CX295713
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA6_HUMAN (ATP-binding cassette sub-family A member 6 OS=Homo sapiens GN=ABCA6 PE=1 SV=2) HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20 Identity = 47/95 (49.47%), Postives = 66/95 (69.47%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDL 321 G+ P+++LDEPSTG+DP ++ MW+ I + + + V+LTTH++ EA+ALC R+ IMV G+LRCIGS QHLK + G LE+K E S V L Sbjct: 1429 GNSPVLLLDEPSTGIDPTGQQQMWQAIQAV-VKNTERGVLLTTHNLAEAEALCDRVAIMVSGRLRCIGSIQHLKNKLGKDYILELKVKETSQVTL 1522 HSP 2 Score: 75.485 bits (184), Expect = 3.372e-13 Identity = 49/155 (31.61%), Postives = 80/155 (51.61%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEV------KPTEVSSV------DLEDLCQIIQERVFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLS 465 GDP I++LDEP+TG+DP ++ +W S L R+ ++ +T SM+EA L R IM G+L+C GS LK R+G L + P +++S D + + ++ V+ +P +R + DL +D S + T +IS+S Sbjct: 631 GDPQILLLDEPTTGLDPFSRDQVW---SLLRERRADHVILFSTQSMDEADILADRKVIMSNGRLKCAGSSMFLKRRWGLGYHLSLHRNEICNPEQITSFITHHIPDAKLKTENKEKLVYTLPLERTNTFPDL---FSDLDKCSDQGVTGYDISMS 779
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA2_MOUSE (ATP-binding cassette sub-family A member 2 OS=Mus musculus GN=Abca2 PE=1 SV=4) HSP 1 Score: 97.8265 bits (242), Expect = 6.344e-20 Identity = 50/100 (50.00%), Postives = 68/100 (68.00%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSV 315 S I G P + LDEP+TGMDP A+RF+W +I L + G++ V+LT+HSM E +ALCTR+ IMV G+LRC+GS QHLK RFG+ + V+ +V Sbjct: 2196 STAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDL-IKTGRS-VVLTSHSMEECEALCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQNV 2293 HSP 2 Score: 68.9366 bits (167), Expect = 3.156e-11 Identity = 37/86 (43.02%), Postives = 55/86 (63.95%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN 273 S I G +ILDEP+ G+DP A+R +W++I L + G+T ++L+TH M+EA L RI I+ G+L+C GSP LK +G+ Sbjct: 1132 SVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLI--LKYKPGRT-ILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGD 1214
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB5A_ARATH (ABC transporter A family member 5 OS=Arabidopsis thaliana GN=ABCA5 PE=3 SV=2) HSP 1 Score: 97.4413 bits (241), Expect = 8.286e-20 Identity = 52/137 (37.96%), Postives = 78/137 (56.93%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQ---ERVFDIPSQRRSLLDDLEVCIGGI 417 S I G P +V +DEPSTG+DP ++R +W I R TA+ILTTHSM EA+ LC R+GI V G+L+C+G+P+ LK R+G L + D+E L Q + ++++ I ++ + EV I + Sbjct: 762 SVAISLIGSPKVVYMDEPSTGLDPASRRSLWTAIKRAKNH---TAIILTTHSMEEAEFLCDRLGIFVDGRLQCVGNPKELKARYGGSYVLTMTTPSEHEKDVEMLVQDVSPNAKKIYHIAGTQKFEIPKEEVRISEV 895
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA4_MOUSE (Retinal-specific ATP-binding cassette transporter OS=Mus musculus GN=Abca4 PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19 Identity = 64/168 (38.10%), Postives = 95/168 (56.55%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVK-PTEVSSVDLEDLCQIIQ---------ER-----VFDIPSQRRSLLDDLEVCIGGIDSISSENATAAEISLSQ 468 S I G PP+++LDEP+TGMDP A+R +W I + R+G+ AV+LT+HSM E +ALCTR+ IMV G +C+G+ QHLK +FG+ + +++K P + DL + Q Q ER F +PS SL ++ I DS+ E + + +L Q Sbjct: 2079 STAIALTGCPPLLLLDEPTTGMDPQARRMLWNTIVSI-IREGR-AVVLTSHSMEECEALCTRLAIMVKGTFQCLGTIQHLKYKFGDGYIVTMKIKSPKDDLLPDLNPVEQFFQGNFPGSVQRERHHSMLQFQVPSS--SLARIFQLLISHKDSLLIEEYSVTQTTLDQ 2242 HSP 2 Score: 71.633 bits (174), Expect = 4.869e-12 Identity = 41/101 (40.59%), Postives = 62/101 (61.39%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTEVSS 312 S I GD +V+LDEP++G+DP ++R +W+++ L R G+T +I++TH M+EA L RI I+ G+L C G+P LK FG +L L K + S Sbjct: 1071 SVAIAFVGDSKVVVLDEPTSGVDPYSRRSIWDLL--LKYRSGRT-IIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNCFGTGFYLTLVRKMKNIQS 1168
