CX295713

Overview
NameCX295713
Unique NameCX295713
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length737
Libraries
Library NameType
DroRLeaf1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB2A_ARATH (ABC transporter A family member 2 OS=Arabidopsis thaliana GN=ABCA2 PE=2 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 9.161e-19
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270
            S  +   GDP +V LDEP+TGMDPI +R +W++I    T++G+ A+ILTTHSM EA  L  RIGIM  G+LRCIG+   LK+RFG
Sbjct:  674 SVAVSLIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--TKKGR-AIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFG 755          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB7A_ARATH (ABC transporter A family member 7 OS=Arabidopsis thaliana GN=ABCA7 PE=1 SV=2)

HSP 1 Score: 93.2041 bits (230), Expect = 1.563e-18
Identity = 51/137 (37.23%), Postives = 79/137 (57.66%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQ---ERVFDIPSQRRSLLDDLEVCIGGI 417
            S  I   G+P +V +DEPSTG+DP +++ +W VI R       TA+ILTTHSM EA+ LC R+GI V G L+CIG+P+ LK R+G      +  +     ++E L + +    ++++ I   ++  L   EV I  +
Sbjct:  761 SVAISLIGNPKVVYMDEPSTGLDPASRKNLWTVIKRAKQN---TAIILTTHSMEEAEFLCDRLGIFVDGGLQCIGNPKELKGRYGGSYVFTMTTSSEHEQNVEKLIKDVSPNAKKIYHIAGTQKFELPKEEVRISEV 894          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB9A_ARATH (ABC transporter A family member 9 OS=Arabidopsis thaliana GN=ABCA9 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 47/85 (55.29%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270
            S  I   GDP +V LDEP+TGMDPI +R +W++I    +++G+ A+ILTTHSM EA  L  RIGIM  G+LRCIG+   LK+RFG
Sbjct:  676 SVAIALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGR-AIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFG 757          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB12A_ARATH (ABC transporter A family member 12 OS=Arabidopsis thaliana GN=ABCA12 PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 2.041e-18
Identity = 50/137 (36.50%), Postives = 79/137 (57.66%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQIIQ---ERVFDIPSQRRSLLDDLEVCIGGI 417
            S  I   G+P +V LDEPSTG+DP +++ +W VI R       TA+ILTTHSM EA+ LC R+GI V G L+CIG+ + LK+R+G      +  +     ++E L + +    ++++ +   ++  L   EV I  +
Sbjct:  743 SVAISLIGNPKVVYLDEPSTGLDPASRKNLWNVIKRAKQN---TAIILTTHSMEEAEFLCDRLGIFVDGGLQCIGNSKELKSRYGGSYVFTMTTSSKHEEEVERLVESVSPNAKKIYHLAGTQKFELPKQEVRIAEV 876          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB11A_ARATH (ABC transporter A family member 11 OS=Arabidopsis thaliana GN=ABCA11 PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.665e-18
Identity = 46/85 (54.12%), Postives = 61/85 (71.76%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270
            S  +   GDP +V LDEP+TGMDPI +R +W++I    +++G+ A+ILTTHSM EA  L  RIGIM  G+LRCIG+   LK+RFG
Sbjct:  675 SVAVALIGDPKLVFLDEPTTGMDPITRRHVWDIIQE--SKKGR-AIILTTHSMEEADILSDRIGIMAKGRLRCIGTSIRLKSRFG 756          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABC8B_MOUSE (ATP-binding cassette sub-family A member 8-B OS=Mus musculus GN=Abca8b PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.481e-18
Identity = 46/91 (50.55%), Postives = 65/91 (71.43%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGN--FLELEVKPTE 303
            G+P I++LDEPSTG+DP  ++ +W+ I  +     + A +LTTH M EA+ALC R+ I+V G+LRCIGS QHLK++FG    LE++VK  E
Sbjct: 1432 GNPSILLLDEPSTGLDPEGQQQIWQAIRAIIKNTDRGA-LLTTHYMAEAEALCDRVAILVSGRLRCIGSIQHLKSKFGKDYLLEMKVKTLE 1521          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: AB10A_ARATH (ABC transporter A family member 10 OS=Arabidopsis thaliana GN=ABCA10 PE=2 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.481e-18
Identity = 50/137 (36.50%), Postives = 78/137 (56.93%), Query Frame = 1
Query:   16 SCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDLEDLCQII---QERVFDIPSQRRSLLDDLEVCIGGI 417
            S  I   G+P +V +DEPSTG+DP +++ +W VI R       TA+ILTTHSM EA+ LC R+GI V G L+C+G+P+ LK R+G      +  +      +E + + I    +RV+ +   ++  +   EV I  +
Sbjct:  735 SVAISLIGNPKVVYMDEPSTGLDPASRKDLWTVIQRAKQN---TAIILTTHSMEEAEFLCDRLGIFVDGGLQCVGNPKELKGRYGGSYVFTMTTSVEHEEKVERMVKHISPNSKRVYHLAGTQKFEIPKQEVMIADV 868          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA6_MOUSE (ATP-binding cassette sub-family A member 6 OS=Mus musculus GN=Abca6 PE=2 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.256e-17
Identity = 44/95 (46.32%), Postives = 62/95 (65.26%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKPTEVSSVDL 321
            G+ P++ILDEPSTG+D   K  +W+ I  +  +  +  V+L+TH + EA+ALC R  IMV G+LRCIG  QHLK +FG    LE++  +VS   L
Sbjct: 1436 GNSPVLILDEPSTGLDVSGKHQVWQAIQAV-VKDNEKGVLLSTHDLAEAEALCDRAAIMVSGRLRCIGPIQHLKRKFGQDYVLELRVKDVSQEPL 1529          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCAB_DICDI (ABC transporter A family member 11 OS=Dictyostelium discoideum GN=abcA11 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 38/87 (43.68%), Postives = 60/87 (68.97%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVKP 297
            GDP +V+LDEPST +DPI++  +  +I  L   +   ++I+TTHS+NE    C R+ IMV G++RCIG+P HLK ++G+   +++ P
Sbjct:  611 GDPQVVLLDEPSTSLDPISRNELHSLIDELKVNK---SIIMTTHSINEINQCCNRVAIMVDGKIRCIGTPNHLKHKYGSGYTIDIIP 694          
BLAST of CX295713 vs. ExPASy Swiss-Prot
Match: ABCA2_DICDI (ABC transporter A family member 2 OS=Dictyostelium discoideum GN=abcA2 PE=3 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 5.027e-17
Identity = 42/95 (44.21%), Postives = 64/95 (67.37%), Query Frame = 1
Query:   10 EASCRIGTRGDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFGNFLELEVK 294
            + S  I   G+P IV LDEPSTG D + ++++W V+S L+  +    +ILT+HSM E +ALC R+ IM  G+++C+GS QH+K++FG     +VK
Sbjct: 1437 KTSLSIAMLGNPSIVSLDEPSTGCDAVVRKYIWNVVSELAKDK---VIILTSHSMAEVEALCYRMTIMRDGKMKCLGSIQHIKSKFGAGYTFDVK 1528          

