CX295713

Overview
NameCX295713
Unique NameCX295713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA6_HUMAN (ATP-binding cassette sub-family A member 6 OS=Homo sapiens GN=ABCA6 PE=1 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDL 321
            G+ P+++LDEPSTG+DP  ++ MW+ I  +  +  +  V+LTTH++ EA+ALC R+ IMV G+LRCIGS QHLK + G    LE+K  E S V L
Sbjct: 1429 GNSPVLLLDEPSTGIDPTGQQQMWQAIQAV-VKNTERGVLLTTHNLAEAEALCDRVAIMVSGRLRCIGSIQHLKNKLGKDYILELKVKETSQVTL 1522          

HSP 2 Score: 75.485 bits (184), Expect = 3.372e-13
Identity = 49/155 (31.61%), Postives = 80/155 (51.61%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV------KPTEVSSV------DLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLS 465
            GDP I++LDEP+TG+DP ++  +W   S L  R+    ++ +T SM+EA  L  R  IM  G+L+C GS   LK R+G    L +       P +++S       D +   +  ++ V+ +P +R +   DL      +D  S +  T  +IS+S
Sbjct:  631 GDPQILLLDEPTTGLDPFSRDQVW---SLLRERRADHVILFSTQSMDEADILADRKVIMSNGRLKCAGSSMFLKRRWGLGYHLSLHRNEICNPEQITSFITHHIPDAKLKTENKEKLVYTLPLERTNTFPDL---FSDLDKCSDQGVTGYDISMS 779          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA2_MOUSE (ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4)

HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20
Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSV 315
            S  I   G P  + LDEP+TGMDP A+RF+W +I  L  + G++ V+LT+HSM E +ALCTR+ IMV G+LRC+GS QHLK RFG+   + V+     +V
Sbjct: 2196 STAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDL-IKTGRS-VVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQNV 2293          

HSP 2 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 273
            S  I   G    +ILDEP+ G+DP A+R +W++I  L  + G+T ++L+TH M+EA  L  RI I+  G+L+C GSP  LK  +G+
Sbjct: 1132 SVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLI--LKYKPGRT-ILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGD 1214          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB5A_ARATH (ABC transporter A family member 5 OS=Arabidopsis thaliana GN=ABCA5 PE=3 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 8.286e-20
Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQ---ERVFDIPSQRRSLLDDLEVCIGGI 417
            S  I   G P +V +DEPSTG+DP ++R +W  I R       TA+ILTTHSM EA+ LC R+GI V G+L+C+G+P+ LK R+G    L +        D+E L Q +    ++++ I   ++  +   EV I  +
Sbjct:  762 SVAISLIGSPKVVYMDEPSTGLDPASRRSLWTAIKRAKNH---TAIILTTHSMEEAEFLCDRLGIFVDGRLQCVGNPKELKARYGGSYVLTMTTPSEHEKDVEMLVQDVSPNAKKIYHIAGTQKFEIPKEEVRISEV 895          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA4_MOUSE (Retinal-specific ATP-binding cassette transporter OS=Mus musculus GN=Abca4 PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19
Identity = 64/168 (38.10%), Postives = 95/168 (56.55%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVK-PTEVSSVDLEDLCQIIQ---------ER-----VFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQ 468
            S  I   G PP+++LDEP+TGMDP A+R +W  I  +  R+G+ AV+LT+HSM E +ALCTR+ IMV G  +C+G+ QHLK +FG+   + +++K P +    DL  + Q  Q         ER      F +PS   SL    ++ I   DS+  E  +  + +L Q
Sbjct: 2079 STAIALTGCPPLLLLDEPTTGMDPQARRMLWNTIVSI-IREGR-AVVLTSHSMEECEALCTRLAIMVKGTFQCLGTIQHLKYKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHHSMLQFQVPSS--SLARIFQLLISHKDSLLIEEYSVTQTTLDQ 2242          

HSP 2 Score: 71.633 bits (174), Expect = 4.869e-12
Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTEVSS 312
            S  I   GD  +V+LDEP++G+DP ++R +W+++  L  R G+T +I++TH M+EA  L  RI I+  G+L C G+P  LK  FG   +L L  K   + S
Sbjct: 1071 SVAIAFVGDSKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSGRT-IIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQS 1168          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA2_RAT (ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19
Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSV 315
            S  I   G P  + LDEP+TGMDP A+RF+W +I  L  + G++ V+LT+HSM E +A+CTR+ IMV G+LRC+GS QHLK RFG+   + V+     +V
Sbjct: 2196 STAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDL-IKTGRS-VVLTSHSMEECEAVCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQNV 2293          

HSP 2 Score: 69.3218 bits (168), Expect = 2.416e-11
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTE 303
            S  I   G    +ILDEP+ G+DP A+R +W++I  L  + G+T ++L+TH M+EA  L  RI I+  G+L+C GSP  LK  +G+   L L  +P E
Sbjct: 1132 SVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLI--LKYKPGRT-ILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKRPAE 1226          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABC8A_MOUSE (ATP-binding cassette sub-family A member 8-A OS=Mus musculus GN=Abca8a PE=2 SV=1)

HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19
Identity = 50/99 (50.51%), Postives = 71/99 (71.72%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVK-PTEVSSVDLE 324
            G+P +V+LDEPSTGMDP  ++ MW+ I    +   + A +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG    LE++VK P++V  ++ E
Sbjct: 1433 GNPSVVLLDEPSTGMDPEGQQQMWQAIQATFSNTERGA-LLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKEYLLEMKVKTPSQVEPLNTE 1530          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB3A_ARATH (ABC transporter A family member 3 OS=Arabidopsis thaliana GN=ABCA3 PE=2 SV=2)

HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19
Identity = 49/113 (43.36%), Postives = 69/113 (61.06%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERV 354
            S  I   G+P +V +DEPSTG+DP +++ +W VI         TA+ILTTHSM EA+ LC R+GI V G+L+CIG+P+ LK R+G    L +  +     D+E L Q +   V
Sbjct:  404 SVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH---TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYVLTMTTSSEHEKDVEMLVQEVSPNV 513          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCAA_HUMAN (ATP-binding cassette sub-family A member 10 OS=Homo sapiens GN=ABCA10 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 2.411e-19
Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK---PTEVSSVDLEDL 330
            G+P +V+LDEP TGMDP  ++ MW+++ + + +  +   +LTTH M+EA+A+C R+ +MV G LRCIGS QHLK +FG    LE+K   PT+V ++  E L
Sbjct: 1356 GNPSVVLLDEPFTGMDPEGQQQMWQIL-QATVKNKERGTLLTTHYMSEAEAVCDRMAMMVSGTLRCIGSIQHLKNKFGRDYLLEIKMKEPTQVEALHTEIL 1455          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB4A_ARATH (ABC transporter A family member 4 OS=Arabidopsis thaliana GN=ABCA4 PE=3 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 7.014e-19
Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQ 336
            S  I   G P +V +DEPSTG+DP ++R +W  I         TA+ILTTHSM EA+ LC R+GI V G+L+C+G+P+ LK R+G    L +  +     D+E L Q
Sbjct:  763 SVAISLIGSPKVVYMDEPSTGLDPASRRSLWTAIKGAKKH---TAIILTTHSMEEAEFLCDRLGIFVDGRLQCVGNPKELKARYGGSYVLTMTTSSEHEKDVEMLIQ 866          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB6A_ARATH (ABC transporter A family member 6 OS=Arabidopsis thaliana GN=ABCA6 PE=3 SV=2)

HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQ 336
            S  I   G P +V +DEPSTG+DP ++  +W VI R        A+ILTTHSM EA+ LC R+GI V G+L+CIG+P+ LK R+G    L +  +     D+E L Q
Sbjct:  758 SVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKH---AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYVLTITTSPEHEKDVETLVQ 861          
The following BLAST results are available for this feature:
BLAST of CX295713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
ABCA6_HUMAN6.344e-2049.47ATP-binding cassette sub-family A member 6 OS=Homo... [more]
ABCA2_MOUSE6.344e-2050.00ATP-binding cassette sub-family A member 2 OS=Mus ... [more]
AB5A_ARATH8.286e-2037.96ABC transporter A family member 5 OS=Arabidopsis t... [more]
ABCA4_MOUSE1.413e-1938.10Retinal-specific ATP-binding cassette transporter ... [more]
ABCA2_RAT1.413e-1949.00ATP-binding cassette sub-family A member 2 OS=Ratt... [more]
ABC8A_MOUSE1.413e-1950.51ATP-binding cassette sub-family A member 8-A OS=Mu... [more]
AB3A_ARATH1.846e-1943.36ABC transporter A family member 3 OS=Arabidopsis t... [more]
ABCAA_HUMAN2.411e-1946.53ATP-binding cassette sub-family A member 10 OS=Hom... [more]
AB4A_ARATH7.014e-1943.93ABC transporter A family member 4 OS=Arabidopsis t... [more]
AB6A_ARATH9.161e-1944.86ABC transporter A family member 6 OS=Arabidopsis t... [more]

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Properties
Property NameValue
Genbank descriptionC05075B03SK DroRLeaf1 Citrus clementina cDNA clone C05075B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295713 ID=CX295713; Name=CX295713; organism=Citrus clementina; type=EST; length=737bp
GATTCGGCCGAGGCCTCGTGCCGAATCGGCACGAGGGGAGATCCTCCAAT
TGTTATTCTTGATGAGCCATCAACAGGCATGGATCCAATTGCTAAACGAT
TCATGTGGGAAGTGATATCTCGTTTATCAACTAGACAAGGGAAGACAGCA
GTTATCCTTACAACCCACAGCATGAATGAAGCTCAAGCATTATGCACCAG
AATTGGAATAATGGTTGGCGGCCAGCTTAGATGTATTGGAAGTCCCCAGC
ATTTAAAAACACGGTTTGGGAATTTTCTTGAGCTAGAGGTTAAACCTACT
GAGGTTAGCTCGGTAGATTTGGAAGACCTTTGCCAGATTATTCAAGAAAG
AGTATTTGACATTCCTTCTCAGCGAAGGAGCTTGTTAGATGACCTTGAAG
TTTGCATTGGTGGTATTGACTCCATTTCATCAGAAAATGCAACGGCGGCA
GAAATTAGCTTGTCACAGGAAATGTTACTTATAGTTGGGCGCTGGCTTGG
CAATGAAGAAAGAATAAAAACACTTATAAGTTCCTCCTCTTCTCCTGATA
GAATATTTGGGGAACAATTGTCTGAGCAGTTGGTTCGAGATGGGGGTATA
CAATTGCCGATATTCTCCGAGTGGTGGTTGGCCAAAGAAAAGTTTGCGGT
GATTGATTCTTTCATTTTATCTTCATTTCCTGGCTCAACATTTCAGGGGT
GCAACGGGTTGAGTGTCAATATCAGCTACATTCTCGG
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