ A                LG++    TL    S+   +  + +SE +LV D G +L     +  AKE
Sbjct: 1049 GGSKVVILDEPTAGVDPYSRRGIWELL--LKYRQGRT-IILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKNQLGTGYYLTLVKKDVES---------------SLSSCRNS--SSTVSCLKKEDSVSQSSSDAG---------------LGSDHESDTLTIDVSAISNLIRKHVSEARLVEDIGHELTYVLPYEAAKE 1215          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCAD_MOUSE (ATP-binding cassette sub-family A member 13 OS=Mus musculus GN=Abca13 PE=2 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.719e-20
Identity = 45/85 (52.94%), Postives = 63/85 (74.12%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV 291
            G P I++LDEPS+GMDP +KR++W+ I++   R G  A +LT+HSM E +ALCTR+ IMV G  RC+G PQH+K RFG+   ++V
Sbjct: 4848 GKPDILLLDEPSSGMDPCSKRYLWQTITQ-EVRDG-CAAVLTSHSMEECEALCTRLAIMVDGSFRCLGPPQHIKNRFGDGYTVKV 4930          

HSP 2 Score: 71.2478 bits (173), Expect = 6.359e-12
Identity = 37/110 (33.64%), Postives = 67/110 (60.91%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV--KPTEVSSVDLEDLCQI 339
            S  I   G    V+LDEPS+G+DP ++R +W+++  L  R+G+T +I TTH ++EA+ L   + ++  G+LRC   P  LK  +G  L L +  +P+ + + + +D+ ++
Sbjct: 3953 SIGIAFMGMSKTVVLDEPSSGVDPCSRRSLWDIL--LKYREGRT-IIFTTHHLDEAEMLSDHVAVLQQGRLRCYAPPADLKETYGQGLTLTLSKQPSILETQEPKDVARV 4059          
The following BLAST results are available for this feature:
BLAST of CX295713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ABCA9_MOUSE7.494e-2152.53ATP-binding cassette sub-family A member 9 OS=Mus ... [more]
ABCAD_HUMAN1.278e-2052.94ATP-binding cassette sub-family A member 13 OS=Hom... [more]
ABCA7_HUMAN2.180e-2056.32ATP-binding cassette sub-family A member 7 OS=Homo... [more]
ABCA1_HUMAN2.180e-2054.65ATP-binding cassette sub-family A member 1 OS=Homo... [more]
ABCA9_HUMAN2.848e-2051.06ATP-binding cassette sub-family A member 9 OS=Homo... [more]
ABCA8_HUMAN2.848e-2051.06ATP-binding cassette sub-family A member 8 OS=Homo... [more]
ABCA4_HUMAN2.848e-2047.79Retinal-specific ATP-binding cassette transporter ... [more]
ABCA2_HUMAN2.848e-2051.00ATP-binding cassette sub-family A member 2 OS=Homo... [more]
ABCA1_MOUSE2.848e-2053.49ATP-binding cassette sub-family A member 1 OS=Mus ... [more]
ABCAD_MOUSE3.719e-2052.94ATP-binding cassette sub-family A member 13 OS=Mus... [more]

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Properties
Property NameValue
Genbank descriptionC05075B03SK DroRLeaf1 Citrus clementina cDNA clone C05075B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295713 ID=CX295713; Name=CX295713; organism=Citrus clementina; type=EST; length=737bp
GATTCGGCCGAGGCCTCGTGCCGAATCGGCACGAGGGGAGATCCTCCAAT
TGTTATTCTTGATGAGCCATCAACAGGCATGGATCCAATTGCTAAACGAT
TCATGTGGGAAGTGATATCTCGTTTATCAACTAGACAAGGGAAGACAGCA
GTTATCCTTACAACCCACAGCATGAATGAAGCTCAAGCATTATGCACCAG
AATTGGAATAATGGTTGGCGGCCAGCTTAGATGTATTGGAAGTCCCCAGC
ATTTAAAAACACGGTTTGGGAATTTTCTTGAGCTAGAGGTTAAACCTACT
GAGGTTAGCTCGGTAGATTTGGAAGACCTTTGCCAGATTATTCAAGAAAG
AGTATTTGACATTCCTTCTCAGCGAAGGAGCTTGTTAGATGACCTTGAAG
TTTGCATTGGTGGTATTGACTCCATTTCATCAGAAAATGCAACGGCGGCA
GAAATTAGCTTGTCACAGGAAATGTTACTTATAGTTGGGCGCTGGCTTGG
CAATGAAGAAAGAATAAAAACACTTATAAGTTCCTCCTCTTCTCCTGATA
GAATATTTGGGGAACAATTGTCTGAGCAGTTGGTTCGAGATGGGGGTATA
CAATTGCCGATATTCTCCGAGTGGTGGTTGGCCAAAGAAAAGTTTGCGGT
GATTGATTCTTTCATTTTATCTTCATTTCCTGGCTCAACATTTCAGGGGT
GCAACGGGTTGAGTGTCAATATCAGCTACATTCTCGG
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