HSP 2 Score: 68.9366 bits (167), Expect = 3.156e-11
Identity = 35/78 (44.87%), Postives = 53/78 (67.95%), Query Frame = 1
Query:   37 GDPPIVILDEPSTGMDPIAKRFMWEVISRLSTRQGKTAVILTTHSMNEAQALCTRIGIMVGGQLRCIGSPQHLKTRFG 270
            G   ++ LDE S+GMDP+++R +W+ +  L  ++G+T +ILTTH + EA  L  RI I+  G+LRC GS  +LK +FG
Sbjct:  635 GRSDVIFLDEVSSGMDPLSRRVVWDFL--LKYKKGRT-IILTTHYLEEADYLGDRIAIISHGKLRCDGSSLYLKNKFG 709          
The following BLAST results are available for this feature:
BLAST of CX295713 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 48
Match NameE-valueIdentityDescription
AB2A_ARATH9.161e-1955.29ABC transporter A family member 2 OS=Arabidopsis t... [more]
AB7A_ARATH1.563e-1837.23ABC transporter A family member 7 OS=Arabidopsis t... [more]
AB9A_ARATH2.041e-1855.29ABC transporter A family member 9 OS=Arabidopsis t... [more]
AB12A_ARATH2.041e-1836.50ABC transporter A family member 12 OS=Arabidopsis ... [more]
AB11A_ARATH2.665e-1854.12ABC transporter A family member 11 OS=Arabidopsis ... [more]
ABC8B_MOUSE3.481e-1850.55ATP-binding cassette sub-family A member 8-B OS=Mu... [more]
AB10A_ARATH3.481e-1836.50ABC transporter A family member 10 OS=Arabidopsis ... [more]
ABCA6_MOUSE2.256e-1746.32ATP-binding cassette sub-family A member 6 OS=Mus ... [more]
ABCAB_DICDI5.027e-1743.68ABC transporter A family member 11 OS=Dictyosteliu... [more]
ABCA2_DICDI5.027e-1744.21ABC transporter A family member 2 OS=Dictyostelium... [more]

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Properties
Property NameValue
Genbank descriptionC05075B03SK DroRLeaf1 Citrus clementina cDNA clone C05075B03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX295713 ID=CX295713; Name=CX295713; organism=Citrus clementina; type=EST; length=737bp
GATTCGGCCGAGGCCTCGTGCCGAATCGGCACGAGGGGAGATCCTCCAAT
TGTTATTCTTGATGAGCCATCAACAGGCATGGATCCAATTGCTAAACGAT
TCATGTGGGAAGTGATATCTCGTTTATCAACTAGACAAGGGAAGACAGCA
GTTATCCTTACAACCCACAGCATGAATGAAGCTCAAGCATTATGCACCAG
AATTGGAATAATGGTTGGCGGCCAGCTTAGATGTATTGGAAGTCCCCAGC
ATTTAAAAACACGGTTTGGGAATTTTCTTGAGCTAGAGGTTAAACCTACT
GAGGTTAGCTCGGTAGATTTGGAAGACCTTTGCCAGATTATTCAAGAAAG
AGTATTTGACATTCCTTCTCAGCGAAGGAGCTTGTTAGATGACCTTGAAG
TTTGCATTGGTGGTATTGACTCCATTTCATCAGAAAATGCAACGGCGGCA
GAAATTAGCTTGTCACAGGAAATGTTACTTATAGTTGGGCGCTGGCTTGG
CAATGAAGAAAGAATAAAAACACTTATAAGTTCCTCCTCTTCTCCTGATA
GAATATTTGGGGAACAATTGTCTGAGCAGTTGGTTCGAGATGGGGGTATA
CAATTGCCGATATTCTCCGAGTGGTGGTTGGCCAAAGAAAAGTTTGCGGT
GATTGATTCTTTCATTTTATCTTCATTTCCTGGCTCAACATTTCAGGGGT
GCAACGGGTTGAGTGTCAATATCAGCTACATTCTCGG
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