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA2_RAT (ATP-binding cassette sub-family A member 2 OS=Rattus norvegicus GN=Abca2 PE=1 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19 Identity = 49/100 (49.00%), Postives = 68/100 (68.00%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSV 315 S I G P + LDEP+TGMDP A+RF+W +I L + G++ V+LT+HSM E +A+CTR+ IMV G+LRC+GS QHLK RFG+ + V+ +V Sbjct: 2196 STAIALIGYPAFIFLDEPTTGMDPKARRFLWNLILDL-IKTGRS-VVLTSHSMEECEAVCTRLAIMVNGRLRCLGSIQHLKNRFGDGYMITVRTKSSQNV 2293 HSP 2 Score: 69.3218 bits (168), Expect = 2.416e-11 Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTE 303 S I G +ILDEP+ G+DP A+R +W++I L + G+T ++L+TH M+EA L RI I+ G+L+C GSP LK +G+ L L +P E Sbjct: 1132 SVAIAFVGGSRAIILDEPTAGVDPYARRAIWDLI--LKYKPGRT-ILLSTHHMDEADLLGDRIAIISHGKLKCCGSPLFLKGAYGDGYRLTLVKRPAE 1226
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABC8A_MOUSE (ATP-binding cassette sub-family A member 8-A OS=Mus musculus GN=Abca8a PE=2 SV=1) HSP 1 Score: 96.6709 bits (239), Expect = 1.413e-19 Identity = 50/99 (50.51%), Postives = 71/99 (71.72%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVK-PTEVSSVDLE 324 G+P +V+LDEPSTGMDP ++ MW+ I + + A +LTTH M EA+A+C R+ IMV G+LRCIGS QHLK++FG LE++VK P++V ++ E Sbjct: 1433 GNPSVVLLDEPSTGMDPEGQQQMWQAIQATFSNTERGA-LLTTHYMAEAEAVCDRVAIMVSGRLRCIGSIQHLKSKFGKEYLLEMKVKTPSQVEPLNTE 1530
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB3A_ARATH (ABC transporter A family member 3 OS=Arabidopsis thaliana GN=ABCA3 PE=2 SV=2) HSP 1 Score: 96.2857 bits (238), Expect = 1.846e-19 Identity = 49/113 (43.36%), Postives = 69/113 (61.06%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQERV 354 S I G+P +V +DEPSTG+DP +++ +W VI TA+ILTTHSM EA+ LC R+GI V G+L+CIG+P+ LK R+G L + + D+E L Q + V Sbjct: 404 SVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKNAKRH---TAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYVLTMTTSSEHEKDVEMLVQEVSPNV 513
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCAA_HUMAN (ATP-binding cassette sub-family A member 10 OS=Homo sapiens GN=ABCA10 PE=1 SV=2) HSP 1 Score: 95.9005 bits (237), Expect = 2.411e-19 Identity = 47/101 (46.53%), Postives = 70/101 (69.31%), Query Frame = 1 Query: 37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK---PTEVSSVDLEDL 330 G+P +V+LDEP TGMDP ++ MW+++ + + + + +LTTH M+EA+A+C R+ +MV G LRCIGS QHLK +FG LE+K PT+V ++ E L Sbjct: 1356 GNPSVVLLDEPFTGMDPEGQQQMWQIL-QATVKNKERGTLLTTHYMSEAEAVCDRMAMMVSGTLRCIGSIQHLKNKFGRDYLLEIKMKEPTQVEALHTEIL 1455
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB4A_ARATH (ABC transporter A family member 4 OS=Arabidopsis thaliana GN=ABCA4 PE=3 SV=2) HSP 1 Score: 94.3597 bits (233), Expect = 7.014e-19 Identity = 47/107 (43.93%), Postives = 65/107 (60.75%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQ 336 S I G P +V +DEPSTG+DP ++R +W I TA+ILTTHSM EA+ LC R+GI V G+L+C+G+P+ LK R+G L + + D+E L Q Sbjct: 763 SVAISLIGSPKVVYMDEPSTGLDPASRRSLWTAIKGAKKH---TAIILTTHSMEEAEFLCDRLGIFVDGRLQCVGNPKELKARYGGSYVLTMTTSSEHEKDVEMLIQ 866
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB6A_ARATH (ABC transporter A family member 6 OS=Arabidopsis thaliana GN=ABCA6 PE=3 SV=2) HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19 Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 1 Query: 16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQ 336 S I G P +V +DEPSTG+DP ++ +W VI R A+ILTTHSM EA+ LC R+GI V G+L+CIG+P+ LK R+G L + + D+E L Q Sbjct: 758 SVAISLIGSPKVVYMDEPSTGLDPASRINLWTVIKRAKKH---AAIILTTHSMEEAEFLCDRLGIFVDGRLQCIGNPKELKGRYGGSYVLTITTSPEHEKDVETLVQ 861 The following BLAST results are available for this feature:
BLAST of CX295713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 48
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Sequences
The
following sequences are available for this feature:
EST sequence >CX295713 ID=CX295713; Name=CX295713; organism=Citrus clementina; type=EST; length=737bpback to top |